SRGD Gene ID 556 BLASTp at NCBI n/a n/a  
OrganismsGm ,At ,Sb ,Vv ,Os ,Zm ,Pp ,Lj ,Pt
Gene count13
Cintron count6
Cintron classesU2 ,im ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 --------DLGFLNRAPQMPKTASYRVKRYWPGKVPEYAEEAA------VDIRSAVVPV-
MSVQAGVSDVAISVREKLRGKIGQTKVKRYWPGKAPEWAEDVE-EE---ADVRPSRVSAA
MSVAAGVSDAAITVRDKLRGKIGQTKVKRYWPGKAPEWADDGE-DD---ADLRTANKVS-
MSVAAGVSDAAIAVRDKLRGKIGQTKVKRYWPGKAPEWADDVD-ED---VDLRTARVS--
MSVAAGVSDAAIAVRDKLRGKIGQTKVKRYWPGKAPEWADDAD-ED---TDLRTTR----
MSVTAGVSESAIAVREKLKGGIGQTKVRRYWPGKAPEWAEEAE-ED---DDVRMQKFSV-
MSVTAGVSESAIAVREKLKGGIGQTKVRRYWPGKAPEWAEEAE-ED---DDVRMQKFSV-
MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKVPEWADDEN-EDAAPADIRPSREAA-
MSVTAGVSDTVIAIRDKLRGKIGQTKVKRYWPGKVPEWADDENEEDAAPADIRPSREAA-
MSVTAGVSDTALAVRDKLRGKIGQTKVKRYWPGKAPEWADDAE-ED---GDIRMARVAS-
MSVTAGVSDTALAVRDKLRGKIGQTKVKRYWPGKAPEWADDAD-ED---GDIRMARAAA-
MSVTAGVSDTVIAIRDKLRGKIGQTKVKRYWPGKAPEWADDVD-ED---AHIGT------
------------------------------------------------------------
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 -----EEPIVP-K---------YDDRRLRHW--------------------------IEE
NREAQLEKAFL-LRDELDFPR-QDDPRLRRLAESRRD-KDEAVARHRQIRQAEIVSTREE
-----LDKAFP-KDEDGDAPPLKDDRRLRRLAQTRAENKEELRADHRRIRQAEIVSTVDE
-----LDKAFP-RDEDGDVPA-KDDRRLRRLAETRAENKEELRADHRRIRQAEIVSTAEE
-----VDKAFP-KDDDGDVPA-KDDRRLRRLAETRAENKEELRADHRRIRQAEIVSTAEE
-----LDRAFP-KNDDLGVAR-KDDPRLRRLAQTKVENRDEVRADHRRIRQAEIISTEEE
-----LDRAFP-KNDDLGVAR-KDDPRLRRLAQTKVENRDEVRADHRRIRQAEIISTEEE
-----LEKAFPRHQEDTAIVR-KDDRRLRRLAQSRIDNREEVRADHRRIRQAEIVSTIEE
-----LEKAFPRHEEDAAIVR-KDDRRLRRLAESRIDNREEVRADHRRIRQAEIVSTIEE
-----LEKAFPSRDDSDVVSR-KDDPRLRRLAETRIDNRDEMRADHRRIRQAEIISTEEE
-----LDKAFPIRDDSYDVAASKDDPRLRRLAESRIDNRDEVRADHRRIRQAEIISTEEE
-----TKKAFPSREEDVGIVK-KDDPRLRRLAERPIT----AGSDRPRLFQ---------
-----LSQ----------------------------------------------------
2: 65-65
GSVIVP00031419001 0 1 U2 GTGGAGCT..CTAG
3: 92-92
GSVIVP00031419001 1 1 U2 GTAGGATT..TGAG
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 DSRRLEFED---VDDDDALTERRIRLKEEWLRREQEQS---PAAEEE-----EEEEEEFE
EKVAQELAEAEEDEDDEAIEERRQRIKAKLLQRQREEEAALEAELEEE----DEEDEESE
ENERQEAEL-EEEDDEEAQEERRRRIRARQLLREQEEL--LPQEEE-PIEE-EEESEESE
ENERQEADA--DEEDEEAQEERRRRIRARQLLREQEEL--LPQEEEEPVEA-EESEEESE
ESERQDADI--DEEDEEAQEERRRRIRERQLLREQEEL--LPQEEEEPVED-EESEEESE
ESRNQENRD--EDDDEDALEERRRRIKEKNLRRAQEEAALLPLEEEDEIQEEEEEEEESE
ESRNQENRD--EDDDEDALEERRRRIKEKNLRRAQEEAALLPLEEEDEIQEEEEEEEESE
EARRQEWLE-FEEEDENALAERRRLIKEKLLQREQEEA--LPQEEEEEEEE-EEEEEESE
