SRGD Gene ID 979 BLASTp at NCBI n/a n/a  
OrganismsAt ,Zm ,Os ,Sb ,Vv ,Gm ,Pp ,Lj ,Pt
Gene count9
Cintron count18
Cintron classesU2 ,im ,absent ,GC ,em
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 --QIAVEGCVHGHLDDIYATLQHLERVENVKIDLLICCGDFQAIRNEDDMESLACPPKYR
-MKIAVEGCMHGELDKVYDTLRELEKAEGVKIDLLLCCGDFQAVRNENDLQCLNVKPRFR
-MKIAVEGCMHGELDIVYDTLRRLEEAEGVKIDLLLCCGDFQAVRNENDLQCVSVPQKYR
-MKIAVEGCMHGELDIVYDTLRKLEEAEGVKIDLLLCCGDFQAVRNENDLQCVNVPQKFR
-MKIAIEGCMHGDLDNVYKTIQHYEQIHNTKVDLLLCCGDFQAVRNEKDMDSLNVPRKYR
-MKIAVEGCMHGDLDNVYRTLQQLEKSENTKIDLLLCCGDFQAVRNEHDLKSLNVPLKYR
-MKIAVEGCMHGDLDKVYKTLQHMEKTQNTKIDLLLCCGDFQAVRNENDLKSLNVLPKYR
MVKIAVEGCMHGDLDNVYSTLRYLEEVENTKIDLLICCGDFQAVRNKKDLESLNVPPKYR
-MKIAIEGCMHGDLDKVYQTLKLIESQNGTKIDLLLCCGDFQAVRNERDMESLNVPLKYR
2: 1-2
LOC_Os03g51540.1 0 0 U2 GTGAGTCA..GCAG
GRMZM2G461145_T01 1 0 U2 GTAAGCGA..GCAG
estExt_Genewise1.C_chr_11958 0 0 U2 GTAAGAGA..GCAG
AT4G31770.1 0 0 U2 ..
3: 41-41
LOC_Os03g51540.1 1 0 U2 GTGAGCAG..GCAG
GRMZM2G461145_T01 2 0 U2 GTAGGCTC..CCAG
estExt_Genewise1.C_chr_11958 1 0 U2 GTATGCTT..CCAG
GSVIVP00015037001 0 0 U2 GTACGTAT..ACAG
estExt_fgenesh4_pg.C_LG_XVIII0523 0 0 U2 GTACTAAA..TTAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 SMNSFWKYYAGVERAPYPTIFVGGNHEASNYLWDLYYGGFVAPNIYFLGFAGVVKFGGVR
EMKSFWKYYSGQAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIR
TMNTFWKYYSGEAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIR
AMNSFWKYYSGEAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIR
EMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAATNIYFLGFAGVVKFGNVR
SMNSFWKYYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGAAGVVRFGNVR
EMKSFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGWVAPNIYYLGAAGVVRFGNIR
SMNSFWKYYSGQEVAPFPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIR
EMKSFWKYYSGREIAPVPTIFIGGNHEASNYLWELCYGGYAAPNIYFLGFAGVIKFGNIR
4: 93-93
LOC_Os03g51540.1 2 2 U2 GTGAGTCT..ATAG
GRMZM2G461145_T01 3 2 U2 GTGAGTGT..TCAG
estExt_Genewise1.C_chr_11958 2 2 U2 GTGAGTCT..TCAG
Glyma04g06310.1 0 2 U2 GTCAGTTC..GTAG
chr1.CM0133.1540.nc 0 2 U2 GTGAGTAT..GTAG
GSVIVP00015037001 1 2 U2 GTGAGTAA..TTAG
estExt_fgenesh4_pg.C_LG_XVIII0523 1 2 U2 GTAAGCAT..TTAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 IAGLSGIYKEGDYRKG---------HFERYPYDPSDLRSVYHVREYDVNKLLQLQGAIDV
IGGLSGIYKQQHYHLG---------HYERPPYNENTIRSVYHVRHYDVLKLMHVKEPLDI
IGGLSGIHNKHHYHLG---------HYERPPYNKDTIRSVYHVRHYDVLKLMHLKEPLDV
IGGLSGIYNKYRYHLGKSLIATYAGHYERPPYNEDTIRSVYHVRHYDVLKLMHLKEPLDI
IGGLSGIYNERHYRSG---------HFERPPYNESTIRSVYHVRDYDVQKLMQLEEPLDI
IGGLSGIYKSFDYKLG---------HFERPPYDHNTIKSVYHVREYDVRKLMQVKEPIDV
