SRGD Gene ID 650 BLASTp at NCBI n/a n/a  
OrganismsAt ,Mt ,Os ,Gm ,Zm ,Pp ,Sb ,Pt
Gene count12
Cintron count21
Cintron classesU2 ,im ,em ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
-MATLEAAKTAEDLRREIDELHRQQREINERLRDPKGLRRNALGG----KARNIDADGSH
-MATLEAGKTAEDLRREIDELQRQQREINERLRDPRGLRKNGPQG---GTARNIDANGPH
--MAAATEKTAEEIRRELQELQRQHREISERLRDPRGLRRGAPA--------AAGPGGPR
--MAAATEKTAEDIRRELQELQRQHREITERLRDPRGLRRGAPGP-------GPGPGAPR
--MAAATEKTAEDIRRELQELQRQHREITERLRDPRGLRRGAPGP-------GPGPGGAR
-MGDTALEKTAEELRHEIDELHRQQREITERLRDPRGLRRGGFS--------NVAPRNQG
MGSTAAAEKTEQELRNEIDELLRQQREITERLRDPRGLRKGALST-----P-LLRNNSIR
MGSTAAAEKTEQELRNEIDELLRQQREITERLRDPRGLRKGALST-----P-LLRNNSIR
----MAVEKTEQELRNEIDELLRQQREISERLRDPRGLRRGALPG-----PPALRTNGVR
-MGSTAVEKTEEELRNEIDELLRQQREITERLRDPRGLRRGSLAG-----P-ALPSNGAR
----SAVEKTENELQREIDELHRQQRQISERLRDPRGLRRGGFSSAAAAAPRNFASNGAR
---SSAVEETEEELQREIDELYRQQRHITERLRDPRGLRRGGLSSAAAAAPRNFVANGAR
2: 1-1
AT1G15200.1 0 0 U2 ..
3: 26-26
e_gw1.313.11.1 0 0 U2 GTTTACTC..ACAG
estExt_gwp_gw1.C_360097 0 0 U2 GTTCTGCC..ACAG
LOC_Os03g49520.1 0 0 U2 GTCGGTTT..GCAG
GRMZM2G002558_T02 0 0 U2 GTACATCT..ACAG
estExt_fgenesh1_pg.C_chr_11136 0 0 U2 GTACATCT..GCAG
AC157375_13.2 0 0 U2 GTTAATAT..TCAG
Glyma08g19640.1 0 0 U2 GTCCTCTC..GTAG
Glyma15g05410.1 0 0 U2 GTCCTCTC..GTAG
gw1.I.9946.1 0 0 U2 GTCATCTC..GTAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
QR----KNAPRG--GDGFDGYEQRPGKRRLLSAVVKVVQEEKLPETDNEIEENKKTQPDK
LRNNASRGVIRR--VEGFGGEDQRPRKRRLLSAVVKVTEEVESTENEKEKEGNEEVHPDK
PL----RGFPRP--AV--DLVDQSAPKRRILSAVVK-VEDTEAKEDVKKEA---------
PL----RGFARP--AVGPESGDQPPQKRRLLSAVVK-VDGAENNEEGTKDA---------
PL----RGFVRP--PVGAESGDQPPQKRRLLSAVVK-VDGAENNNNEEGTK-------DV
R-----RGFPRP--AERNDVEDEPPAKRRLSSAVVK-VDGEDVSKDGEFPV----DGNGT
Q-----RPFVRH-GGDNHDSEDQPPAKRRLSSAVVK-VGDGELTEDADAGN----TKDST
Q-----RPFVRH-GGDNHDSEDQPPAKRRLSSAVVK-VGDGELTEDADAGN----TKDST
Q-----RPFIRP--GDRNDSEDQPPSKRRLSSAVVK-VDDGDLPEDADAGQEDGKTKDLT
