SRGD Gene ID 868 BLASTp at NCBI n/a n/a  
OrganismsPt ,Os ,Sb ,Vv ,At ,Gm ,Zm ,Pp ,Lj
Gene count10
Cintron count24
Cintron classesU2 ,em ,absent ,im
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 ------------------------------------------------------------
MDNSHEQPLPPGVGAWPPPPSIHPAKFQPNPQPYATPYGATPNNGSNHNAASYSAAAQPT
MDNTQNQPLPPGVGTWPQAPPSHPPQCDADPQSYHPQFDTRPDNAS--------------
MDNSQNQPPPPGVGTWPQTPPSHPPQCHADPQSYHPQFAARPDNAS--------------
------------------------------------------------------------
--------------------MGEELQYQQNGSSVTSNYGYGSSLAY--------------
------------------------------------------------------------
------------------------------------------------------------
--------------------MQSHPESNGSQLLHGGHQTAADGIGLRSLNQTGTAEAVPM
------------------------------------------------------------
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 -----------------------------MEAAVQEAVLREQEASAHDVIAQHRDNRAFD
MPFPNMDAGGAQSNQTAHEVSNHNDSAADIESAVQEAVLREQDIETQQVIQNQRQAKATI
--------------------ANSSGSAANIESAVQEAVLHAQDIETQQVIQNQRHANTTS
--------------------ANNSGSSANIESAVQEAVLHAQDIETQQVIQNQRYANTTS
------------------------------------------------------------
------------------------DQSQDIESAANTALLREQEIETQKIIQGQREAGTSV
------------------------------------------------------------
------------------------------------------------------------
HHYDQIPQETSASFGWDNRVSGNDRSMGDIETAACDAVLREQEIATQRIIHSQRQAKGES
------------------------------------------------------------
2: 101-101
LOC_Os01g68760.1 1 0 U2 GTATTCAT..CTAG
Sb03g043740 1 0 U2 GTATTCAT..CTAG
AT2G41020.1 0 0 U2 GTACACTT..TCAG
GSVIVP00023325001 0 0 U2 GTTTGTGG..TCAG
3: 112-112
e_gw1.245.68.1 0 2 U2 GTATGTGA..GAAG
LOC_Os01g68760.1 2 2 U2 GTTGGTTT..TCAG
Sb03g043740 2 2 U2 GTGTGTTT..TCAG
AT2G41020.1 1 2 U2 GTTCTGTC..TCAG
GSVIVP00023325001 1 2 U2 GTTAGTTT..TTAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 TL-DTSERDVLSARHDEGTLKEKLLKMTSEHRLEMASKRGRPTQLEQGQNMEIGNGYGVP
EP-TQYGEDLLSNRRNPNALKEHLLKMTAEHRAEMANKRGKP-LHADNGNVEIGNGYGVP
EP-TTYGEDLLSNRRDPSALKEHLLKMTADHRAEMASKRGKP-LHPNNGNYEIGNGYGVP
EP-TKYGEDLLSNRRDPNALKEHLLKMTADHRAEMASKRGKP-LHPNNGNCEIGNGYGVP
---------------------------------------------MLTGNCEIGNGYGVP
AGDSKHNTDILRDRADPNALKEHLLKFTANHRAEAAAKRGGSVSTCGEGNVDVGNGYGIP
------------------------------------------------------------
------------------------------------------------------------
EPSMDNTDILSGRRHDPNALKEHLLKMTTEHRAEMALKRGKS-TLREEGNIEIGNGYGVP
------------------------------------------------------------
