SRGD	Gene ID 745	BLASTp at NCBI	n/a	n/a		Organisms Os ,Mt ,Vv ,Gm ,Zm ,Pp ,Lj ,Sb ,Pt ,At Gene count 11 Cintron count 21 Cintron classes U2 ,em ,im ,absent
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	MGKKQHSKDRMFITSTEWKTEWGGAKSRDLKTPFKRLPYYCCALTFTPFEDAVCTKEGHV MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKSLPYYCCALTFLPFEDPVCTIDGSV -------------------MRWG------------------------------------- MGKKQHSKDRMFITRTEWATEWGGAKQKDVGTPFKRLPFYCCSLTFLPFEDPVCTVDGSV MGKKQHSKDRMFITRTEWATEWGGAKQKDVGTPFKRLPFYCCSLTFLPFEDPVCTVDGSV MGKKQHSKDRMYITKTEWATEWGGAKSKQLQTPFKRLPFYCCALTFTPFEFPVCTADGSV ------------------------------------------------------------ ------------------------------------MAFLCY------------------ MGKKQHSKDRMFITKTEWATEWGGFKSKDNRTVFKRLPFYCCALTFTPFEYPVCTPDGSV MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFEEPVCTPDGSV MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFEEPVCTPDGSV	2: 36-36 CT027662_30.2 0 0 U2 .. 3: 41-41 AT5G67530.1 0 2 U2 GTATGTTT..TCAG estExt_Genewise1Plus.C_chr_110954 0 2 U2 GTAACTAC..GTAG gw1.V.4444.1 0 2 U2 GTACGCTC..GCAG Glyma01g40170.1 0 2 U2 GTACGATA..ATAG Glyma11g05130.1 0 2 U2 GTACGATA..TTAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	FDILNIIPYVTKFKRNPVTGKPLAIKDLVKIQFHKNADGEYQCPVLHKVFTEFTHIVAIK FEITTIVPYIRKFGKHPVTGAPLKGEDLIPLIFHKNSEGEYHCPVLNKVFTEFTHIVAVK ------------------------------------------------------------ FDLMSIIPYLKKFGKHPVTGAPLKHEDLIPLTFHKNSDGEFQCPVLNKVFTEFTHIVAVK FDLMSIVPYLKKFGKHPVTGAPLKHEDLIPLTFHKNSDGEFQCPVLNKVFTEFTHIVAVK FDLMHITPYIRKYGKHPVTGAPLKQGDLIPLNFHKNSEGEYHCPVLNKVFTEFTHIVSVK ------------------------------------------------------------ ------------------------------------SAGEYHCPVLNKVFTEFTHIVAVK FDVMNITPYVIKYGKHPVTGTPLKQQDLIPLNFHKNSEGEFQCPVLNKVFTEFTHIVAVK FDNMNITPYIVKYGKHPVNGAPLKHQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVK FDNMNITPYIVKYGKHPVTGAPLKHQDLISLTFHKNSEGEYHCPVLNKVFTEFTHIVAVK	4: 62-62 estExt_fgenesh1_pm.C_330010 0 2 U2 GTAAGTCC..GCAG AT5G67530.1 1 2 U2 GTGAGTAG..GCAG estExt_Genewise1Plus.C_chr_110954 1 2 U2 GTGAGTGG..GTAG gw1.V.4444.1 1 2 U2 GTTAGTAT..CAAG chr2.CM0168.280.nc 0 2 U2 GTCAGTAT..TCAG Glyma01g40170.1 1 2 U2 GTGAGTTT..TCAG Glyma11g05130.1 1 2 U2 GTGAGTTT..TCAG 5: 97-97 AT5G67530.1 2 1 U2 GTTCTCTT..GTAG estExt_Genewise1Plus.C_chr_110954 2 1 U2 GTGAGTTA..GCAG gw1.V.4444.1 2 1 U2 GTGCGGAT..ATAG chr2.CM0168.280.nc 1 1 U2 GTACTTCT..GCAG Glyma01g40170.1 2 1 U2 GTTATCAT..GCAG Glyma11g05130.1 2 1 U2 GTTATCAC..GCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	TTGNVFSYEAIRELNIKSKNWKELLTDEPFTRDDIITIQDPNNLDAKVLSEFDHVKKEVD TTGNVFCYEAIKELNIKTKNWKELLTEEPFTRADLITIQNPNAVDGKVTVEFDHVKNGLK --------LAIQELNIKPKNWRELLTDEPFTRNDLITIQNPNAVDSKILGEFDHVKKGLK TTGNVFCYEAIQELNIKPKNWKELLTDEPFTRNDLITIQNPNVVDGKVLGEFDHVKKGLK