SRGD Gene ID 749 BLASTp at NCBI n/a n/a  
OrganismsAt ,Pt ,Pp ,Lj ,Vv ,Sb ,Os ,Gm ,Zm
Gene count11
Cintron count9
Cintron classesU2 ,em ,im ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
MAAMGQEDDDVDHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQ
MAATGQEGDDVDHYEVLCLPSGEEGAALTIEHIEKAYRTQSRLRHPDKRPDDPNATADFQ
MAALVQEADDVDHYEVLCLPSGEEGAALTVEQIEKAYRTQSRLRHPDKRPDDPNATADFQ
-------------------------------DIRKAYRKRALELHPDKRGDDPGAAVEFQ
--------MDVDHYNVLGLPSGEEGAKLTEKEIAKAYKLKALVLHPDKRPDDPNAHENFQ
------MEGFVDHYIVLGLASGEEALKLTEKEIAKAYKLKALDLHPDKRPDDPDAHEKFQ
------MDMNVDHYNVLGLPSGEEGAKLSEKEISKAYRVKALELHPDKRPDDPQAHANFQ
------MDAEIDHYAVLGLPSGEEGANLTEKEITKAYRWKALELHPDKKRDDPNAAANFQ
------MEAEMDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQ
------MEAEMDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQ
------MEAEIDHYAVLGLPSGEEGAKLTDKEINKAYRWKALELHPDKRPDDANAAANFQ
2: 6-6
AT5G23590.1 0 0 U2 ..
3: 54-54
gw1.8.103.1 0 1 U2 GTGGGTGA..TCAG
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
RLASSYNFLRDESLRRQFDARLRGRREAAARAAASGVKRRKAVSDLEERERAASTGQAVD
LLSSSYKLLRDESLRRQFDARLRGRREAAARAAATGVKRRKAVSDLEERERAAAAGHPAD
RLSSSYKLLRDESLRRQFDARLRGRREAAARAAAAGVKRRKAVSDLEERERAAAAGIPAD
KLQKAYEILNDERARASYDELLRVRKERVDKESKQSEKRQKMMRTLAEKEKAY------D
KLKLSYEVLKDEKARKLFDDLLRAKREQRARRGQQDAKRRRMVSDLEERERAAFA---VD
RLKTSYEVLKDEKARKLFDDLLRIQREKQHKKSQVDSKRRKMMSDLEERERSAFS---PN
KLKTSYEILKDEKARKLFDDLLRVKREQFHRQAQYDVKRRRMVSDLEERERAANA---PD
QLRTSYDILKDEKARKLFDDLLRVKRDHQRRQSQRDGKRRKMMDDLDRREREAST---AD
QLRTSYDILRDDKARKLFDDLLRVKRERELRNLQRDGKRRKMVSDLERRERDANA---PD
QLRTSYDILRDDKARKLFDDLLRVKRERELRNLQRDGKRRKMVSDLERRERDANA---PD
QLRTSYDILRDDKARKLFDDLLRVKRDRELRNSQRDGKRRKMVSDLERRERDANA---PD
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
AAEAARREDKRKAADVKRELEEFFAAKQSAS----SSTPPA-------SAPGAPQDAPKT
PEELAKREAQRMAADIERELAAFRAAKQASA-FGATSTSAH-----GDKKGGTPQDGVKT
PEELAKREAKRMAADIERELAAFRAAKQASA-SGAASTSAH-----GDRKGGTPQDAVKT
REQKVKLEEDYVQKQLKEQIASINKAHGRKS--PSFAAPEI-----PISNSNSEA----T
PAEVEKRRVEKIDKELRAQVDKIKAMFANKG------VPVV-----KKETVGVKESRIEE
PSARAYDEEERIARKLKEEIDRIRARHAKKK--SGFQTPESNVDEKRKEERSGAGASVQL
PASKAREEEERITKKLKEEIARIRAMHANKGASGSRKEAPG-----TRKESVADGGG-GL
PSVKEREEEARIARQLKEEIARIRAMHNKNA---VPDLATM-----KKESAGGGGGGVAV
PAAKEREEEARIARQLKEEIARIRAMHGKKE--EAPAAAPA-----KEKDSGGSSG---V
PAAKEREEEARIARQLKEEIARIRAMHGKKE--EAPAAAPA-----KEKDSGGSSG---V
PAAKEREEEARIARQLKEEIARIRAMHGKKE--EAAVKPAA-----KKKESGGGGGGGGV
4: 150-150
gw1.8.103.1 1 0 U2 GTAGCACG..AGAG
5: 158-158
GRMZM2G176499_T01 0 0 U2 GTAAGGGT..TCAG
estExt_Genewise1Plus.C_chr_111861 0 0 U2 GTAAGTGT..TCAG
6: 168-168
LOC_Os03g04400.1 0 0 U2 GTAAGGAT..CTAG
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
DKGKILKVSW---EGGADY-YNAAKLEEIFKQFGGVEDVVIKTRKS-RSRGSAIVVMASK
DKGKILKVSW---DGSADS-YSAAKLEEIFQKFGKVEDIVIKTRKS-RSKGSAIVVMGSK
DKAKILKVSW---DGSADS-YNAAKLEELFQKFGKVEDVVIKTRKS-RSKGSAIVVMGSK
EAERTLKVSWTCLEGGAGD-YSAAQLEKIFQEFGEIQDLVVRARKS-LKKRSALVVMATK