Q-----RPFIRPVTGDRNDSEDQPPAKRRLSSAVVK-VDDGELPEDAGAGQ-DGKTKDSA
H-----RGFVRP--ADRNEAEDQPPAKRRLLSAVVK---DPARAEDVKKQQ-------LA
P-----RGFVRP--ADRNNAEDQPPAKRRLLSSVVKSVEDSATEEDAKNEQ-------MG
4: 71-73
e_gw1.313.11.1 1 0 U2 GTCATCAG..ACAG
estExt_gwp_gw1.C_360097 1 0 U2 GTAAGGAG..TCAG
LOC_Os03g49520.1 1 0 U2 GTACGGCG..CAAG
GRMZM2G002558_T02 1 0 U2 GTACGCTT..GTAG
estExt_fgenesh1_pg.C_chr_11136 1 0 U2 GTACGCTT..GTAG
AC157375_13.2 1 0 U2 GTGAGTTT..TTAG
Glyma08g19640.1 1 0 U2 GTTAGTTT..TCAG
Glyma15g05410.1 1 0 U2 GTTAGTAT..TCAG
gw1.I.9946.1 1 0 U2 GTATTCTT..TTAG
5: 95-95
e_gw1.313.11.1 2 0 U2 GTATGTTG..ACAG
estExt_gwp_gw1.C_360097 2 0 U2 GTTTGTCA..ACAG
LOC_Os03g49520.1 2 0 U2 GTATCCGC..GGAG
GRMZM2G002558_T02 2 0 U2 GTATCTTC..GGAG
estExt_fgenesh1_pg.C_chr_11136 2 0 U2 GTATCTTC..GGAG
AC157375_13.2 2 0 U2 GTATTTTC..GAAG
Glyma08g19640.1 2 0 U2 GTTATAAT..GAAG
Glyma15g05410.1 2 0 U2 GTATCTTA..GAAG
gw1.I.9946.1 2 0 U2 GTAGACCC..TGAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
DDADEETDLADRRPTLQRNYNADHSNPLPAND----------DAQP--AEPAPRVLSKTS
DDADEENDVADRRPTLQRNYNADDSNSLPSTD-SQRRGRSDSNTRTPTGEPVPRVLPKTS
EAEGPEGGSAAAEGGERR------DGGF-RRD-GSQRMPRREFDMS-LPEPLPREFPKDE
DAEGHGTGSGATEGSAGRGF---NNGGF-RRD-GGLRMQRRVDYNS-LPEPAPRELPRNE
DVEGHEPSSGVTEGSDRRGF---NNGGF-RRD-GNLRMQRRVDYNS-LPEPAPRELPRNE
QVKVGENGTSDQSDKKQSGL---HRGSWSQRDAEQRRTNKRYEAFA-LPEPAPRVLPKNE
GDGVNGNATVGQSDGKPFNS---HQSGLSRRD-SYQRNSKASDIPT--TEHVPRVLPKNE
GDGVNGNATVGQSDGKPFNS---HQSGLSRRD-SYQRNSKASDIPT--TEHVPRVLPKNE
NEAVNGTAALVQNDSNPFNS---HQSGWSKRDISNQKTSKASDVPN--TDHVPRVLPKNE
NEAVNGTAAVVQNDSNPFNS---HQTVWSKRD-NNQRTSKASDIPT--TEHVPRVLPKNE
EEGNVDPAKGTLADGKPAML---RQSGWSRRD-VNQRAVKRVNVES-LIEPVPRVLPKNQ
EDGNVGPATGIRGDGKPFKL---QQSGWSRRD-FDLRAVKRVNFNSCLVSDLPRALPKNQ
6: 149-149
e_gw1.313.11.1 3 0 U2 GTAGATTC..GCAG
7: 159-161
LOC_Os03g49520.1 3 0 U2 GTGAGTAG..GCAG
GRMZM2G002558_T02 3 0 U2 GTGAGTAC..ATAG
estExt_fgenesh1_pg.C_chr_11136 3 0 U2 GTGAGTAC..ATAG
AC157375_13.2 3 0 U2 GTAGTAAA..TCAG