TTGNVFCYEAIQELNIKPKNWKELLTDEPFTRNDLITIQNPNVVDGKVLGEFDHVKKGLK TTGNVFCYEAIKELNIKTKNWKELLTDELFTKDDLITIQ--------------------- ------------------------------------------------------------ TTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLVTIQNPNALDQKVLLDFDHVKQNLK TTGNVFCYEAVKELNIKTKNWKELLTDEPFTRDDLITIQNPNALDSKVLLDFDHVKHNLK TTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLK TTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLK	6: 128-128 AT5G67530.1 3 0 U2 GTTTGTTT..TTAG LOC_Os03g10400.2 3 0 U2 GTGAGCTT..GCAG estExt_Genewise1Plus.C_chr_110954 3 0 U2 GTAACTTC..ATAG gw1.V.4444.1 3 0 U2 GTAGCTTT..ATAG chr2.CM0168.280.nc 2 0 U2 GTTTGTTT..ATAG Glyma01g40170.1 3 0 U2 GTTCGTTT..TTAG Glyma11g05130.1 3 0 U2 GTTTGTTT..TTAG 7: 158-158 estExt_fgenesh1_pm.C_330010 1 0 U2 GTAGACAT..CCAG AT5G67530.1 4 0 U2 GTAACTAA..GCAG LOC_Os03g10400.2 4 0 U2 GTATGTAT..GAAG estExt_Genewise1Plus.C_chr_110954 4 0 U2 GTGACTAC..GTAG gw1.V.4444.1 4 0 U2 GTGACTGA..AAAG chr2.CM0168.280.nc 3 0 U2 GTGAGTTG..ACAG Glyma01g40170.1 4 0 U2 GTAAGTTG..GCAG Glyma11g05130.1 4 0 U2 GTAAGTTG..GCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	LDSDELKQLREDPAYGINMSGDTKRILQELGTEKGRDIASSGGGGDKTQREHAAAVAALK IDDEELKKMNSDPAYNINVSGDIKHMLADLGTDKAKEIALHGGGGNKARNERAAAIAAIL LEDEELQRMKNDPTYNINISGDLKQMIKELGTEKGKLAFLHGGGGQKAQKERAAALAAIL LEDEELQRMKDDPTYNINISGDLKQMIKELGTEKGNEAFLQGGGGLKAQKERAAALAAIL LEDEELQRMKDDPTYNINISGDLKQMIKDLGTEKGKEAFLQGGGGLKAQKERAAALAAIL -------KMSSDPSYNINISGDIKQMLAELGTEKGRQIALHGGGGSKAQNERAAALVAIL ------------------------------------------------------------ IDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAIL IDDEELQKMSSDPTYNINMSGDLKQMFQEIGTEKGKETAMHGGGGGKARKLRADALAAVI VDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETALHGGGGGKAQKERAAALAAIL VDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETALHGGGGGKAQKERAAALAAIL	8: 183-183 AT5G67530.1 5 1 U2 GTTTGATT..GCAG LOC_Os03g10400.2 5 1 U2 GTTGATTC..TCAG estExt_Genewise1Plus.C_chr_110954 5 1 U2 GTTTAATT..GCAG chr2.CM0168.280.nc 4 1 U2 GTATGCTA..TCAG Glyma01g40170.1 5 1 U2 GTATGCTA..TCAG Glyma11g05130.1 5 1 U2 GTATGCTA..TCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	AAK---KENPEEEEKKLPPKPAPLSIVDIASAAINGRSAAATLAGSAEKTAAHVAAHTAG ESRSKIKEVSKAE-----QPKQTYSVVDAASASVFGRSADAAKAGSSDKTAARIAMHMAG AK----KEKDDSKSGKEPKPHQPFSIVDAASASVHGRSAAAAKAATAEKTAARIAMHMAG AR----KEKDDSKAGKEPKPNQSFSIVDAASASVHGRSAAAAKATSAEKTAARIAMHMAG AR----KEKDDSKPGKEPKPNQSFSIVDAASASVHGRSAAAAKATSAEKTAARIAMHMAG AARSRIKEDPQSTSN---KLPRAYSI---------------------------------- ------------------------------------------------------------ AARSQVKEDSKSADG----APQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAG AARSRLKEDSKSNPNEEAKAPQAFSIVDAASASVHGRSADAAKASSSDKTAARIAMHKAG