SRGD Gene ID 640 BLASTp at NCBI n/a n/a  
OrganismsMt ,Pp ,Lj ,Vv ,Sb ,Os ,Gm ,At ,Zm
Gene count12
Cintron count9
Cintron classesU2 ,im ,GC ,absent ,em
Home (Search) Bookmark for this page        Download data


Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
MFACLEIRARSKGHFSKLGWKNVIKAFNNLTGRNYQYRQLKNKWSSIKKDWQLWNTLIRK
------------------------------------------------------------
------------------------------------------------------------
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------------MEASA
-------------------------------------------------------MD---
-------------------------------------------------------MD-AA
-------------------------------------------------------MD-AA
-------------------------------------------------------MD-AA
-------------------------------------------------------MEVSN
-------------------------------------------------------ME-LA
EIGLGWDPMRQTINASNEWWDKKLNVPQSDYIQNLSAPFRLLTLDSRVYNVLLQAME-LA
-------------------------------------------------------MEVAA
-------------------------------------------------------ME-AA
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
MGH---------------------------------------------VIVLSQTTS---
MGH---------------------------------------------VIVLSQTTS---
DI----------------------------------------------VEVIDVRRLKKL
AAH----KRKRPDADDDGAAG----------AVDLSSLEGADD-----VEVLDLRAAKRL
AVH----KRKRPDESDPGAG-----------ELDLSAADA--------VEVLDLRAAKRL
AVH----KRKRPEEADPSAG-----------ELDLSAADA--------VEVLDLRAAKRL
AVH----KRKRPEEADPSAG-----------ELDLSAADA--------VEVLDLRAAKRL
QTR----KRKAIDA----GHGSQPTAYRGSDGVDLSLLEALEKSSHNGVEALDLKTLKKL
NARS-ALKRKRNDAIEPFDNGTAAAATTDVSSIDLSLLEAVEKSQTT-VEVLDLKTLKKL
NARS-ALKRKRDDAIEPFDNGTAATATTDASSVDLSLLEAVEKSQTT-VEVLDLKTLKRL
NARNPAAKRKFDDAVSNGVAAPA--------DVDLSLLEAIEKSQNA-VEALDLRALKKH
NARNPATKRKFDGAPSSNNGFTNGTTTTNTNTVDLSLLEAIEKSQHT-IEAVDLRTLKKL
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
----EIHLHQLTPQCITTKTDSAR-------LHEELHKLKVLAGAPKLYPDLVNLNVVPS
----EIHLHQLTPQCITTKTDSAR-------LHEELHKLKVLAGAPKLYPDLVNLNVVPS
VLGFERKLRDNLEARMKFFDQPEKFMESEMDLDEEVKKLHALAANPDLYPELVRLGSVPS
LLAFERRLRDNLEARMKHPDDPARFADSEIALHAETDRLRLLAGAPDLFPDLVPLGLASS
LLAFERRLRDNLEARMKYPDDPARFADSEIALHAETDRLRLLAGAPELFPDLVPIGLASS
LLAFERRLRDNLEARMKYPDDPARFADSEIALHAETDRLRLLAGAPELFPDLVPIGLASS
LLAFERRLRDNLEARMKYPDDPARFADSEIALHAETDRLRLLAGAPELFPDLVPIGLASS
VLSFERRLRDNIAARLKYVENPEKFADSEVDLHDDLQKLKVLAGAPELYPDLVASNTVPS
VLAFERRLRDNIEARLKYPDQPDKFADSEIELHDEIQRLKTLAGGPELYPDLVNLNVIPS
VLAFERRLRDNIEARLKYPDQPDKFADSEIELHEEIQRLKTLAGGPELYPDLVNLNVIPS
VLSFERRLKDNIEARLKYPNQPDRFADSEVELHEELQKLKVLAGAPELYPDLVNLNVVPS
VLAFERRLKDNIEARLKYPNQPDRFADSEVELHEELQKLKVLAGAPELYPDLVNLNVVPS