Glyma08g19640.1 3 0 U2 GTACTAAA..TCAG
Glyma15g05410.1 3 0 U2 GTGCTAAA..TCAG
8: 165-166
estExt_gwp_gw1.C_360097 3 1 U2 GTGCAGGC..CAAG
gw1.I.9946.1 3 1 U2 GTCTTGTT..CCAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
DPNVAKRNRRMFGALL-GTLEKFRREDEKLSGSESFQRRSEQLKKAEHKAQEENERLRQQ
DPNVAKRNRRMFGALL-GTLEKFRQEDKKLSGSESFQRRSEQLRKAEQKAQEESERLRQQ
DQSLVKRNKRMLGKLLVGTLEKFQQEDKKLSNTEAYMRRSEVQRKADQKAREESERLRQQ
DPNLVRRNKRMLGQLLVGTLEKFQQEDKKLSNSEAFLRRSETQRKAEQKVREESERLRQK
DPNLVRRNKRMLGQLLVGTLEKFQQEDKKLSNSEAFLRRSETQRKAEQKVREESERLRQQ
DPKLVNRNRRMLGNLL-GTLEKFRKEDKQRSGTDAYARRTAALQRAEEKAREESERLRLQ
DPSLVNRNKRMLGQLL-GTLEKFRKEDKQLSGTEAFMRRSNSLQRAEQRAREESERLRKE
DPSLVNRNKRMLGQLL-GTLEKFRKEDKQLSGTEAFMRRSNSLQRAEQRAREESERLRKE
DPSLVNRNKRMLGQLL-GTLEKFRKEDMQLSGTEAYMRRSNSLQRAEQRAREESERLRKE
DPSLVNRNKRMLGQLL-GTLEKFRKEDKQLSGTEAYMRRSSSLQRAEQRAREESERLRKE
DPSLVSRNKRMLGQLL-GTLEKFRKEDMKLSGTEAFIQRSNALQRAEQKAREESERLRQQ
DPRLVSRNKRMLGQLL-GTLEKFRKEDMKISGMEAFIQRSNALQRAEQKAHEERERLRQQ
9: 200-200
e_gw1.313.11.1 4 0 U2 GTAATTAG..ACAG
estExt_gwp_gw1.C_360097 4 0 U2 GTATTACT..ACAG
LOC_Os03g49520.1 4 0 U2 GTAACCGA..CCAG
GRMZM2G002558_T02 4 0 U2 GTAAAGCA..GCAG
estExt_fgenesh1_pg.C_chr_11136 4 0 U2 GTAAAGCA..GCAG
AC157375_13.2 4 0 U2 GTATGTAT..CCAG
Glyma08g19640.1 4 0 U2 GTATATGA..CCAG
Glyma15g05410.1 4 0 U2 GTATATCT..CCAG
gw1.I.9946.1 4 0 U2 GTATGTGT..TCAG
10: 224-224
e_gw1.313.11.1 5 0 U2 GTGATTAT..GCAG
estExt_gwp_gw1.C_360097 5 0 U2 GTAAGTTA..GCAG
LOC_Os03g49520.1 5 0 U2 GTACTAAC..GTAG
GRMZM2G002558_T02 5 0 U2 GTTTGCTT..TTAG
estExt_fgenesh1_pg.C_chr_11136 5 0 U2 GTTTGCTC..TTAG
AC157375_13.2 5 0 U2 GTAAGTTT..CTAG
Glyma08g19640.1 5 0 U2 GTAAGTTC..CTAG
Glyma15g05410.1 5 0 U2 GTAAGTTC..CTAG
gw1.I.9946.1 5 0 U2 GTGAGTAT..TCAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
EKEALAEKRRADLVQS---------------YLGRC-----------RTKAGPRIYYLPV
EKEALAEKRRADLTLRAKLAAEAEVKQLELLFLQWAEHHTRLASFISRTKAGPGIYYLPV
EREQAIEKRKRDMMLRARVAAKAEEKRLELLYMQWAEHHKKLSNFL-RTTAEPPIYYMPA