IGGLSGIFNGRHYNLG---------HFERPPYDQSTIRSVYHVREYDVQKLNQVQEPIDI
IGGLSGIYNERHYHLG---------HYERPPYNERDIRSVYHVREYDVHKLMQVEEPIDI
IGGLSGIYNARNYRTG---------HHERAPYNESSIRSVYHVREYDVHKLMQVEEPIDI
5: 134-137
LOC_Os03g51540.1 3 1 GC GCAAGTTT..GCAG
GRMZM2G461145_T01 4 1 GC GCAAGTCT..ACAG
estExt_Genewise1.C_chr_11958 3 0 U2 GTTTTTGT..CAAG
Glyma04g06310.1 1 1 U2 GTTGGTTA..GTAG
chr1.CM0133.1540.nc 1 1 U2 GTTGTTTA..GCAG
GSVIVP00015037001 2 1 U2 GTTGGTTA..GCAG
estExt_fgenesh4_pg.C_LG_XVIII0523 2 1 U2 GTAAAGAA..GCAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 FVSHDWPRGVVKHAPQRDVEQLLRHKPFFRKEVEQDILGSTPGKELLHKLKPEYWFSAHL
FMSHDWPLGITEYG---NWQKLIREKRFFEEEVNKRTLGSEPAARLLNKLKPPYWFSAHL
FLSHDWPLGITEYG---NWQKLISVKKNFEDEVNNRTLGSKPAAELLNKLKPPYWFSAHL
FLSHDWPLGITEYG---NWQKLISVKKHFEEEVNNRTLGSKPAAELLNKLKPPYWFSGHL
FLSHDWPVGITDYG---DSESLMRQKPYFRQEIEEKTLGSKPAALLLEKLKPQYWFSAHL
FLSHDWPVRITDYG---DWRELVRRKHYFKQEIEEKRLGSKPAAELLEKLKPHYWFSAHL
FLSHDWPVRITDYG---DWEELVRKKSDFKQEIEEKRLGSKPAALLLERLKPHYWFSAHL
FLSHDWPCGITDHG---NWKELVRYKPFFEKEIQERTLGSKAAAELLEKLKPSYWFSAHL
FLSHDWPVGITDCG---NWKQLVRYKPHFEKEIQEKSLGSKAAAQLLEKLRPAYWFSAHL
6: 211-211
LOC_Os03g51540.1 4 0 U2 GTAATACC..TCAG
GRMZM2G461145_T01 5 0 U2 GTGATGTA..CTAG
estExt_Genewise1.C_chr_11958 4 0 U2 GTAATGCC..CCAG
Glyma04g06310.1 2 0 U2 GTGAGATT..CCAG
chr1.CM0133.1540.nc 2 0 U2 GTAAGATT..CCAG
GSVIVP00015037001 3 0 U2 GTAATTAA..TCAG
estExt_fgenesh4_pg.C_LG_XVIII0523 3 0 U2 GTGGGTGT..TCAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 HTKFAAVIHH-PNKKATKFLALDKCLPRRNFLQVFDVADTDSPLEFTYDDDWLAITRAHH
HCKFPAVIQHGEGGPTTKFLALDKCLPRRGFLQVIDIPSGPGPHEIQYDEEWLAITRKFN
HCKFPAVIQHGKNGPTTKFLALDKCIPGRNFLQVIDIPSNPGPYEIQYDEEWLAITRKFN
HCKFPAIIQHGKNGPTTKFLALDKCIPGRNFLQVIDIPSNPGPYEIQYDEEWLAITRKFN
HCKFAAAVQHGNDGSVTKFLALDKCLPGKKFLQIIEIESEPGPFEVLYDEEWLAITRKFN
HCKFAALVQHGEGGPLTKFLALDKCIPGRDFLQIVEIESDAGPYEIQYDEEWLAITRKFN
HCKFSALVQHGEGGPLTKFLALDKCIPGRDFLQIVEIESEPGPYEILYDEEWLAITRRFN
HCKFAALVQHGEVGQVTKFLALDKCLPGRKFLQIVEIETVPGPYEIQYDEEWLAITRKFN
HCKFAAVVQHGEGGPLTKFLALDKCLPRRKFLQVIEIESEPGPYEIQYDEEWLAITRKFN
7: 272-272
LOC_Os03g51540.1 5 0 U2 GTGCCCTT..TTAG
GRMZM2G461145_T01 6 0 U2 GTACTCTC..TTAG
estExt_Genewise1.C_chr_11958 5 0 U2 GTGCTCTC..TTAG
Glyma04g06310.1 3 0 U2 GTATAGGC..TTAG
chr1.CM0133.1540.nc 3 0 U2 GTAAAATG..TTAG
GSVIVP00015037001 4 0 U2 GTAGCCCT..TTAG
estExt_fgenesh4_pg.C_LG_XVIII0523 4 0 U2 GTACTTAT..GCAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 PQMPLSRRPVQ-------------W-----------------------------------
NVFSLTRMPFTMLDEQVDTQDDLQWVRNKLNARGAKPIDFVQTAASY-DPSCQASNPSIT
SVFPLARTQFTMRDEQLDTQEDRQWVRSKLNTRGAKPFDFVQTAPSF-NPSSTTSKQSIT
