SRGD Gene ID 648 BLASTp at NCBI n/a n/a  
OrganismsZm ,Os ,At ,Vv ,Sb ,Gm
Gene count12
Cintron count12
Cintron classesU2 ,em ,im ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
------------------------------------------------------------
-----------------------------------------------------------M
------------------------------------------------------------
-----------------------------------------------------------M
-----------------------------------------------------------M
-----------------------------------------------------------M
-----------------------------------------------------------M
MSPKGEICVRAGGSEGHRGDGVGGGHHVRGEGARCRGGLQSRAAAGRRGSPGRDYEICSM
-----------------------------------------------------------M
-----------------------------------------------------------M
-----------------------------------------------------------M
-----------------------------------------------------------M
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
MDYNSDR-----GYDDSYHHHVHDEQLPQSDFEVETFDDRRNGGAAVDTGGIQ--MKHSV
DYYYVSQHSQLESEADAYNVDVNDEH-------VKPSFNRRDS------------FS---
-------MNCNCGFS----------------------------------------YV---
AGYPEENQHGMNGYEEE------EEVEEVEGFDEEGRPGRRGGGG--RDGGDGGAYGDAS
AGYPEDNQHALNGYDDE----EVDE---------EGHPGRRGG----RDGASG--YGDAG
AGYPEDNQHALNGYDDE----EVDE---------EGHPGRRGG----RDGASG--YGDAG
AGYPEDNQHALNGYDEE----EVDEE--------EGHPGRRGG----RDGASG--YGDAG
AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV
AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGS--------
AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV
AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV
AGYPEDNQHELNGYDEE-----VDEE--------EGHPGRRVG----RDGGSG--YAVAV
2: 60-60
AT1G17640.1 0 0 U2 ..
3: 116-116
Glyma13g42480.1 0 2 U2 GTTAGTTA..TTAG
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
DHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVT
------------GKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVT
-----------SRKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFIT
GDDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDVRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDVRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDGRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
------------GKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
GEDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVT
4: 131-131
LOC_Os02g12850.1 1 2 U2 GTGGGTGG..GCAG
GRMZM2G167356_T01 1 2 U2 GTGAGCGA..GCAG
GRMZM2G167356_T02 1 2 U2 GTGAGCGA..GCAG
Sb04g007860 0 2 U2 GTGAGCGA..GCAG
5: 145-145
Glyma13g42480.1 1 1 U2 GTATTCTC..TCAG
GSVIVP00034188001 0 1 U2 GTATGCGA..TCAG
LOC_Os02g12850.1 2 1 U2 GTGAACGG..GTAG
GRMZM2G167356_T01 2 1 U2 GTAAAATT..GTAG
GRMZM2G167356_T02 2 1 U2 GTAAAATT..GTAG
Sb04g007860 1 1 U2 GTAAAATT..GTAG
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
FADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGL---------
FANSAVADEVLAQEHTIDHRVVEVKRTVPREDVDV--TGVFKTKKIFVGGIAQFFTDGIA
FADPAVADKVLEEDHVIDGRAVEVKKTVPREGMEV--RGVSKTRKIFVGGI---------
FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSS--KDGPKTRKIFVGGL---------
FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMNT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMNT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMTT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------
FSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMIT--KDGPKTRKIFIGGL---------
6: 200-200
Glyma13g42480.1 2 0 U2 GTAACTTC..TTAG
GSVIVP00034188001 1 0 U2 GTAAGTTG..TCAG