DEKKILNVRW---EKVDSEGYSAERLRELFSKFGEVKDVVIRSNKEKKKRGQALVEMATE
DKERMLKVSW---EKSGEG-YTAGRLREVFSEFGEVEDVVIRST---KKKCSALIVMATK
NKEKVLKVSW---EKGGED-YTAEGLREVFAKFGEVEDVVLKSS---RKKGSALVVMASK
DQEKVLKVSW---EKVGED-YPAEKLRELFSKFGEVEDVVIKGS---KKRGSAL------
DQEKVLKVSW---EKVGED-YSADKLRELFSKFGEVEDVVIKGS---KKKGSALVVMAIK
DQEKVLKVSW---EKVGED-YSADKLRELFSKFGEVEDVVIKGS---KKKGSALVVMAIK
DQEKVLKVSW---EKVGED-YAADKLRELFSKFGAVEDVVIKGS---KKKGSALVVMATK
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
EAALSALQNHSVYNVFSVPLIVAPVQESGGVPTR--STHTPETRPSNLGGTGFNDLEASV
EAALLAIQN--HFSLF--PLNVAPVQESGGLSTR--PTETYESRTNNTDGTGFNDLEASV
EAALLAIQN--HFSLF--PLNVAPVQESGGLPAR--SAQTYESTASNIDGTGFSDLEASV
QAAVLATES--VCGEYSNPLLVLPL-----------------------------------
EAAVAALGN--VYGNLSNPLLVLPYGKKVAATTI---PTRESDGLNIFSGINHQAYEDNI
DGAVAATRT--LCGNLSNPLLVVPLQKAAQTDFLTAKKSAEAEPQSNIVGAGLQAYEDAV
EAAVAATGN--VCGHISNPLLVLPLEPAVVMEFP--PRSMEPEPSSNLVGAGYQSFEESV
------------------------------------------------------------
EGAVAATGS--VIGHLANPLLVVPLKPASVADSSSVPKSAETTRMSNLVGAGYQAFEDSV
EGAVAATGS--VIGHLANPLLVVPLKPASVADSSSVPKSAETTRMSNLVGAGYQAFEDSV
EGAVSATGS--VIGHLANPLLVLPLKPATVADSSSVPKSAETTRMSNLVGAGYQAFEDSV
7: 242-242
LOC_Os03g04400.1 1 0 U2 GTAAGTCC..ACAG
GRMZM2G176499_T01 1 0 U2 GTAAGTCC..ACAG
estExt_Genewise1Plus.C_chr_111861 1 0 U2 GTAAGTCC..ACAG
gw1.8.103.1 2 0 U2 GTAAGTGA..TCAG
eugene3.00090311 1 0 U2 GTAAGTTT..GTAG
GSVIVP00038614001 0 0 U2 GTGAGTAT..ACAG
Glyma20g24050.1 0 0 U2 GTAAGTTT..CCAG
Glyma20g24050.2 0 0 U2 GTAAGTTT..CCAG
Glyma10g42950.1 0 0 U2 GTAAGTTT..CCAG
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
FRKLQEAQKRKQSG----------------------------------------------
FRKLREAQKRKHFG----------------------------------------------
FRKLQEAQKRKQCG----------------------------------------------
------------------------------------------------------------
LEKLQKVS----------------------------------------------------
MQRLLQAAMDQKKRGV--------------------------------------------
LKKLQKMALRTNRLNIFNQERVVIVIRSLNSSCCNFSTESQICTLRIDITDGSHRFRDET
------------------------------------------------------------
LKKLQKAAEKQR------------------------------------------------
LKKLQKAAEKQR------------------------------------------------
LKKLQKAAEKQR------------------------------------------------
8: 305-305
LOC_Os03g04400.1 2 0 U2 GTAATTTT..GCAG
GRMZM2G176499_T01 2 0 U2 GTAAATAG..GCAG
estExt_Genewise1Plus.C_chr_111861 2 0 U2 GTAATTAG..GCAG
GSVIVP00038614001 1 0 U2 GTTTGAAT..GAAG
Glyma20g24050.1 1 0 U2 GTTTGTCG..GCAG
Glyma20g24050.2 1 0 U2 GTTTGTCG..GCAG
Glyma10g42950.1 1 0 U2 GTTTGTCG..GCAG
Os~LOC_Os03g04400.1
Zm~GRMZM2G176499_T01
Sb~estExt_Genewise1Plus.C_chr_111861
Pp~gw1.8.103.1
Pt~eugene3.00090311
At~AT5G23590.1
Vv~GSVIVP00038614001
Lj~chr5.LjT39E05.240.nd
Gm~Glyma20g24050.1
Gm~Glyma20g24050.2
Gm~Glyma10g42950.1
----
----
----
----
----
----
FQAI
----
----
----
----


3' UTR introns