SVFPLARTRFTMRDEQLDTQEDRQWVRSKLNTRGAKPFDFVQTAPSF-NPSNTISKHSTT
SIFPLTRRYTNVSTAG-TIQESREWVRKKLEERQFKPFEFARTVPAY-NPSQRVFD-SIP
PIFPLTYKGADFRGINLEMEDCLEWVRSKLQERGCKPFEFVRTAPCY-DPSRSNFDGAFA
SIFPLTTKGADFRAVNLEMEDCREWVRSRLRERGCKPFEFVKTAPCYDDPSQSSSDGAFT
SIFPLTIHRANLGGAQVDMQDCRDWVRSRLLTRGAKPFEFVQTVPCY-DPSQSASNSCFS
SIFPLTFKNANFGATQLEMEDCRQFVSSRLQERGTKPFEFTQTAPPF-DPTQSGPNGSFS
8: 311-311
LOC_Os03g51540.1 6 2 U2 GTCAGTGC..ACAG
GRMZM2G461145_T01 7 2 U2 GTCGGTGC..AAAG
estExt_Genewise1.C_chr_11958 6 2 U2 GTTGGTGC..AAAG
Glyma04g06310.1 4 2 U2 GTGTGTGT..ACAG
chr1.CM0133.1540.nc 4 2 U2 GTGTGTAA..ACAG
GSVIVP00015037001 5 2 U2 GTCTGTGT..GTAG
estExt_fgenesh4_pg.C_LG_XVIII0523 5 2 U2 GTGCGTAT..ATAG
9: 359-359
LOC_Os03g51540.1 7 1 U2 GTGAGCTT..ACAG
GRMZM2G461145_T01 8 1 U2 GTAAGTTT..ACAG
estExt_Genewise1.C_chr_11958 7 1 U2 GTAAGTTT..ACAG
Glyma04g06310.1 5 1 U2 GTATTTCT..GCAG
chr1.CM0133.1540.nc 5 1 U2 GTATTTCT..GCAG
GSVIVP00015037001 6 1 U2 GTAAGGGT..GTAG
estExt_fgenesh4_pg.C_LG_XVIII0523 6 1 U2 GTAATGGT..GCAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 ------------------------------------------------------------
VHCRNPQTESFLQLLNLPYLLDS----------SNSYGVSRNESSS----QTG-------
VCCRNPQTESFLQLLELPYLLDS----------SKSEMFGRNESTS----QTG-------
VCCRNPQTESFLQLLELPYLLDSSNSEGHYLKKSNSEGFGRNESSS----QPG-------
EIPQNPQTLSLLELLGLPYLLDS----------SPVTGERTDIPAS--LAPSDL------
VNPRNPQTESFVRLLELPYLFDR----------NPEAKDLSPYPSP--SIQRG-------
ASPRNPQTESLLQLLELPYLLDR----------NPEEKNLSPYPSP--SIQRGP------
GYHRNPQTELLLQFLELPYLLDN----------TLESRDPTHSPMS--LISRGI------
GCPRNPQTESLLQLLELPYLLDS----------TSESREGRYSPSASQLIQRGVSYLLIL
10: 396-396
LOC_Os03g51540.1 8 1 U2 GTATGTAA..ACAG
GRMZM2G461145_T01 9 1 U2 GTATGTTT..ACAG
estExt_Genewise1.C_chr_11958 8 1 U2 GTATGTCT..ACAG
11: 411-411
Glyma04g06310.1 6 1 U2 GTAAAGTT..CTAG
chr1.CM0133.1540.nc 6 1 U2 GTAACTTT..CCAG
estExt_fgenesh4_pg.C_LG_XVIII0523 7 1 U2 GTAAAATT..AGAG
Pp~e_gw1.101.51.1
Os~LOC_Os03g51540.1
Zm~GRMZM2G461145_T01
Sb~estExt_Genewise1.C_chr_11958
At~AT4G31770.1
Gm~Glyma04g06310.1
Lj~chr1.CM0133.1540.nc
Vv~GSVIVP00015037001
Pt~estExt_fgenesh4_pg.C_LG_XVIII0523
 ---------------------------------------------
---------QALDSDDIELPDDEDDPADDDD--------------
---------NTLDNEDIELPDEDEDALEDDE--------------
---------NTLDDEDIELPDEDEDALEDDE--------------
---------PTYDSEEIPIDDIDEIEEMEEAKADDHTRDDA----
---------TAYDSEDIPIDDVADDDDDDEELPKVDNVETETSNL
---------VAYDNKDIPIDDVDDDDEDVDCH-------------
---------FSHSLSVV----VEVGQLLSFCL-------------
NQFYKYAGSFVHNSEEIPIDDVDESELEEA--DDVDTRKE-----


3' UTR introns