4: 140-140
e_gw1.245.68.1 1 0 U2 GTGAGAAT..GCAG
LOC_Os01g68760.1 3 0 U2 GTTCACAG..TCAG
Sb03g043740 3 0 U2 GTGATTGA..TTAG
AT2G41020.1 2 0 U2 GTTCTGAT..GCAG
GSVIVP00023325001 2 0 U2 GTGTGTAT..ATAG
5: 167-167
e_gw1.245.68.1 2 1 U2 GTTATGGT..GCAG
LOC_Os01g68760.1 4 1 U2 GTATTTCA..CCAG
Sb03g043740 4 1 U2 GTCATTGT..ACAG
AT2G41020.1 3 1 U2 GTTAGTCA..CTAG
GSVIVP00023325001 3 1 U2 GTTGATTC..TCAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 GGGAYYNIIDVQAGALGRDVDQRVVTDLDGIGKKGDLPDFLKEKLQARGILKDGP----N
GGGAYY------AANMSSGQMNKPKDIADKAKGADDLPEFLRQRLRARGILKDEA----T
GGGAYY------AANLPSAQMNKPRDETDKAKCANDLPDFLKQRLRARGILKDET----A
GGGAYY------AANLPSPQMNKPRDETDKAKCANDLPDFLKQRLRARGILKDET----T
GGGAYY------AANLPSPQMNKPRDETDKAKCANDLPDFLKQRLRARGILKDET----T
GGVAYA-------------GHSELSGKPEPTNASNNLPEYLKQKLKARGILRDGAGAVTS
------------------------------------------------------------
----------------------------------MTPPSFQNAAATPRSS---------N
GGEKLG------IGGNEGHKSPEINRESEEKSESKELPEYLKQKLRARGILKDDTAKGDP
------------------------------------------------------------
6: 181-181
GSVIVP00023325001 4 1 U2 GTGCTTAT..TCAG
7: 186-186
e_gw1.245.68.1 3 1 U2 GTGCACGT..GGAG
8: 200-200
LOC_Os01g68760.1 5 1 U2 GTATAGCA..TCAG
Sb03g043740 5 1 U2 GTATGTCA..TCAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 NIIQNVVS--NSGPTFHQLNLVYMLPPGWVEGKDPESGVTYYYNQTTGKSQWERPAPKAL
NNRFTIKQ--NVDSPVGQIKAAQELPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLN
NKNNMSTQ--TVDSQQSQNKSAQELPHGWVEAKDLTTGAPYFYNQSTGVSQWDRPGSVVN
NKNYTSTQ--TVDSQEIENKSAQELPPGWIEVKDPTTGAPYFYNQSTGVSQWDRPDSVVN
NKNYTSTQ--TVDSQEIENKSAQELPPGWIEVKDPTTGAPYFYNQSTGVSQWDRPDSVVN
NPEDTSAVSWNRQATLPFQANASTLPLGWVDAKDPASGATYYYNQHTGTCQWERPVELSY
------------------------------------------------------------
TQRDLGTQ--PRPLQPATTAATCDPLHTAASSDDPRRERRFIPKKEIGLSTR--------
HINTFKAM--KLEAQSTQTTAPAKLPTGWVEAKDPASGASYYYNENTGMSQWERPVETSF
------------------------------------------------------------
9: 243-243
AT2G41020.1 4 0 U2 GTAATTAT..CCAG
10: 247-247
GSVIVP00023325001 5 0 U2 GTTAGAAG..TCAG
11: 250-250
LOC_Os01g68760.1 6 0 U2 GTAAGTTA..GCAG
Sb03g043740 6 0 U2 GTAAGTTG..ACAG
12: 261-261
e_gw1.245.68.1 4 1 U2 GTGCAGGC..ACAG
13: 268-268
e_gw1.245.68.1 5 0 U2 GTATGCAA..CCAG
LOC_Os01g68760.1 7 0 U2 GTAAGTAA..TTAG
Sb03g043740 7 0 U2 GTGAGTTT..TCAG
AT2G41020.1 5 0 U2 GTATGAAT..TCAG
GSVIVP00023325001 6 0 U2 GTGAGTTT..GTAG
14: 278-278
Glyma02g22520.1 0 2 U2 GTGACGAG..GTAG
15: 291-291
