SRGD	Gene ID 649	BLASTp at NCBI	n/a	n/a		Organisms Gm ,Mt ,Pp ,Lj ,Vv ,Sb ,Pt ,Os ,At ,Zm Gene count 12 Cintron count 16 Cintron classes U2 ,im ,absent ,em ,GC
Home (Search)						Bookmark for this page        Download data

		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIQCATCGTYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIQCGTCGTYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK MGERKVLNKYYPPDFDPAKIPRRKQPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPAKLPRVRRPENLQINVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPSKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK MGERKVLNKYYPPDFDPAKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK	2: 0-0 AC157535_30.2 0 0 U2 ..
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	EDVIGETYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWRDQDEAADK EDVVGETYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWRAQDEAADK EDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWREEDEVADR EDVEGETYLGIQIFRFYFKCSKCSAELTMKTDPQNSDYIMETGASRNYEPWRATDEATDE EDVIGETYLGIQIFRFYFKCTRCSAELTMKTDPQNSDYVVESGATRNFEPWRAEDEETDE EDVIGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYTVESGATRNFEPWRAEDEELDT EDVIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDK EDVIGETYLGIQIFRFYFKCTRCSAELTMKTDPQNSDYVVESGATRNFEPWRAEDEEAES EDVIGETYLGIQIFRFYFKCTKCSAEVTMKTDPQNSDYIVESGATRNFEPWRAEDEETDK EDVIGETYLGIQIFRFYFKCTKCSAEVTMKTDPQNSDYIVESGATRNFEPWRAEDEEADK EDVIGETYLGIQIFRFYFKCTKCSAEVTMKTDPQNSDYIVESGATRNFEPWRAEDEEADK EDCIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGATRNFEPWRAEDEVADK	3: 65-65 estExt_Genewise1Plus.C_chr_37003 0 0 U2 GTAGGCCT..GCAG LOC_Os01g40610.1 0 0 U2 GTAGGTTG..GCAG e_gw1.294.23.1 0 0 U2 GTGAGGAA..GCAG estExt_Genewise1_v1.C_LG_XI3018 0 0 U2 GTATTTTT..GCAG AT1G17130.1 0 0 U2 GTAATTGA..GCAG Glyma13g33280.1 1 0 U2 GTTTGATT..GCAG Glyma15g39810.1 1 0 U2 GTTTGATT..GCAG Glyma15g39810.2 1 0 U2 GTTTGATT..GCAG 4: 115-115 estExt_Genewise1Plus.C_chr_37003 1 0 U2 GTAAGTGA..TCAG LOC_Os01g40610.1 1 0 U2 GTGGGTGA..TCAG e_gw1.294.23.1 1 0 U2 GTTTGATC..TCAG estExt_Genewise1_v1.C_LG_XI3018 1 0 U2 GTAAAAAT..GTAG AT1G17130.1 1 0 U2 GTAAAGAC..ACAG
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	EKRKRDAEEMGDAMKALENRAMDSKQDMDILAALEEMRSMKSRHAGVSVDQMLEILKRSA EKIKRDAEEMGDAMKALENRAMDSKQDMDILAALEEMRSMKSRHAGVSVDQMLEILKRSA EKRKRDEEEMGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQMLEILKRSA AVKKREAEELGDAMKALENRTLDSKQEMDIMAALDEMKSMRSRHATVAVEDMMAALRRTA MKKKREAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVAEMLVALQRTA EKKKRVAEEMGDAMKSLENRTLDSKREIDILAALDEMKSMKSRHATVSVDAMLEALQRTA DKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTG QKQKRDAEEMGDVMKSLENRTLDSKREMDILAALDEMKSMRSRHATVTVDEMLEALQNTA MKEKREAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDEMLEALQRTA TKEKRDAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVTVDEMLEALQRTA TKEKRDAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVTVDEMLEALQRTA ------------------------------------------------------------	5: 160-160 estExt_Genewise1Plus.C_chr_37003 2 0 U2 GTTGGACC..ACAG LOC_Os01g40610.1 2 0 U2 GTAGAATA..GCAG e_gw1.294.23.1 2 0 U2 GTATGTTC..GCAG estExt_Genewise1_v1.C_LG_XI3018 2 0 U2 GTAATTAA..GCAG AT1G17130.1 2 0 U2 GTATGACA..GCAG Glyma13g33280.1 2 0 U2 GTACTTGC..CCAG Glyma15g39810.1 2 0 U2 GTACTTAC..CCAG Glyma15g39810.2 2 0 U2 GTACTTAC..CCAG