1: 203-203
AC137821_32.2 0 0 U2 GTTGGCAC..GGAG
AC171395_9.2 0 0 U2 GTTGGCAC..GGAG
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
IVDLLNHDNTDIAIDVVTLIQDLTDENVLDENDEPAKVLVDALVDSSALEPLVQNLHRLS
IVDLLNHDNTDIAIDVVTLIQDLTDENVLDENDEPAKVLVDALVDSSALEPLVQNLHRLS
ILGLLGHDNTDIAMSVVTLLSDLTDEDVIGESDEPALVLVDALIENNALELLVQNLGRMD
LSSLLTHDNADLAAAAASLLADLTDSDDPDDL-AGLHSLADALVEANALDLLVHNLSRFS
LASLLTHDNVDLAAAAASLLADLTDSEDPSDL-AAVQALADALVDANALDLLVHNLSRFS
LASLLTHDNVDLAAAAASLLADLTDSEDPSDL-AAVQALADALVDANALDLLVHNLSRFS
LASLLTHDNVDLAAAAASLLADLTDSEDPSDL-AAVQALADALVDANALDLLVHNLSRFS
IVNLLSHENSDIANDVVQLLQDLTDEDALEDNDEPARVLVDALVENNVLELLVQNMNRLS
ILGLLSHDNSDIAVDVVGLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNLTRLS
ILGLLSHDNSDIAVDVVGLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNLTRLS
IVDLLNHDNTDIAIDVVQLLQDLTDEDVLDDNDDSARVLVDALVDNSALELLVQNLHRLN
IVDLLSHDNTDISIDVVQLLQDLTDEDVLDDNDDPAKALVDALVDSSALELLVQNLHRLS
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
EKDADENAAVYNTLAKIENLIEVKP----------RWRRWFVRRR---------------
EKDADENAAVYNTLAKIENLIEVKP----------RWRRWFVRRR---------------
EVDSDEAACVFNTLSIIENMTEVKPAVAELVCERTKFLRWILNRIKLREFDSNKFYASEI
EADPDEAEAVHHTLSVVENLLELRPQLADIVCDRTKLLRWLLARLKAREFDANKQYASEI
ETDSDEAEAVHNTLAVLENLLDLRPNLADKVCDGTKLLRWLLSRLKAREFDANKQYASEI
ETDPDEAEAVHNTLAVLENLLDLRPNLADKVCGGTKLLRWLLSRVKAREFDANKQYASEI
ETDPDEAEAVHNTLAVLENLLDLRPNLADKVCGGTKLLRWLLSRVKAREFDANKQYASEI
EADPDEATAIYATLTVIENLVEVKPAVAQLVCERTKLLRWLLTKIKVREFEGIKQYASEI
ESDPDEMAAVYATLSTLENLIEVKPAVAEMVCERTKLMRWLLGKIKVREFDSNKQYASEI
EFDPDEMAAVYATLATLENLIEVKPAVAEMVCERTKLMRWLLGKIKVREFDSNKQYASEI
DSDPDENAAVYGSLATVENMIEVKPAVAELVCEKTKLLKWLLGKIKVREFDSNKQYASEI
DSDPDENAAIYNTLATIENLIEVKPSVAELVCEKTKILKWLLGKIKVREFDGNKQYASEI
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
--------------------------------------------------C---------
--------------------------------------------------C---------
LAILLQNSEANQKRVGQLNGVDTLLQAVAFYKSRDPKTSEEEEMLENLFNSLCSVVMPME
LAILLQDSPANQKRLGNINGVDGLLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMPME
LAILLQNSPANQKRLGQINGVDALLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMPLE
LAILLQNSPANQKRLGQINGVDALLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMPLE
LAILLQNSPANQKRLGQINGVDALLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMPLE
LAILLQNSTANQKRLGQMNGVDAVLEGVAMYKSKDPKTPDEEEMLENLFDCLCCLLMPLE
LAILLQNSAANQRRLGQMNGVDVVLQAVAMYKSRDPKTADEEEMVENLFDCLCCLLMPLE
LAILLQNSAANQRRLGQMNGVDVVLQAVAMYKSRDPKTADEEEMVENLFDCLCCLLMPLE
LAILLQSSTVNQKKLGQMNGVDVVLQAVAMYKSKDPKSSDEEEMLENLFDCLCCLLMPLE
LAILLQSSTANQKRLGQMNGVDVVLQAVAMYKSKDPKSSDEEEMLENLFDCLCCLLMPLE
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
