SRGD Gene ID 978 BLASTp at NCBI n/a n/a  
OrganismsAt ,Lj ,Sb ,Pt ,Os ,Gm
Gene count9
Cintron count14
Cintron classesU2 ,im ,em ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
MAGYRSRSPSGSYSPRRRYSRSPPRRKRYDDPRDRYRWAGAGGG----GDRRGY--GRPS
MAGYRSRSRSYSPQPRRRYSRSPPRYKRYDDPRDRYPRGGGGGGGGGEGPRRGY--GRPP
MAGYRSRSRSYSPQPRRRYSRSPPRYKRYDDPRDRYPRGGGGGGGGGEGPRRGY--GRPP
MARARSRSRSYSPRPRDRSP--PRERKGYDD--NRL------------RERPSSRDHESS
MGRYRSRSRSYSPRRRSRTPP-PRGRKRYDD--DR---------------TRSYRDRRSP
MGRYRSRSRSYSPRRRSRSPPAPRGRKRYVD--DRY------------GDSRSYRDRRSP
MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVD--DRY------------GDSRSYRDRRSP
MPRHRSRSRSYSPGRRSRTP--PRGRKRYDD-EDRH------------RDTRSYRDRRSP
--------RSYSPRRRSRTP--PRGRKRHDD-EDRL------------RESRSYRDRRSP
2: 0-0
AT5G18810.1 0 0 U2 ..
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
AQSGLLIRNISLTARPEDIRVPFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVA
APTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVA
APTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVA
GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA
LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA
LPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEA
LPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEA
ASSGLLIRNLPLDARPEDLRGPFEKFGPLKDIYLPKNYHTGEPRGFGFVKYRYGEDAAEA
APSGLLIRNLPLDARPEDLRRSFEKFGPLKDIYLPKNYYTGEPRGFGFVKYRHSEDAAEA
3: 73-73
Sb01g034590 0 2 U2 GTGAATTA..GCAG
LOC_Os03g24890.1 0 2 U2 GTGCGTAG..GCAG
LOC_Os03g24890.2 0 2 U2 GTGCGTAG..GCAG
chr4.LjT32J05.120.nc 0 2 U2 GTATACGC..GCAG
Glyma07g38270.1 0 2 U2 GTCATCTC..GCAG
Glyma17g02470.1 0 2 U2 GTCACCTC..GCAG
estExt_fgenesh4_kg.C_LG_X0007 0 2 U2 GTCCTTTG..GCAG
4: 99-99
Sb01g034590 1 2 U2 GTAATAGT..ACAG
LOC_Os03g24890.1 1 2 U2 GTAATAAT..GTAG
LOC_Os03g24890.2 1 2 U2 GTAATAAT..GTAG
chr4.LjT32J05.120.nc 1 2 U2 GTATCTGC..GTAG
Glyma07g38270.1 1 2 U2 GTATTTCT..GTAG
Glyma17g02470.1 1 2 U2 GTAATTTC..GTAG
estExt_fgenesh4_kg.C_LG_X0007 1 2 U2 GTAATTGC..ATAG
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
KQEMNHQVIGGREISIVYAEENRKTPQEMRRRTRTSGRYMEGRYTRRSLSRS-PRSRSHS
KQELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDGSHRRRSVSRS-PRSRYHS
KQELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDGSHRRRSVSRS-PRSRYHS
MKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGD---YKRTSHRS-PRRRYRS
KHHLNHTIIGGREIRIVFAEENRKTPQEMRVTSRPSSRHGGG--RRRTGTRSPPRRRYHS
KQHLNHTIIGGREIRIVFAEENRKTSQEMRVNTRGSGRHGGG--RRRNRTRS-PRPR--S
KQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGG--RRRNHTRS-PRRRYRS
KKRMDHKIIGGREIRIVFAEENRKTPQEMRRTPRTSDRHGGS-HGGRTPPRS-PRHRYRS
KQRMDHKTIGGREIRIVFAEENRKTPQEMRRTTHVR------------------------