AARSRVEEDSKSNPNKEAKAPQAFSVVDAASASVHGRSAAAAKASAGDKTAARIAMHVAG AARSRVEEDSKSNPNKEVKVSQAFSIVDAASASVHGRSAAAAKASADDKTAARIAMHMAG	9: 246-246 estExt_fgenesh1_pm.C_330010 2 0 U2 GTAGGAAA..ACAG 10: 265-265 gw1.V.4444.1 5 0 U2 GTAGATGC..AAAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	SLAPVSSRLVKSKYTSGAASRSFTSTSYDPVTKNEFEYVQAERNPKKKGYVRMHTSLGDL DRTPVNSKMVKSRYSSGAASRSFTSSAFTPVTKNDFELIKVEKNPKKKGYVQFQTTHGDL DRAPVNAKLVKSRYTTGAASRSFTSTAYDPVTKNELEYVKVEKNPKKKGYVQLHTTHGDL ERAPVNAKLVKSRYTTGAASRSFTSTSYDPVTKNEYEYVKVERNPKKKGYVQLHTTHGDL ERAPVNAKLVKSRYTTGAASRSFTSTSYDPVTKNEYEYVKVERNPKKKGYVQLHTTHGDL -----------SRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLQTTHGDL -----------SRFTTGAASRSFTSTSYDPVTKNEFEYIKVEKNPTKKGYVQLHTTHGDL DRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDL DRAPVNAKLVKSRYTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGEL DRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDL DRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDL	11: 308-308 estExt_fgenesh1_pm.C_330010 3 0 U2 GTAATTAG..TCAG AT5G67530.1 6 0 U2 GTTAGCTT..GCAG LOC_Os03g10400.2 6 0 U2 GTACACTT..TCAG estExt_Genewise1Plus.C_chr_110954 6 0 U2 GTATACAG..TCAG chr2.CM0168.280.nc 5 0 U2 GTGAGTTT..TCAG Glyma01g40170.1 6 0 U2 GTGAGTTT..TCAG Glyma11g05130.1 6 0 U2 GTGAGTTT..TCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	NIELHCDITPRACENFITLCERGYYDNVIFHRSIKNFMIQGGDPTGTGRGGESIWGKPFK NIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFK NLELHCDITPRTCENFLTHCENGYYNGLIFHRSIKNFMIQGGDPTGTGSGGESIWGKPFK NLELHCDITPRTCENFLTHCENGYYNGLIFHRSIKNFMIQGGDPTGTGSGGESIWGKPFK NLELHCDITPRTCENFLTHCENGYYDGLIFHRSIKNFMIQGGDPTGTGSGGESIWGKPFK NIELHCDITPRTCENFITHCERGYYTGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFN NIELHCDITPRACENFITLCERGYYNGIAFHRNIRNFMIQGGDPTGTGSGGESIWGKPFK NIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK NIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFK NIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFK NIELHCDIAPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFK	12: 393-393 AT5G67530.1 7 2 U2 GTATGCAT..AAAG LOC_Os03g10400.2 7 2 U2 GTATGTTC..ACAG estExt_Genewise1Plus.C_chr_110954 7 2 U2 GTATGTTC..ACAG gw1.V.4444.1 6 2 U2 GTATGTTA..GTAG chr2.CM0168.280.nc 6 2 U2 GTAAGATG..GTAG Glyma01g40170.1 7 2 U2 GTATAATG..GCAG Glyma11g05130.1 7 2 U2 GTATAATG..GCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	DELNSKVTHSERGILSMANSGPHSNGSQFFFLYKSAVHLNYKHTVFGRIVGGLDVLSAME DEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAME DELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAME DEPNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNYKHTVFGMVVGGLTTLSTME DEPNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAME DEPNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGMTTLAAME DELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLMTLSAME DELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATME DELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGGVVGGLTTLAAME DELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAME DELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLSVME
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	KVPVDDDDRPLEEIKILRVSVFVNPYAELEEEEKKAAAEAAAKSTDVDDDAEKLGSWYSN NVPVDESDRPLEEIKIIEASVFVNPYTELDEEEEKEKAEKEKNE---DKDIEKIGSWYSN KVPVDDDDRPLEEIKILKVSVFVNPYTEPDEEEEEKAKEEEKKK---DEDYDKVGSWYSN RVPVDDDDRPMEEIKILKVSIFVNPYTEPDEEEEKAK--EEKKK---DEDYDKVGSWYSN KVPVDDDDRPLEEIKILKVSIFVNPYTEPDEEEEKAKEEEEKKK---DEDYDKVGSWYSN KVPVDDNDRPLEEIKITSVTVFVNPYTELDEEEQEKAKDEKDIG---DEENV-------- KVPVDDNDRPLVSITI-------------------------------------------- KVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNAN---DEENDKVGSWYSN KVPVDDDDRPLDEIKITNVTIFVNPYTEPDEEDEKDNAKEKNAE---DEDNDKIGSWYSN KVPVDDDDRPLEEIKITSVTIFVNPYTEPDEGEEQDNAKEKNAE---DEDNDKVGSWYSN KVPVDDDDRPLEEIKILSVTIFVNPYTEPDEGEEQDNAKEKNAE---DEDNGKVGSWYSN	13: 490-490 AT5G67530.1 8 0 U2 GTAAGTTC..GCAG LOC_Os03g10400.2 8 0 U2 GTTAGTGT..ACAG estExt_Genewise1Plus.C_chr_110954 8 0 U2 GTTAGTAT..ACAG gw1.V.4444.1 7 0 U2 GTGAGTTA..GCAG chr2.CM0168.280.nc 7 0 U2 GTGAGTGA..GCAG Glyma01g40170.1 8 0 U2 GTGATTCA..GCAG Glyma11g05130.1 8 0 U2 GTGAGTCA..GCAG 14: 530-530 AT5G67530.1 9 0 U2 GTTAGTAT..TCAG LOC_Os03g10400.2 9 0 U2 GTATGTTG..TCAG estExt_Genewise1Plus.C_chr_110954 9 0 U2 GTAATTTT..TCAG chr2.CM0168.280.nc 8 0 U2 GTTTGTTC..TCAG Glyma01g40170.1 9 0 U2 GTATGATC..TCAG Glyma11g05130.1 9 0 U2 GTATGTTC..TCAG
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	PSAGV---APQAHGTGVGKYLKN----IATRKEADPVAVDDGANVPSKRTKIENGSGVQF PGSGTTEAG--AGGGGVGKYLKAMSS-TATKDTKGSLDSDISTIGVSKKRKTTASASTGF PGTGV--AGSTSSGGGVGKYLKARTAGFADV-----VADDS------NKKRKASVSNVEF PGTGV--AGSTSTGGGVGKYLKARAAGSIDVTGSAGVADDS------SKKRKATASSVEF PGTGV--AGSTSTGGGVGKYLKARTAGSVDVTGSAGAADDS------SKKRKATASSVEF ------------------------------------------------------------ ------------------GFLHFRIISILKLKLLGILISSN------------------- PGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVD-TGTAV------VGKKRKAVVSGEF PGAGISESGSKGVGGGVGKYLKARSA-QAESANVD-TGTAVGKKGTAVGKKRKAVVSSEF PGAATSVSGGTGAGGGVGKYLKARST-QAKSATVDNTGTDV-----VVKKRKVGVASSEF PGAATSESGGTGVGGGVGKYLKARNA-QAKSATVDNTGTDV-----VVKKRKVGVASSEF
Pp~estExt_fgenesh1_pm.C_330010 At~AT5G67530.1 Os~LOC_Os03g10400.2 Zm~GRMZM2G007486_T02 Sb~estExt_Genewise1Plus.C_chr_110954 Pt~gw1.V.4444.1 Vv~GSVIVP00012759001 Mt~CT027662_30.2 Lj~chr2.CM0168.280.nc Gm~Glyma01g40170.1 Gm~Glyma11g05130.1	KDFSSW KDFSSW KDFSGW KDFSGW KDFSGW ------ ------ KDFSGW NDFSAW KDFSAW KDFSAW
		3' UTR introns