EREQIAEKRKRDMTLRARVAAKAEEKRLELLYIQWTEHHKRLSNFL-RTKAEPPIYYMPT
EREQIAEKRKRDMTLRARVAAKAEEKRLELLYIQWTEHHKRLSNFL-RTKTEPPIYYMPT
ERENLTEKRRRDLTLRARVAAKAEQKKLELLFLQWSEHQKKLSNFI-RTKAEPRIYYAPV
EREQIAEKRRRDLTLRARVAAKTEEKQLELLFLRWSEHHKRLSNFI-RTKAEPPIYYLPN
EREQIAEKRRRDLTLRARVAAKTEEKQLELLFLRWSEHHKRLSNFI-RTKAEPPIYYLPN
EREQIAEKRRRDLTLRARVAAKTEEKKLELLFLQWSEHRKRLSNFI-RTKAEPPIYYLPN
EREQIAEKRRRDLTLRARVAAKTEEKKLELLFLQWTEHHKRLSNFI-RTKAEPPIYYLPN
EREQIAEQRKKDLTLRARIAAKAEEKKLELLFIRWSEHHKKLSNFI-RTKAEPPIYYLFK
ECEQIAEQRRRDLTLRARITVKAEEKKLELLFLRWNDHHKKLSNFI-RTKAEPPIYYLPK
11: 252-252
estExt_gwp_gw1.C_360097 6 0 U2 GTATAGTC..GTAG
LOC_Os03g49520.1 6 0 U2 GTAAGCTC..ATAG
GRMZM2G002558_T02 6 0 U2 GTAAGTTT..TTAG
estExt_fgenesh1_pg.C_chr_11136 6 0 U2 GTAAGTTC..TTAG
AC157375_13.2 6 0 U2 GTAGGATC..TCAG
Glyma08g19640.1 6 0 U2 GTTTGTTT..TCAG
Glyma15g05410.1 6 0 U2 GTTTGTTT..TCAG
gw1.I.9946.1 6 0 U2 GTTTGTTC..TCAG
12: 274-274
e_gw1.313.11.1 6 0 U2 GTTAAATA..TGAG
13: 285-285
estExt_gwp_gw1.C_360097 7 2 U2 GTGAGGCT..AGAG
LOC_Os03g49520.1 7 2 U2 GTCGCTTT..TCAG
GRMZM2G002558_T02 7 2 U2 GTAGCTTT..GCAG
estExt_fgenesh1_pg.C_chr_11136 7 2 U2 GTAACTTT..GCAG
AC157375_13.2 7 2 U2 GTTTGTTC..GCAG
Glyma08g19640.1 7 2 U2 GTTTGCCC..GCAG
Glyma15g05410.1 7 2 U2 GTTTGCCC..GCAG
gw1.I.9946.1 7 2 U2 GTACACAC..TCAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
KSSEETDKLLQEAQQD--LEEWKARSREELSECQKRISELSMENLDADFERWKDGPPGRT
KSCEKTDNLLQEAQQE--LAEWKTRSREELSECQRQISELNMANLDVEIERWKNGPPGRS
KPIIDDPAIAEENKEK-AFQEWKSERRAELTQFQKQVEEQYMSNVERQLERMQNARNARR
KPIIDDPAIVEQNKEK-VFEEWKSMRRDELTRFQKQVEEQYLSNVERQLERIQNARNARK
KPIIDDPAIVEQNKEV-AFEEWKSMRRAELTQFQKQVEEQYLSNVERQLEKIQNARNARK
KPLEEDTSEVEQQKER-TFLEWKAARRQEVSEYQKEIEEQCLGNVEKELERWQNARKARK
KPLDEEDVSTNKSKEE-DFLEWKNARREELSEYQKQIGDQYLANVEKDLERWQNARNARK
KPLDEEDVSTNKSKEE-DFLEWKNARREELSEYQKQIGDQYLANVEKDLERWQNARNARK
KPLDEDPTLLEKRKEE-AFLEWKNARREEVSEYQKQIGEQYLANVEKELERWQNARNARK
KPLDEDPTLLEKSKEE-AFLEWKNARREEVSEYQKQIGEQYLANVEKELERWQNARNARK
