SRGD Gene ID 980 BLASTp at NCBI n/a n/a  
OrganismsAt ,Zm ,Lj ,Gm ,Pt ,Vv ,Mt
Gene count9
Cintron count3
Cintron classesU2 ,em
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
---------------MGSN-----TGGASGGFYQPFNSSNLAGAGASTGIQN-------F
---------------MGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAP-PPPPPF
---------------MGPKRQRITDQGSS--FYGGSPGSNFMYNASPYSYIGQ---PPPF
-----RYPDGPDGREMGAKRQRMVDQGPS--FYGNSPGSSFMYNTPPYGYVSQ--PPPPF
MFYRGY----PDGREMGAKRQRIADKGPS--FYANSPGSSFMYNAPPNGYASQ---PPHF
---------------MASKRQRTVDAGSS--FYG-SPGSSYMYNPSPYGYVSQ-PPPPPF
MFYRGKFADGGDGREMASKRQRTVDPGSS--FYGTSPGSSFLYNPSPYGYVSQPPPPPPF
MFYRGKFADGGDGREMAAKRQRTVDPGSS--FYGASTGSNFMYNPSPYGYVSQ-PPPPPF
MFYRGKFADGGDGREMAAKRQRTVDPGSS--FYGASTGSNFMYNPSPYGYVSQPPPPPPF
2: 3-3
estExt_fgenesh4_pg.C_LG_IX1049 0 2 U2 GTACGTGC..GCAG
chr6.LjT30N23.10.nd 0 2 U2 GTAACACT..ATAG
Glyma08g45060.1 0 2 U2 GTACCACT..GCAG
Glyma18g07860.1 0 2 U2 GTACCACT..GCAG
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
PGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNR
PAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNR
PVVRLRGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNR
PVVRLRGLPFDCTETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNR
PVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNR
PVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNR
PVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKSGKFTGEGFCVLGYPLQVDFALQRNR
PVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNR
PVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNR
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
QNMGRRYVEVFRCKKQEYYSAIANEVSQ--------------------------------
QNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGR
QNMGRRYVEVFRSKRQEYYKAIANEVSDTR------------------------------
QNMGRRYVEVFRSKRQDYYKAIANEVSESR------------------------------
QNMGRRYVEVFRSKRQDYYKTIANEVSESR------------------------------
QNIGRRYVEVFRSKRQEYYKAIANEVSDAR------------------------------
QNMGRRYVEVFRSKRQEYYKAIANEVSDAR------------------------------
QNMGRRYVEVFRSKRQEYYKAIANEVSDAR------------------------------
QNMGRRYVEVFRSKRQEYYKAIANEVSDAR------------------------------
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
--GGYFESECRRSSPPPRPPKKTAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELT
ISGG--SS-PRRHVQRARS---SDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELS
--GG--S--PRRTAPKAKS---NDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLS
--GS-----PRRNISRAKS---YDEGKDLAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLS
--GS-----PRRNIPRAKS---YDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFVLS
--GG--S--PRRSAPRAKS---YDEGKDSAEHTGVLRLRGLPFSANKDDIMDFFKEYVLS
--GG--SPPPRRSASRAKS---YDEGKESAEHTGVLRLRGLPFSASKDDILDFFKDFALS
--GG--S--PRRSASRAKS---YDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFGLP
--GG--S--PRRSASRAKS---YDEGKESAEHTGVLRLRGLPFSASKDDIMEFFKDFGLP
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
EENVHIAIRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRARTR
EDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSR
EDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLEELDEAVAR
EDLIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSIEELDEAVSR
EDSIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSVEESDEAVSR
EDSIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGSRYIELFPSTHGEMEDAISR
EDSIHIVMNSEGRPSGEAYVEFVDAEDSKAAMAKDRMTLGSRYIELFPSSHNEMEDAGSR
EDSIHIIMNSEGRPSGEAYAEFASAEDSKAAMVKDRMTLGSRYIELFPSSPGEMEEAISR
EDSIHIIMNSEGRPSGEAYAEFESAEDSKAAMIKDRMTLGSRYIELFPSSHGEMEEAISR
Zm~GRMZM2G159028_T02
At~AT3G20890.1
Vv~GSVIVP00024603001
Pt~gw1.I.1527.1
Pt~estExt_fgenesh4_pg.C_LG_IX1049
Mt~CT009558_56.2
Lj~chr6.LjT30N23.10.nd
Gm~Glyma08g45060.1
Gm~Glyma18g07860.1
GRH
GR-
GR-
GR-
GR-
GR-
RR-
GR-
GR-


3' UTR introns