SRGD	Gene ID 648	BLASTp at NCBI	n/a	n/a		Organisms Zm ,Os ,At ,Vv ,Sb ,Gm Gene count 12 Cintron count 12 Cintron classes U2 ,em ,im ,absent
Home (Search)						Bookmark for this page        Download data

		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	------------------------------------------------------------ -----------------------------------------------------------M ------------------------------------------------------------ -----------------------------------------------------------M -----------------------------------------------------------M -----------------------------------------------------------M -----------------------------------------------------------M MSPKGEICVRAGGSEGHRGDGVGGGHHVRGEGARCRGGLQSRAAAGRRGSPGRDYEICSM -----------------------------------------------------------M -----------------------------------------------------------M -----------------------------------------------------------M -----------------------------------------------------------M
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	MDYNSDR-----GYDDSYHHHVHDEQLPQSDFEVETFDDRRNGGAAVDTGGIQ--MKHSV DYYYVSQHSQLESEADAYNVDVNDEH-------VKPSFNRRDS------------FS--- -------MNCNCGFS----------------------------------------YV--- AGYPEENQHGMNGYEEE------EEVEEVEGFDEEGRPGRRGGGG--RDGGDGGAYGDAS AGYPEDNQHALNGYDDE----EVDE---------EGHPGRRGG----RDGASG--YGDAG AGYPEDNQHALNGYDDE----EVDE---------EGHPGRRGG----RDGASG--YGDAG AGYPEDNQHALNGYDEE----EVDEE--------EGHPGRRGG----RDGASG--YGDAG AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGS-------- AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV	2: 60-60 AT1G17640.1 0 0 U2 .. 3: 116-116 Glyma13g42480.1 0 2 U2 GTTAGTTA..TTAG
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	DHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVT ------------GKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVT -----------SRKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFIT GDDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDVRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDVRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDGRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT ------------GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT	4: 131-131 LOC_Os02g12850.1 1 2 U2 GTGGGTGG..GCAG GRMZM2G167356_T01 1 2 U2 GTGAGCGA..GCAG GRMZM2G167356_T02 1 2 U2 GTGAGCGA..GCAG Sb04g007860 0 2 U2 GTGAGCGA..GCAG 5: 145-145 Glyma13g42480.1 1 1 U2 GTATTCTC..TCAG GSVIVP00034188001 0 1 U2 GTATGCGA..TCAG LOC_Os02g12850.1 2 1 U2 GTGAACGG..GTAG GRMZM2G167356_T01 2 1 U2 GTAAAATT..GTAG GRMZM2G167356_T02 2 1 U2 GTAAAATT..GTAG Sb04g007860 1 1 U2 GTAAAATT..GTAG
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	FADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGL--------- FANSAVADEVLAQEHTIDHRVVEVKRTVPREDVDV--TGVFKTKKIFVGGIAQFFTDGIA FADPAVADKVLEEDHVIDGRAVEVKKTVPREGMEV--RGVSKTRKIFVGGI--------- FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSS--KDGPKTRKIFVGGL--------- FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMNT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMNT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMTT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL--------- FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------	6: 200-200 Glyma13g42480.1 2 0 U2 GTAACTTC..TTAG GSVIVP00034188001 1 0 U2 GTAAGTTG..TCAG LOC_Os02g12850.1 3 0 U2 GTAGGACA..TCAG GRMZM2G167356_T01 3 0 U2 GTAGGGCA..GCAG GRMZM2G167356_T02 3 0 U2 GTAGGGCA..GCAG Sb04g007860 2 0 U2 GTAGGACA..GCAG