----FLRIKEVCFFFV--------FG--------------------------------YF
----FLRIKEVCFFFV--------FG--------------------------------YF
NKDRFVKAEGVELMIIIMKQKRLAYGSAMKALDFAMTRCSAACERFVDVLGLKTLFAAFM
NKERFVKAEGVELMIIIMKQKKLAYSSAIRTLDFAMTRFPPACERFVDVLGLKTAFAAFM
NKERFVKAEGVELMIIIMKQKKLAYSSAIRTLDFAMTKFPPACERFVDVLGLKTAFAAFM
NKERFVKAEGVELMIIIMKQKKLAYSSATRTLDFAMTKFPPACERFVDVLGLKTAFAAFM
NKERFVKAEGVELMIIIMKQKKLAYSSATRTLDFAMTKFPPACERFVDVLGLKTAFAAFM
NKERFVNAEGVELMIIIMKQKKYAYGSAIRALDFAMTNYPPACERFVDVMGLKTAFAAFM
NKERFVRAEGVELMIIIMKQKK---------------------------LHLRLS---WV
NKERFVRAEGVELMIIIMKQKKLAYGSAIRALDFAMTKYPPACERFVDVLHLRLS---WV
NKERFVKAEGVELMIIIMKQKKLAYGSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFM
NKERFVKAEGVELMIIIMKQKKLAYGSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFM
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
HKI---------------------------------------------------------
HKI---------------------------------------------------------
GKIPVKGKNRGDRNYEEIEERVISITSSLFGSLTRGSRRERLLNKFMENEFEKVDRLMEL
GKIPVNKKNKKESYQEALEERVISLIASLFGGITKGSRRIRLLGKFVENECEKIDRLMEF
GKIPVNKKNKKESYQEELEERIISLIASLFGGISKGSRRMRLLGKFVENECEKIDRLMEF
GKIPVNKKNKKESYQEELEERIISLIASLFGGITKGSRRMRLLGKFVENECEKIDRLMEL
GKIPVNKKNKKESYQEELEERIISLIASLF-----GSRRMRLLGKFVENECEKIDRLMEL
GKIPLNKRIKRERYKEELEERVISLIASLFAGILRGSRRDRLLSKFVENEFEKIDRLMEL
RQIPMSKKNKKERYQEELEERIISLIASLFGGILRGSRRDRLLSKFVENECEKIDRLMEL
RQIPMSKKNKKERYQEELEERIISLIASLFGGILRGSRRDRLLSKFVENECEKIDRLMEL
GKVPLSKKNKKERYQEDLEERIVSLIASLFGGILRGSRRERLLSKFVENECEKIDRLMEL
GKIPISKKNKKERYQEDLEERIVSLIASLFGGILRGSRRDRLLSKFVENECEKIDRL---
2: 481-481
fgenesh1_pg.scaffold_294000001 0 0 U2 GTACTCGA..TCAG
LOC_Os02g58460.1 0 0 GC GCAAGTGT..TCAG
Sb04g038390 0 0 GC GCAAGTAA..CCAG
GRMZM2G043331_T01 0 0 GC GCAAGTAA..ACAG
GRMZM2G043331_T02 0 0 GC GCAAGTAA..ACAG
AT3G02710.1 0 0 GC GCAAGTTT..TTAG
Glyma18g05210.1 0 1 U2 CAAGTGAT..TAGA
3: 509-509
fgenesh1_pg.scaffold_294000001 1 1 U2 GTGAGACT..GCAG
LOC_Os02g58460.1 1 1 U2 GTAAGCAA..TTAG
Sb04g038390 1 1 U2 GTAAGCAG..TTAG
GRMZM2G043331_T01 1 1 U2 GTAAGCAG..TTAG
GRMZM2G043331_T02 1 1 U2 GTAAGCAG..AAAG
AT3G02710.1 1 1 U2 GTAAGAAG..TCAG
Glyma18g05210.1 1 2 U2 TAAGCAGG..CAGG
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
------------------------------------------------------------
------------------------------------------------------------
YLRYSDRVKAESKRLDEPDDDDDQMDDDEKYLAKLEAGLYTLQLLALILAHIWASENVGI
YTRYSERVKAETERLDSLDLDDLEMDEDERYNRKLEAGLYTLQLIALILGHIWHSGNSQM
YTRYSDRVKEETERLDSLDLEDLEMDDDERYNRKLEAGLYTLQLIALILGHIWHSGNSQM
YTRYSDRVKEETERLDSLDLEDLEMDDDERYNRKLEAGLYTLQLIALILGHIWHSGNSQM
YTRYSDRVKEETERLDSLDLEDLEMDDDERYNRKLEAGLYTLQLIALILGHIWHSGNSQM
