SRGD Gene ID 635 BLASTp at NCBI n/a n/a  
OrganismsAt ,Lj ,Vv ,Sb ,Pt ,Os ,Gm ,Zm
Gene count12
Cintron count17
Cintron classesU2 ,im ,absent ,U12 ,em
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
At~AT5G44200.1
Vv~GSVIVP00018636001
Os~LOC_Os02g39890.1
Sb~estExt_fgenesh1_kg.C_chr_40228
Zm~GRMZM2G034804_T01
Zm~GRMZM2G034804_T02
Zm~GRMZM2G034804_T06
Pt~estExt_Genewise1_v1.C_LG_VII0586
Gm~Glyma12g33400.1
Gm~Glyma13g37030.1
Pt~estExt_fgenesh4_pm.C_640064
Lj~chr3.CM0160.780.nd
MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI
MALLFKDPSKLSAYRDKRFPGTQEDFEHALLTSMTVYIGNMSFYTTEEQVYELFSRAGEI
MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI
MASLFKDPSKLSAYRDRRFKGTQEEYEATLLASTTLYIGNMSFYTTEEQAYELFSRAGEI
MASLFKDPSKLSAYRDRRFKGTQEEYEAALLASTTLYIGNMSFYTTEEQAYELFSRAGEI
MASLFKDPSKLSAYRDRRFKGTQEEYEAALLASTTLYIGNMSFYTTEEQAYELFSRAGEI
MASLFKDPSKLSAYRDRRFKGTQEEYEAALLASTTLYIGNMSFYTTEEQAYELFSRAGEI
MASLFKDLTKLSAYRDRRFPGNQEEFEHALQTATTVYIGNMSFYTTEEQVYELFSRAGEI
MALLFKDPSKISAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEI
MALLFKDPSKISAYRDRRFPGTQEEFEHALVTSTTVYVGNMSFYTTEEQVYELFSRTGEI
MASLFKDLTKLSAYRDRRFPGNQEEFEQALQTSTTVYIGNMSFYSTEEQVYELFSRAGEI
MASLFKDLTKLSAYRDRRFPGTQDEFEQALLASTTVYVGNMSFYTTEEQVYELFSRAGEI
2: 0-0
AT5G44200.1 0 0 U2 ..
3: 5-5
GSVIVP00018636001 0 0 U2 GTACTGCT..TTAG
LOC_Os02g39890.1 0 0 U2 GTACGGAT..CCAG
estExt_fgenesh1_kg.C_chr_40228 0 0 U2 GTACGGAT..CCAG
GRMZM2G034804_T01 0 0 U2 GTACGGAT..CCAG
GRMZM2G034804_T02 0 0 U2 GTACGGAT..CCAG
GRMZM2G034804_T06 0 0 U2 GTACGGAT..CCAG
estExt_Genewise1_v1.C_LG_VII0586 0 0 U2 GTAAACTC..TCAG
Glyma12g33400.1 0 0 U2 GTACGATT..GTAG
Glyma13g37030.1 0 0 U2 GTACGATT..GTAG
estExt_fgenesh4_pm.C_640064 0 0 U2 GTAAATTC..TCAG
chr3.CM0160.780.nd 0 0 U2 GTACACCA..GTAG
At~AT5G44200.1
Vv~GSVIVP00018636001
Os~LOC_Os02g39890.1
Sb~estExt_fgenesh1_kg.C_chr_40228
Zm~GRMZM2G034804_T01
Zm~GRMZM2G034804_T02
Zm~GRMZM2G034804_T06
Pt~estExt_Genewise1_v1.C_LG_VII0586
Gm~Glyma12g33400.1
Gm~Glyma13g37030.1
Pt~estExt_fgenesh4_pm.C_640064
Lj~chr3.CM0160.780.nd
KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSRDDAEDAVKYISGTVLDDRPIRVDFDWGFQEGRQWG
RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQEGRQWG
KKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWG
KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWG
KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFMSGTILDDRPIRVDFDWGFQEGRQWG
KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYVSGTILDDRPIRVDFDWGFQEGRQWG
4: 79-79
GSVIVP00018636001 1 2 U2 GTAAGGTT..TCAG
LOC_Os02g39890.1 1 2 U2 GTACCCTC..TCAG