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	--PPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHE NPPPLFFFDELREYFSPYGNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHE --PSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHE --PSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD --PASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD --PASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD --PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD	7: 247-247 Glyma13g42480.1 3 1 U2 GTTATATT..GTAG GSVIVP00034188001 2 1 U2 GTAATTTA..GCAG LOC_Os02g12850.1 4 1 U2 GTACTTAT..TTAG GRMZM2G167356_T01 4 1 U2 GTTGGTGT..TCAG GRMZM2G167356_T02 4 1 U2 GTTGGTGT..TCAG Sb04g007860 3 1 U2 GTAGGTGT..TCAG
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	LGDKQVEIKRAEPKRTGRD---NSFRSYGASGKYDQEDSYSGKAN---EDYS-M-YSG-- IGGKQVEIKRAEPKRSGVDYCNTSRKSYG-GFGNEMDGHGGNSSRNRNHGKRGGQYTG-- LGGKLVEIKKAEPKRAGAEYNAGAAKFYG--GRNGSQGGHGGKMG---GGDA-G-YGG-- LGGKQVEIKKAEPKKHGGDHSSNGRSSHGSGGGYRSSYRSGGAAA---SGGG-G-GGGGG LGGKQVEIKKAEPKKHGSDNIGNGRSSQG-GGGYRSTYRGGGGAG---SGSS-GSGGG-- LGGKQVEIKKAEPKKHGSDNIGNGRSSQG-GGGYRSTYRGGGGAG---SGSS-GSGGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSSHG-GGGYRSSYRSGGGAGNASSGSS-GGGGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG-- LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--	8: 304-304 Glyma13g42480.1 4 0 U2 GTTAGTGA..TTAG GSVIVP00034188001 3 0 U2 GTAAAAGT..TTAG LOC_Os02g12850.1 5 0 U2 GTTAGAAA..TCAG GRMZM2G167356_T01 5 0 U2 GTTAGATT..TCAG GRMZM2G167356_T02 5 0 U2 GTTAGATT..TCAG Sb04g007860 4 0 U2 GTTAGATT..CCAG
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	-------YGGYGGYGAYAGNS---MVNPAGF--------YGYGGGYG---YGYGYGGQMF -------SGMNGAYGHFDGSF---GGSAATV--------YGGYCGYG---YEFGYGGPMY -------YTSYGGYDSYGMGY---GGVAAGF-YGA----YCNPDGYGRYMYGYGFGAPMY GSGSSGGYGYGAGYRSAGGGY-YDSTA---YGYGRGGYGYGGNAGFGSG-YGGGYGGSLY ------GYGFGDAYRSAAASYGYDGGAGAGYGYGR-GYGYGGNAGFASG-FGGGYGGSMY ------GYGFGDAYRSAAASYGYDGGAGAGYGYGR-GYGYGGNAGFASG-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSG-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY ------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	NM-GYGA-GGYSHMGS---GY--GVAAAAAYGGGKSHGNGNNGSSSGKGN---------- CFGGYGL-NSYGNPGG----YGSGI---TSYGDVNAYGRA--GSFNGSGGYDSSKVA--- GCTGYGTLNGYG--GAIATGYGGG--GGKGYGNGIGHGGGK------------------- GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGG-AYGGAP-GAYGGAGGYGSYGGA--- GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGS-AYGGAPGGGY-GTGGYGSYGGA--- GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGS-AYGGAPGGGY-GTGGYGSYGGA--- GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGG-AYGGAP-GGY-GTGGYGGYGGAGGA GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA--- GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA--- GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA--- GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA--- GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
At~AT1G17640.1 Gm~Glyma13g42480.1 Vv~GSVIVP00034188001 Os~LOC_Os02g12850.1 Zm~GRMZM2G167356_T01 Zm~GRMZM2G167356_T02 Sb~Sb04g007860 Zm~GRMZM2G139643_T01 Zm~GRMZM2G139643_T05 Zm~GRMZM2G139643_T02 Zm~GRMZM2G139643_T03 Zm~GRMZM2G139643_T04	-GTNGSGP------DRYHPYQK --EKGDGPT----TGRYHPYWK -GHLGGNTV----TGRYHPY-- ----GAGGAGGRGSSRYHPYGK -GGTGGGSTGARGSSRYHPYGK -GGTGGGSTGARGSSRYHPYGK SGGTGGGSTGARGSSRYHPYGK -GSTGGGSTGARGSSRYHPYGK -GSTGGGSTGARGSSRYHPYGK -GSTGGGSTGARGSSRYHPYGK -GSTGGGSTGARGSSRYHPYGK -GSTGGGSTGARGSSRYHPYGK