YLRYSDRVRSEAERLDQLELDDLELDEDEKYNRKLESGLYSLQLVAVILGHIWCSEHSGM
YIRYSDRVKAETKRMNQLKLDDLEMDEDERYNRRLEAGLYTLQLISIILGHLWSSENPRM
YIRYSDRVKAETERMNQLKLDDLEMDEDERYNRRLEVGLYTLQLISIILGHLWSSENPRM
YIRYSDRVKAETERLNQVELDDLEVDEDEKYNRKLESGLYTLQVIAVILGHLWCSEHPQM
------------------------------------------------------------
4: 541-542
fgenesh1_pg.scaffold_294000001 2 2 U2 GTGGGTCA..ACAG
LOC_Os02g58460.1 2 2 U2 GTATATTT..GCAG
Sb04g038390 2 2 U2 GTATATCT..ACAG
GRMZM2G043331_T01 2 2 U2 GTATATCT..ACAG
GRMZM2G043331_T02 2 2 U2 GTATATCT..ACAG
AT3G02710.1 2 2 U2 GTAATAGA..GCAG
Glyma18g05210.1 2 0 U2 TAGGTTGG..CAGA
5: 563-563
fgenesh1_pg.scaffold_294000001 3 0 U2 GTCAGTTA..GCAG
LOC_Os02g58460.1 3 0 U2 GTGCTTTT..TCAG
Sb04g038390 3 0 U2 GTGCCTTT..CCAG
GRMZM2G043331_T01 3 0 U2 GTGCCTTC..TCAG
GRMZM2G043331_T02 3 0 U2 GTGCCTTC..TCAG
AT3G02710.1 3 0 U2 GTAATTTC..TCAG
Glyma18g05210.1 3 1 U2 TAGTTGAC..TAGA
6: 582-582
fgenesh1_pg.scaffold_294000001 4 0 U2 GTGGGCTT..GCAG
LOC_Os02g58460.1 4 0 U2 GTACCATA..TCAG
Sb04g038390 4 0 U2 GTATTGTT..TCAG
GRMZM2G043331_T01 4 0 U2 GTATTGAC..TCAG
GRMZM2G043331_T02 4 0 U2 GTATTGAC..TCAG
AT3G02710.1 4 0 U2 GTTCGATT..GCAG
Glyma18g05210.1 4 1 U2 CAAGATTT..CAGT
7: 594-595
fgenesh1_pg.scaffold_294000001 5 2 U2 GTAAGTTT..TCAG
LOC_Os02g58460.1 5 2 U2 GTAAGTGA..TCAG
Sb04g038390 5 2 U2 GTTAGTAA..TCAG
GRMZM2G043331_T01 5 2 U2 GTAATATT..TCAG
GRMZM2G043331_T02 5 2 U2 GTAATATT..TCAG
AT3G02710.1 5 2 U2 GTAAGTCC..GTAG
Glyma18g05210.1 5 0 U2 TAAGTATT..CAGG
Mt~AC137821_32.2
Mt~AC171395_9.2
Pp~fgenesh1_pg.scaffold_294000001
Os~LOC_Os02g58460.1
Sb~Sb04g038390
Zm~GRMZM2G043331_T01
Zm~GRMZM2G043331_T02
At~AT3G02710.1
Vv~GSVIVP00002674001
Vv~GSVIVP00023517001
Gm~Glyma18g05210.1
Lj~LjSGA_011794.1
------------------------------------------------------
------------------------------------------------------
RERIGLLLKQRRLSREDIKVVLQEYHDNIGDTEGLEERDKRRGKIQRLLSSM--
RTRIELLLRQNKLTKDDVKDILEEYHDNIGDLDGPEEKERAQGRTKEIIASLSL
RARVELLLKQNKLTKQDVKDILEEYHDNIGDLDGPEEKERAQSRTKEINAVL--
RARVELLLKQNKLTKQDVKSILEEYHDNIGDLDGPEEKERAQVRTKEIIDAL--
RARVELLLKQNKLTKQDVKSILEEYHDNIGDLDGPEEKERAQVRTKEIIDAL--
RARVELLLKQQKLSKTDVKQILQEYHDNIGDLDGAEEKERGQARIQLFISAM--
RARIELLLKQQRITKEDIIDILQEYHDNIGDVDGPEEKERAQAKIQKFILAF--
QARIELLLNQQRITKEDIKDILQEYHDNIGDVDGQEEKERAQAKIQKFISAF--
RGRIELLLKQNKLSKKHIKDILQEYHDNIGDLDGPEEKERAQTKIQKFITAL--
------------------------------------------------------
8: 622-622
fgenesh1_pg.scaffold_294000001 6 0 U2 GTGAGGAA..ACAG
LOC_Os02g58460.1 6 0 U2 GTATGCGC..GCAG
Sb04g038390 6 0 U2 GTGCACCA..GCAG
GRMZM2G043331_T01 6 0 U2 GTGCGCCC..TCAG
GRMZM2G043331_T02 6 0 U2 GTGCGCCC..TCAG
AT3G02710.1 6 0 U2 GTTTTCTA..ACAG
Glyma18g05210.1 6 1 U2 TATATGCC..CAGG


3' UTR introns