Glyma02g22520.1 1 1 U2 GTTGCATG..ACAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 LLPPPPPPSLSLLPADWQEATDSAS-----------------------------------
TMQHQAPPSSS-LPENWEEALDQST-----------------------------------
TMQHQVSPS---LPENWEEAIDKST-----------------------------------
IMQHQVSPS---LPENWEEAIDKST-----------------------------------
IMQHQVSPS---LPENWEEAIDKST-----------------------------------
ATSSAPPVL---SKEEWIETFDEAS-----------------------------------
------------------------------------------------------------
------------------------------------------------------------
SSQPPSPLS---LPEDWEEALDVTTAQKKWGHTQCIQAVEPSAFGPTILLHEKILMTQVH
------------------------------------------------------------
16: 324-324
e_gw1.245.68.1 6 1 U2 GTATTCTC..GCAG
LOC_Os01g68760.1 8 1 U2 GTGCTATA..TTAG
Sb03g043740 8 1 U2 GTAGAAGA..TTAG
AT2G41020.1 6 1 U2 GTATGATT..ACAG
GSVIVP00023325001 7 1 U2 GTAAACCA..GAAG
17: 337-337
GSVIVP00023325001 8 2 U2 GTACACAA..AAAG
18: 348-348
GSVIVP00023325001 9 1 U2 GTCTTTGA..TAAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 -------GQKYYYNIKTNETRWER-------PTGAAADDNSENHASTGNGDVSSAA-ING
-------GQKYYYNTNTQATQWEP-------PTAVNPGVAPHAPTNAAVEMAAQNTDIWN
-------GHKYYYNTKTQTTQWEP-------P-SVSTSVTPPASTNTAIEPVAQTADIWN
-------GHKYYYNTKTQTTQWEP-------PTSVNTSVRPPASTNTAVEPVAQAADIWN
-------GHKYYYNTKTQTTQWEP-------PTSVNTSVRPPASTNTAVEPVAQAADIWN
-------GHKYFYNTRTHVSQWEP-------PASLQKPAATNSNNAVTQSTANGKGEHPP
-------------------SSW--------------------------------------
-------GHKYYYNTKTHVSQWER-------PNLVQEVVSNHS------DLSAGGGYDQS
QKIQPYIGQKYYYNRKTQASQWEPPNTVQQVPNTVQQVASGHSGNMVFSNAVNGNQDDRS
------------------------------------------------------------
19: 366-366
GSVIVP00023325001 10 1 U2 GTTCCTAG..ACAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 SKFKKCLGCQGWGRGLVQAWNYCNHCTRVLNIAVPPQHASLGAKRSAAAAAANSAADGEY
SQMQRCLGCGGWGVGLVQPWGYCNHCTRVQNLPF-QQYPSYPNNTTHSSSNKNP---GNV
SQMQRCLGCGGWGIGLVQPWGYCNHCTRVQNLPF-QQYPSYTSNTMHASGNNAPKTQGNV
SQMQRCLGCGGWGVGLVQPWGYCNHCTRVQNRPF-QQYPSYTNNTMHASGNNAPKAQGNV
SQMQRCLGCGGWGVGLVQPWGYCNHCTRVQNRPF-QQYPSYTNNTMHASGNNAPKAQGNV
SQLPRCSGCGGWGVGLVQRWGYCVHCTRVFNLPE-KQFLPAHLNHFTNAGDS-----GQK
------------------------------------------------------------
SNFPQCMGCGGWGVGLVQAWGYCNHCTRVLNLPQ-CQYLSSSLNNQQSSAAHPCESLDKK
AMLKRCMGCGGWGVGLVQMWGYCNHCTRVLNLPQ-SQYLASSLQQQSRSNVNIKGDSERK
------------------------------------------------------------
20: 446-446
e_gw1.245.68.1 7 2 U2 GTGCGAAT..ACAG
LOC_Os01g68760.1 9 2 U2 GTACTGTA..GCAG
Sb03g043740 9 2 U2 GTAATCTG..GCAG
AT2G41020.1 7 2 U2 GTAGGAAC..TCAG