KPLEKDATLLDQQREQ-AFLEWKAARREELSEYQKQIGDQHLGYVEKELERWQNARKARR
QPLEKDATLLDQQREQVTFLEWKAGRRDELSEYQKQIGDQQLSYVEKELERWQN---XRR
14: 314-315
e_gw1.313.11.1 7 0 U2 GTATTGTA..ACAG
estExt_gwp_gw1.C_360097 8 0 U2 GTATTATG..TCAG
LOC_Os03g49520.1 8 0 U2 GTATTTTC..GCAG
GRMZM2G002558_T02 8 0 U2 GTATATCC..ACAG
estExt_fgenesh1_pg.C_chr_11136 8 0 U2 GTACATCC..ACAG
AC157375_13.2 8 0 U2 GTAGTCAA..GCAG
Glyma08g19640.1 8 0 U2 GTTGTCAA..TCAG
Glyma15g05410.1 8 0 U2 GTTGTCAA..GCAG
gw1.I.9946.1 8 0 U2 GTGAGTTG..TCAG
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
EVSN-----NKLAAEANTG-VESG-DNIPEQPGEGDEIVEDKHDDTGAILVDEHERVKIE
KVSS-----DILTAEANT--VGDGDDKVLEQAGEGIDVVEDEDDETGAMVIEDEERVISE
GNGP-SNMQE-MDKELDTHRAEHG-PKTRRVLEGG----NDDEDDMDDMAV-EDEL-MDE
ANGH-ANMQE-MDKELDTHRAEHG-PKTRRVPEEG---GNDDDEDAEDMAA-EDEV-MDE
ANGP-ANMQE-MDKELDTHRAEHG-PKTRRVPEEG---GNDDDEDAEDMAA-EDEL-MDE
ANNEGMNLQETMDKELETHRMEHG-PKKRKIPGGGVG-DEDEEDEVEDINGGEDEMIMDD
GNND-QNLQETMDKELDTHRLEHG-PKKRKIPDGTN--NEDDDDDVEDINVGEDDM-MDD
GNND-QNLQETMDKELDTHRLEHG-PKKRKIPDGTN--NEDDDDDVEDINVGEDDM-MDD
VNND-QNLQETMDKELDTHRLEHG-PKKRKIPDGN---NNEDDDDVEDINVGEDDM-MDD
VNND-QNLQETMDKELDTHRLEHG-PKKRKIPDEN---NNDDDDDVEDINVGEDDM-MDD
ANND-ANLQETMDKELDTHRLEHG-PKTRKIPGGS---NNEDEDDVEDINVGEDDL-MDD
ASDD-VNLQETMDKELDTRRLEHG-PKTRKIPGGS---NNKEDDDVEDINVGEDDV-MDD
Pp~e_gw1.313.11.1
Pp~estExt_gwp_gw1.C_360097
Os~LOC_Os03g49520.1
Zm~GRMZM2G002558_T02
Sb~estExt_fgenesh1_pg.C_chr_11136
At~AT1G15200.1
Mt~AC157375_13.2
Mt~AC189276_1.1
Gm~Glyma08g19640.1
Gm~Glyma15g05410.1
Pt~gw1.I.9946.1
Pt~gw1.III.2287.1
DAGTNKLVNV-------------------------
EAETNKLISV-------------------------
VLGINEPISDEQTKPSEEAADGVPVSEEVQ-----
VLGINDGINEDPSKPSEEATTEGGEPAPEEAQ---
VLGINDGINEDPSKPSEEATTEGGGPAPEEAQ---
LLEEGGDGTIKEEVATDTVKAEAVEEDIKHEVL--
ELDDDSGRRIDETIKTETSNATADPAAATDNEDLK
ELDDDSGRRIDETIKTETSNATADPAAATDNEDLK
ELDDDSGRRIDDTTKTEAGNASTDPVADGENAEGK
ELDDDSSRRIDETTKTEAGSASSDPAADADNAGGK
VL---------------------------------
VLEVDD-----------------------------