estExt_fgenesh1_kg.C_chr_40228 1 2 U2 GTGCGGGC..CCAG
GRMZM2G034804_T01 1 2 U2 GTGCGGGC..CCAG
GRMZM2G034804_T02 1 2 U2 GTGCGGGC..CCAG
GRMZM2G034804_T06 1 2 U2 GTGCGGGC..CCAG
estExt_Genewise1_v1.C_LG_VII0586 1 2 U2 GTAAGTAT..TTAG
Glyma12g33400.1 1 2 U2 GTGAGTCT..GTAG
Glyma13g37030.1 1 2 U2 GTAAGTCT..GTAG
estExt_fgenesh4_pm.C_640064 1 2 U2 GTAAGTCT..TTAG
chr3.CM0160.780.nd 1 2 U2 GTAAGTCC..CTAG
At~AT5G44200.1
Vv~GSVIVP00018636001
Os~LOC_Os02g39890.1
Sb~estExt_fgenesh1_kg.C_chr_40228
Zm~GRMZM2G034804_T01
Zm~GRMZM2G034804_T02
Zm~GRMZM2G034804_T06
Pt~estExt_Genewise1_v1.C_LG_VII0586
Gm~Glyma12g33400.1
Gm~Glyma13g37030.1
Pt~estExt_fgenesh4_pm.C_640064
Lj~chr3.CM0160.780.nd
RGRSGGQVRDEYRTDYDPA--------RGGYGKLVQKELEAQRQLVDYGTGSLGAYPQAA
RGRSGGQVRDEYRTDYDPD------------------------ILLNV------------
RGRSGGQVRDEYRTDYDPG--------RGGYGKMVQKELEAQRELVDYG----GAFQPNA
RGRSGGQVRDEYRTDYDPG--------RGGYGKMVQRELEAQRELVDYG----GSFQPNA
RGRSGGQVRDEYRTDYDPG--------RGGYGKMVLRELEAQRELVDYG----GSFQPNA
RGRSGGQVRDEYRTDYDPG--------RGGYGKMVLRELEAQRELVDYG----GSFQPNA
RGRSGGQVRDEYRTDYDPD-------------------------IL--------------
RGRSGGQVRDEYRTDYDPG--------RGGYGKLVQRELEVQRQLVDYGAGSLGSFPAVM
RGRSGGQVRDEYRTDYDPG--------RGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVI
RGRSGGQVRDEYRTDYDPG--------RGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVI
RGRSGGQVRDEYRTDYDPDILLALSVRRGGYGKLVQQELEAQRQLVDYGTGSLGSFPPVM
RGRSGGQVRDEYRTDYDPD--------------------------ILF------------
5: 126-126
GSVIVP00018636001 2 0 U2 GTGAGCTA..ACAG
LOC_Os02g39890.1 2 0 U2 GTATTACC..ATAG
estExt_fgenesh1_kg.C_chr_40228 2 0 U2 GTAGTGCC..ATAG
GRMZM2G034804_T01 2 0 U2 GTAGTGCC..ATAG
GRMZM2G034804_T02 2 0 U2 GTAGTGCC..ATAG
GRMZM2G034804_T06 2 0 U2 GTAGTGCC..ATAG
estExt_Genewise1_v1.C_LG_VII0586 2 0 U2 GTGAGCAT..ACAG
Glyma12g33400.1 2 0 U2 GTGAGCAT..GCAG
Glyma13g37030.1 2 0 U2 GTGAAAAT..GCAG
estExt_fgenesh4_pm.C_640064 2 0 U2 GTGAGCTT..ACAG
chr3.CM0160.780.nd 2 0 U2 GTGAAGCT..GCAG
6: 137-137
LOC_Os02g39890.1 3 1 U12 ATATCCTT..TTAC
estExt_fgenesh1_kg.C_chr_40228 3 1 U12 ATATCCTT..AAAC
GRMZM2G034804_T01 3 1 U12 ATATCCTT..AAAC
GRMZM2G034804_T02 3 1 U12 ATATCCTT..AAAC
estExt_Genewise1_v1.C_LG_VII0586 3 1 U12 ATATCCTT..CTAC
Glyma12g33400.1 3 1 U12 ATATCCTT..ATAC
Glyma13g37030.1 3 1 U12 ATATCCTT..ATAC
7: 144-144
estExt_fgenesh4_pm.C_640064 3 0 U2 GTGTGTGT..TGAG
At~AT5G44200.1
Vv~GSVIVP00018636001
Os~LOC_Os02g39890.1
Sb~estExt_fgenesh1_kg.C_chr_40228
Zm~GRMZM2G034804_T01
Zm~GRMZM2G034804_T02
Zm~GRMZM2G034804_T06
Pt~estExt_Genewise1_v1.C_LG_VII0586
Gm~Glyma12g33400.1