Glyma02g22520.1 2 2 U2 GTAGAGAG..GCAG
GSVIVP00023325001 11 2 U2 GTATAGTG..GCAG
21: 477-477
e_gw1.245.68.1 8 0 U2 GTTGAGCC..TAAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 CFERRLGLKSPITKVNRRDPRKRGPVDSDVLDPMDPSSYSDAPRGGWGVGLKGQQPKAAD
AAKDRSSAKPPFGKANRKDHRKRNRPEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
SAKDRSSSKPPLGKPNRKDHRKRNRPEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
SAKNRSSSKPPLGKPNRKDHRKRNRPEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
SAKNRSSSKPPLGKPNRKDHRKRNRPEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
DPNQRSSSKPPMKKV---IGKKRAHAEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
--------KPPSDKGSKKLGKKRAHAEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
TSKQRSSSKPPFDKGGRKGGKKRTYAEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
PSKQRSNLKPPIGKGSKRDSRKRAYTEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAAD
---------------------------------MDPSSYSDAPRGGWVVGLKGVQPRAAD
22: 483-483
LOC_Os01g68760.1 10 2 U2 GTATATGA..GCAG
Sb03g043740 10 2 U2 GTATAATA..GCAG
AT2G41020.1 8 2 U2 GTACGCAT..ACAG
Glyma02g22520.1 3 2 U2 GTATAATT..CCAG
GSVIVP00023325001 12 2 U2 GTATCCTA..CCAG
23: 525-525
e_gw1.245.68.1 9 2 U2 GTAAGTCT..ACAG
LOC_Os01g68760.1 11 2 U2 GTACATGA..TCAG
Sb03g043740 11 2 U2 GTACATGA..GCAG
AT2G41020.1 9 2 U2 GTAATGTC..GTAG
Glyma02g22520.1 4 2 U2 GTATGTGT..TCAG
GSVIVP00023325001 13 2 U2 GTATGTCA..GTAG
grail3.0024018601 1 2 U2 GTATGTGA..GCAG
Pp~e_gw1.245.68.1
Os~LOC_Os01g68760.1
Sb~Sb03g043740
Zm~GRMZM2G168685_T01
Zm~GRMZM2G168685_T04
At~AT2G41020.1
Lj~LjSGA_058838.1
Gm~Glyma02g22520.1
Vv~GSVIVP00023325001
Pt~grail3.0024018601
 TTATGPLFQQRPYPSPGAVLRRNAELAGQQGKPAGPNFAPIHKRGDGSDGLGDAD
TTAAGPLFQQRPYPSPGAVLRKNAEVASHGKKRG---MAPITKRGDGSDGLGEAD
TTAAGPLFQQRPYPSPGAVLRKNAEVATHGKKRG---MAPITKRGDGSDGLGEAD
TTAAGPLFQQRPYPSPGAVLRKNAEVATHGKKRGG--MAPITKRGDGSDGLGEAD
TTAAGPLFQQRPYPSPGAVLRKNAEVATHGKKRGG--MAPITKRGDGSDGLGEAD
TTASGPLFQQRPYPSPGAVLRRNAEVASSQKKKPNSQFTEITKRGDGSDGLGDAD
TTATGPLFQQRPYPSPGAVLRKNAEIA-SQKKKPNSHFTAISKRGDGSDGLGDA-
TTATGPLFQQRPYPSPGAVLRKNAEIA-SQKKKPNSNFTPISKRGDGSDGLGDAD
TTATGPLFQQRPYPSPGAVLRKNAEIA-SQSKKPGSHYAPISKKGDGSDGLGDAD
TTATGPLFQQRPYPSPGAVLRKNAEVA-TQTKKSSSPYMPISKRGDGSDGLGDAD
24: 543-543
e_gw1.245.68.1 10 0 U2 GTAAGTTC..CTAG
LOC_Os01g68760.1 12 0 U2 GTATGTCA..ACAG
Sb03g043740 12 0 U2 GTATGTTC..TCAG
AT2G41020.1 10 0 U2 GTAATGGC..TCAG
Glyma02g22520.1 5 0 U2 GTATGTAC..TCAG
GSVIVP00023325001 14 0 U2 GTAAATAA..TCAG
grail3.0024018601 2 0 U2 GTATGCGA..TCAG