LOC_Os02g12850.1 3 0 U2 GTAGGACA..TCAG
GRMZM2G167356_T01 3 0 U2 GTAGGGCA..GCAG
GRMZM2G167356_T02 3 0 U2 GTAGGGCA..GCAG
Sb04g007860 2 0 U2 GTAGGACA..GCAG
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
--PPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHE
NPPPLFFFDELREYFSPYGNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHE
--PSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHE
--PSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD
--PASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD
--PASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD
--PPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISEGRMRD
7: 247-247
Glyma13g42480.1 3 1 U2 GTTATATT..GTAG
GSVIVP00034188001 2 1 U2 GTAATTTA..GCAG
LOC_Os02g12850.1 4 1 U2 GTACTTAT..TTAG
GRMZM2G167356_T01 4 1 U2 GTTGGTGT..TCAG
GRMZM2G167356_T02 4 1 U2 GTTGGTGT..TCAG
Sb04g007860 3 1 U2 GTAGGTGT..TCAG
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
LGDKQVEIKRAEPKRTGRD---NSFRSYGASGKYDQEDSYSGKAN---EDYS-M-YSG--
IGGKQVEIKRAEPKRSGVDYCNTSRKSYG-GFGNEMDGHGGNSSRNRNHGKRGGQYTG--
LGGKLVEIKKAEPKRAGAEYNAGAAKFYG--GRNGSQGGHGGKMG---GGDA-G-YGG--
LGGKQVEIKKAEPKKHGGDHSSNGRSSHGSGGGYRSSYRSGGAAA---SGGG-G-GGGGG
LGGKQVEIKKAEPKKHGSDNIGNGRSSQG-GGGYRSTYRGGGGAG---SGSS-GSGGG--
LGGKQVEIKKAEPKKHGSDNIGNGRSSQG-GGGYRSTYRGGGGAG---SGSS-GSGGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSSHG-GGGYRSSYRSGGGAGNASSGSS-GGGGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--
LGGKQVEIKKAEPKKHGSDHSSNGRSNHG-GGAYRNSYRSGGGAG---SGSS-G-GGG--
8: 304-304
Glyma13g42480.1 4 0 U2 GTTAGTGA..TTAG
GSVIVP00034188001 3 0 U2 GTAAAAGT..TTAG
LOC_Os02g12850.1 5 0 U2 GTTAGAAA..TCAG
GRMZM2G167356_T01 5 0 U2 GTTAGATT..TCAG
GRMZM2G167356_T02 5 0 U2 GTTAGATT..TCAG
Sb04g007860 4 0 U2 GTTAGATT..CCAG
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
-------YGGYGGYGAYAGNS---MVNPAGF--------YGYGGGYG---YGYGYGGQMF
-------SGMNGAYGHFDGSF---GGSAATV--------YGGYCGYG---YEFGYGGPMY
-------YTSYGGYDSYGMGY---GGVAAGF-YGA----YCNPDGYGRYMYGYGFGAPMY
GSGSSGGYGYGAGYRSAGGGY-YDSTA---YGYGRGGYGYGGNAGFGSG-YGGGYGGSLY
------GYGFGDAYRSAAASYGYDGGAGAGYGYGR-GYGYGGNAGFASG-FGGGYGGSMY
------GYGFGDAYRSAAASYGYDGGAGAGYGYGR-GYGYGGNAGFASG-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSG-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
------GYGYGGAYRSAAAGYGYDGGAGAGYGYGR-GYGYGGNAGFGSS-FGGGYGGSMY
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
NM-GYGA-GGYSHMGS---GY--GVAAAAAYGGGKSHGNGNNGSSSGKGN----------
CFGGYGL-NSYGNPGG----YGSGI---TSYGDVNAYGRA--GSFNGSGGYDSSKVA---
GCTGYGTLNGYG--GAIATGYGGG--GGKGYGNGIGHGGGK-------------------
GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGG-AYGGAP-GAYGGAGGYGSYGGA---
GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGS-AYGGAPGGGY-GTGGYGSYGGA---
GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGS-AYGGAPGGGY-GTGGYGSYGGA---
GG-AYGAYGAYG--GG---AYGGGAYGGGAYGGG-AYGGAP-GGY-GTGGYGGYGGAGGA
GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
GGAAYGAYGAYG--GG---AYGGGAYGGGAYGGGAAYGGAP-GGY-GTGGYGSYGGA---
At~AT1G17640.1
Gm~Glyma13g42480.1
Vv~GSVIVP00034188001
Os~LOC_Os02g12850.1
Zm~GRMZM2G167356_T01
Zm~GRMZM2G167356_T02
Sb~Sb04g007860
Zm~GRMZM2G139643_T01
Zm~GRMZM2G139643_T05
Zm~GRMZM2G139643_T02
Zm~GRMZM2G139643_T03
Zm~GRMZM2G139643_T04
-GTNGSGP------DRYHPYQK
--EKGDGPT----TGRYHPYWK
-GHLGGNTV----TGRYHPY--
----GAGGAGGRGSSRYHPYGK
-GGTGGGSTGARGSSRYHPYGK
-GGTGGGSTGARGSSRYHPYGK
SGGTGGGSTGARGSSRYHPYGK
-GSTGGGSTGARGSSRYHPYGK
-GSTGGGSTGARGSSRYHPYGK
-GSTGGGSTGARGSSRYHPYGK
-GSTGGGSTGARGSSRYHPYGK
-GSTGGGSTGARGSSRYHPYGK