Gm~Glyma13g37030.1
Pt~estExt_fgenesh4_pm.C_640064
Lj~chr3.CM0160.780.nd
PTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTDSDMR
------------------------------------------------------------
PPQ-YDRG--DRKRGYGDSYRNDR-DYQRKRYRNDER----SSQRAPDSEFKRDA---ID
PPP-YERG--ERKRGYGDSHRNDRGDYQRKRYRNDDRSAPEESKRAPDSDPA--------
PPP-YERS--ERKRGHGDSHRNDRGDYQRKRYRNDDRSAPEESKRAPDSDPAVLA---LF
PPP-YERS--ERKRGHGDSHRNDRGDYQRKRYRNDDRSAPEESKRAPDSDPA--------
------------------------------------------------------------
PPPHFGRR--GGGQNYGSSNRQGRDYLQRKRNREDDQQPRESSKRTSDHESRRNFDPDSR
PTS-YGRH--GGGHGHGGSHRHGR-DYYRKRHRDDDRHIHESSKRNSDHESRRNTDHESR
PTS-YGRHGGGGGHGHGGSHRHGR-DYYRKRHRDDERHTHESSKRTSDHESRRNTDHESR
PPPHYGRR--GGIHNHGGSLRQSGDYHHRKRHREDDRPPRESSKRTSDHESRRNFDPDSR
------------------------------------------------------------
8: 182-183
LOC_Os02g39890.1 4 1 U2 GTAAGTGC..GCAG
estExt_fgenesh1_kg.C_chr_40228 4 1 U2 GTAAGTTT..GCAG
GRMZM2G034804_T01 4 1 U2 GTAAGTTT..GCAG
GRMZM2G034804_T02 4 1 U2 GTAAGTTT..GCAG
estExt_Genewise1_v1.C_LG_VII0586 4 1 U2 GTAAGTGT..GCAG
Glyma12g33400.1 4 1 U2 GTAAGTGG..GCAG
Glyma13g37030.1 4 1 U2 GTAAGTGA..GTAG
estExt_fgenesh4_pm.C_640064 4 1 U2 GTGAGTTG..GCAG
9: 203-204
LOC_Os02g39890.1 5 1 U2 GTCGCACA..CCAG
estExt_fgenesh1_kg.C_chr_40228 5 1 U2 GTAACACA..CCAG
GRMZM2G034804_T01 5 1 U2 GTAAACAC..CCAG
GRMZM2G034804_T02 5 1 U2 GTAAACAC..CCAG
estExt_Genewise1_v1.C_LG_VII0586 5 1 U2 GTATTTTT..GCAG
Glyma12g33400.1 5 1 U2 GTAGTTTC..ATAG
Glyma13g37030.1 5 1 U2 GTAGTTTC..ATAG
estExt_fgenesh4_pm.C_640064 5 1 U2 GTATTTTT..GCAG
10: 231-231
estExt_fgenesh1_kg.C_chr_40228 6 0 U2 GTATTAGC..ACAG
GRMZM2G034804_T02 6 0 U2 GTATTAGC..ACAG
At~AT5G44200.1
Vv~GSVIVP00018636001
Os~LOC_Os02g39890.1
Sb~estExt_fgenesh1_kg.C_chr_40228
Zm~GRMZM2G034804_T01
Zm~GRMZM2G034804_T02
Zm~GRMZM2G034804_T06
Pt~estExt_Genewise1_v1.C_LG_VII0586
Gm~Glyma12g33400.1
Gm~Glyma13g37030.1
Pt~estExt_fgenesh4_pm.C_640064
Lj~chr3.CM0160.780.nd
PEKNPRFRESGDSDDDGED-DRKRRS
--------------------------
SEKNPRFREKGDSDEEDDDYDKRRRR
-EKNPRFREKGDSDEEEDDYDKRRRR
LEKNPRFREKGDSDEEEDDYDGKRRR
-EKNPRFREKGDSDEEEDDYDGKRRR
--------------------------
PEKNPRFRESTNSDDEEED-DRQQRP
PEKNPRFRESGDSDDDEED-DRKRRA
PEKNPRFRESGDSDEDEED-DRKRRA
PEKNPRFRESANSDDEEED-DKQQRT
--------------------------
11: 240-240
LOC_Os02g39890.1 6 0 U2 GTATTAGA..GCAG
GRMZM2G034804_T01 6 0 U2 GTTATGCC..ACAG
estExt_Genewise1_v1.C_LG_VII0586 6 0 U2 GTAATCTT..GCAG
Glyma12g33400.1 6 0 U2 GTATTCTC..GCAG
Glyma13g37030.1 6 0 U2 GTATTTTC..GCAG
estExt_fgenesh4_pm.C_640064 6 0 U2 GTAATCTT..ACAG


3' UTR introns