5: 154-154
Sb01g034590 2 2 U2 GTTCATTT..GTAG
LOC_Os03g24890.1 2 2 U2 GTGCTTAA..GTAG
LOC_Os03g24890.2 2 2 U2 GTGCTTAA..GTAG
chr4.LjT32J05.120.nc 2 2 U2 GTGTGTGA..GTAG
Glyma07g38270.1 2 2 U2 GTGTGACT..TAAG
Glyma17g02470.1 2 2 U2 GTGTGACT..TAAG
estExt_fgenesh4_kg.C_LG_X0007 2 2 U2 GTGTGTCA..CTAG
6: 176-178
Sb01g034590 3 1 U2 GTAAGTGT..ACAG
LOC_Os03g24890.1 3 1 U2 GTAAGTAT..TCAG
LOC_Os03g24890.2 3 1 U2 GTAAGTAT..TCAG
chr4.LjT32J05.120.nc 3 1 U2 GTCAGTTC..GCAG
Glyma07g38270.1 3 1 U2 GTCAGTTT..GCAG
Glyma17g02470.1 3 1 U2 GTCAGTTT..GCAG
estExt_fgenesh4_kg.C_LG_X0007 3 1 U2 GTTAGTTC..ACAG
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
YSPSPSPVRRDFSQQRI-------------------------------------------
YSPSPSPARRDYRDHRD----DYSPGE-------SLSPHGQDKR-------HHRSNGRSA
YSPSPSPARRDYRYHLNILVFTYSIAN-------TLVLSCLSVF-------HSFSFQTSL
HSRSRSPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREY--------KSRNCRSP
YSRSPSPARDDSR-GRD----DYYSPERSRSYSRSRSPSGGKDY---RRSPHPRENGRSP
YSRSPSPARDDSRDGRGRD--DYYSPERSRSYSRSLSPSGGKDY---KKSPRLRENGRSP
YSRSPSPARDDSRDGRGRD--DYYSPERSRSYSRSLSPSGGKDY---RKSPRLRENGRSP
YSRSPSPARHDSRYHGVKE--DYCSPRRSRSISRSRSPRDERDFQVDQRSLSPSEKGRNP
------------------------------------------------------------
7: 191-192
Sb01g034590 4 2 U2 GTTTGAAT..CCAG
LOC_Os03g24890.1 4 2 U2 GTATCATC..ACAG
chr4.LjT32J05.120.nc 4 2 U2 GTTTGAGC..GCAG
Glyma07g38270.1 4 2 U2 GTATGAAC..ATAG
Glyma17g02470.1 4 2 U2 GTATGAAT..ATAG
estExt_fgenesh4_kg.C_LG_X0007 4 1 U2 TTGATTTT..ATAT
8: 194-194
estExt_fgenesh4_kg.C_LG_X0007 5 0 U2 GAAGTAGA..TCGC
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
------------------------------------------------------------
SPDELE-----------------------RHVSPSNNGHGPPVDGKS-------------
CQVIYLCFR---------------------HILIRR------------------------
REERVLTP-----------------------IRSRCLSRSRSRSLSR-------------
NDKRDQSPSRSLSPRRDDPSNEKRDRAPNRSVSPRRDDRSPSRSRSRSYRYIFTVFIESL
NDKKDQTPR--------------------RSESPRDNDCSPSRSHSR-------------
NDKKDQTPS--------------------RSESPRGNDRSPSRSRSRSYRYEFYFY----
KERNHASRG---------------------SRTLRANSRSPSRSHSQSYGSR--------
------------------------------------------------------------
9: 288-288
estExt_fgenesh4_kg.C_LG_X0007 6 2 U2 GTAAGTAC..GCAG
Sb~Sb01g034590
Os~LOC_Os03g24890.1
Os~LOC_Os03g24890.2
At~AT5G18810.1
Lj~chr4.LjT32J05.120.nc
Gm~Glyma07g38270.1
Gm~Glyma17g02470.1
Pt~estExt_fgenesh4_kg.C_LG_X0007
Pt~gw1.VIII.2127.1
---------------------
---------------------
---------------------
---------------------
LCLIFFSSNMIVNDAVEILKL
---------------------
---------------------
---------------------
---------------------


3' UTR introns