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	HGKEEKAIAELDEEDEELIKSITFRNSGFYVKRIEDDDDD---DDDDDDDLVPGQSSRTI HEKEEKAIAELDEEDEELIKSITFRNSGFYVKRIEDDDDD---DDEDLAP---------- HDKEEKTVAELDEEDEKLIKSITFRNSQDYVKRIEDDDDD---DEDLVIP---------- AEKDKE----LEEQDEAVIKSVIFQNSSKFVRRIDDDDLEDDGDEHYDEESSLNHAKS-- ADKEKR----IEEEDEALIKSIFSNKSEVPISRIRDEDIE---DEEELFQFSNGHGE--- SEKERK----LEEEDEALIKSLFQQRQTEVIRRISDEDSD---DDEDFN----------- AEKVKR----IEEEDEAVIKSI-FGKQKEVIRRIADEEIDDDYDDDDIDDYPSLQKEKKG EQKEKK----LEEEDEALIKSIVFHGSENFVRRIHDEDFD---DDDNDDVNPTSNGE--- ADKEKR----LEEEDEALIKSVVFHNSDGFVRRIRDEDIE---TEEELVQFSNGHGE--- ADKEKR----LEQEDEALIKSVVFHNSDGFVRRIRDEDIE---TEEQLDQFSNGHGE--- ADKEKR----LEQEDEALIKSVVFHNSDGFVRRIRDEDIE---TEEQLDQFSNGHGE--- ------------------------------------------------------------	6: 182-182 estExt_Genewise1Plus.C_chr_37003 3 0 U2 GTAAGACC..ACAG LOC_Os01g40610.1 3 0 U2 GTAAGATC..ACAG e_gw1.294.23.1 3 0 U2 GTAGATCT..TCAG estExt_Genewise1_v1.C_LG_XI3018 3 0 U2 GTACGAGT..ACAG AT1G17130.1 3 0 U2 GTATGCTC..ACAG Glyma13g33280.1 3 0 U2 GTATGATA..TCAG Glyma15g39810.1 3 0 U2 GTATGATA..TCAG Glyma15g39810.2 3 0 U2 GTATGATA..TCAG 7: 203-204 estExt_Genewise1Plus.C_chr_37003 4 0 U2 GTAATTCT..GCAG LOC_Os01g40610.1 4 0 U2 GTAATCCT..GCAG e_gw1.294.23.1 4 0 U2 GTACTTGT..ACAG estExt_Genewise1_v1.C_LG_XI3018 4 0 U2 GTTAGTAC..AAAG AT1G17130.1 4 0 U2 GTAAGTGT..GCAG Glyma13g33280.1 4 0 GC GCAAGTAT..ACAG Glyma15g39810.1 4 0 GC GCAAGTAT..ACAG Glyma15g39810.2 4 0 GC GCAAGTAT..ACAG
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	KVSEFFSLLFCVDVYI--PTHQLG---YDDTKNAYESIYYGPCF--------CSSKKSWI GQSSRTIKINESSESVTKPTDVLSKNNGSEVANKEGSKSWMPKF----IVKPKSASADSH GQSSSTSKMNGSSQSVSNATDVLTKTSGSDNANKEGNKIWPSKM-PKFIVKPKSTPTDPI MNGEGFVKVHLFELFLSRLWSNFG----------------------------RRVQL--- TSNDNPKRQKISEDLPRKATDTLTKASLDDSDKQEKLTAGRRKSN-------PLVTIAVI MSSDKLKKRKVADEVSSKPTDSLAKASVSDSSNNRKIQVLQGLK--------MMANLNLD SSSDLSKKRKATEVSPSNPTDILTSSSAENPKEPKKQAISKQPF--------KSVHIKVI TSSDNFKRRKVAEELPSKPTDSLTKASSFDRPNKKENSGSSGQNDAKFIFKSSSVKVSVV TSSSNPKGKRFQKIFQANQLTL-------------------------------------- TSSSNTKRQKISEDCPSKPTDTLTKASLDDSGKQENSRSGGKLN--------SLVRISVI TSSSNT---KISEDCPSKPTDTLTKASLDDSGKQENSRSGGKLN--------SLVRISVI ------------------------------------------------------------	8: 245-249 LOC_Os01g40610.1 5 0 U2 GTACTTAG..GTAG estExt_Genewise1_v1.C_LG_XI3018 5 0 U2 GTATGAGA..GCAG AT1G17130.1 5 0 U2 GTTCCTCT..ACAG Glyma13g33280.1 5 2 U2 GTTAAGAT..GCAG Glyma15g39810.1 5 0 U2 GTAAGATG..GCAG Glyma15g39810.2 5 0 U2 GTAAGATG..AAAG 9: 267-267 AT1G17130.1 6 1 U2 GTGGGTTT..CCAG 10: 273-274 LOC_Os01g40610.1 6 1 U2 GTAAAAAC..GCAG estExt_Genewise1_v1.C_LG_XI3018 6 2 U2 CGGTACTT..AACA Glyma15g39810.1 6 1 U2 GTATGTGC..GCAG Glyma15g39810.2 6 1 U2 GTATGTGC..GCAG
Sb~estExt_Genewise1Plus.C_chr_37003 Zm~GRMZM2G086236_T01 Os~LOC_Os01g40610.1 Pp~e_gw1.294.23.1 Mt~AC157535_30.2 Pt~estExt_Genewise1_v1.C_LG_XI3018 At~AT1G17130.1 Vv~GSVIVP00010394001 Gm~Glyma13g33280.1 Gm~Glyma15g39810.1 Gm~Glyma15g39810.2 Lj~LjSGA_081380.1	WSWR--------------------------------------------- KRQKIES---TAVQDTGKGQDDEQKSEPAKQTNVLQSLCQNYDSDDSE- KKQKTE----TTAGPDTGKAPVAEENSEPAQNNVLQSLCQNYDSDESE- ------------------------------------------------- KKPGIS----NVRSAEEDKQKKKEEDNKTNTTWGTTISVSKLWK----- PR----------------------------------------------- KKQPQP----TSSSTPAPAKPEEKKSDGA-ANTSLASLFQNYGSDEDED KRPVVASKGDNLAKLEERKQEEEKEPKNDGTSTGLQSLCQYYESDEDN- ------------------------------------------------- KKPVTS----DVKSPAEPEQKKQEKDNETNTASGLLSLCQNYGSDDED- KKPVTS----DVKSPAEPEQKKQEKDNETNTASGLLSLCQNYGSDDED- -------------------------------------------------
		3' UTR introns