EARRQEWLE-FEEEDENALAERRRLIKEKLLQREQEEA--LPQEEEEEEEE-EEEEEESE
ETRKQEWAD-MEEDDEDALEERRRRIKEKLRQREREEAALLPVEEEEEEDEVEEEEEESE
EMRRQEWAD-MEEEDEDALEERRRRIKEKLRHREQEEAVLLPIEEEEEVE--EEEEEESE
------------------LLRRRIRGRKVWIWKKRMRM--------------HWRSEGGG
------------------------------------------------------------
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 YETDSSDDTDKVGVVKSVFVPKSERHTIAERERLEAEQRALEEVRIRRLEERRLETKQQI
YETDSEEEFGGIAMIKPVFVPKSERDTIAEREKLEAEEEAMKDSLKKKLEERKIETK-QL
YETDSEDEQTGMAMVKPVFIPKSQRDTIAERERLEEEERQLEELVKKRLEARKIETR-QI
YETDSEDEQMGMAMVKPVFIPKSQRDTIAERERLEEEERQLEELVKKRLEARKIETR-QI
YETDSEDEQMGMAMVKPVFIPKSQRDTIAERERLEEEERQLEELVKKRLEARKIETR-QI
YETDSEDDMPGIALIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKIETK-QI
YETDSEDDMPGIALIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKIETK-QI
YETDSDEEYTGVAMVKPVFVPKSERDTIAERERLEAEELALEDKRKRRLEERRIETK-QI
YETDSDEEYTGVAMVKPVFVPKSERDTIAERERLEAEELAFEEKRKRRLEERRIETK-QI
YETDSEEEMTGMAMVKPVFVPKSERDTIAERERLEAEERALEDKVRKKLEERKVETK-QI
YETDSEEEMTGMAMVKPVFVPKSERDTIAERERLEAEEQALEEKVRRKLEQRKVETK-QI
LGRDSEEELTGIAMVKPVFVPKSERDTVADRERLEAEERALEESVKRRLEERKVETK-QI
------------------------------------------------------------
4: 182-182
GSVIVP00031419001 2 1 U2 GTTGCTGC..ACAG
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 LVQEIHK----------ANINTDEEEEDDDLNEAEEYEAWKVREIGRIKR---VREAILK
VVEAIKNEEEIEKN-REAEGDGGEVDTDDETNEAEEYEAWKAREISRIKRDRDARDKLLK
VVEEIRKEEHIEKT-LNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLK
VVEEIRKEEHIEKA-LNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDARLK
VVEEIRKEQHIEKA-LNEEANIEDVDTDDELNEAEEYEAWKNREIARIKRDREERDARLK
VVEEVRKDEEIRKNILLEEANIGDVETDDELNEAEEYEVWKTREIGRIKRERDAREAMLR
VVEEVRKDEEIRKNILLEEANIGDVETDDELNEAEEYEVWKTREIGRIKRERDAREAMLR
VVEEIRKDEEIQKN-LEMEANIADVDTDDEVNEAEEYEAWKVREIGRIKRDREDREAMLK
VVEEIRKDEEIQKN-LEMEANIADVDTDDEVNEADEYEAWKVREIGRIKRDREDREAMLK
LVEEIKKEEMIQKN-LEMEANIADVDTDDEMNEAEEYEAWKVREIARIKRDREDREAMVK
LVEEIQKEELIQKN-LETEANIADVDTDDEINEAEEYEAWKVREIARIKRDREAREAMLK
VVEKIREDEEILKN-LEVEANAADVDTDDEVNEVEEYEAWKVREIARIKRDREAREAMLK
---------------------------------------------------RGGREAMLR
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 EKQETERLRNMSEEDRIREWQIRNKK------KKKWRFMQRYYHCGAFFQDQLDT-----
EREEVEKLRNMTEEER-REWERKNPKPLPL-NKKKWKFMQKYYHKGAFYQTEADDRDG-A
EKEEIEKVRNMTEEER-REWERKNPKPLRE-NKQKWKFMQKYYHKGAFFQEGADDVIQSA
EKEEIEKVRNMTEEER-REWERKNPKPLRQ-TKQKWKFMQKYYHKGAFFQEGADDVIQSA
EKEEIEKVRNMTEEER-REWERKNPKPLRQTTKQKWKFMQKYYHKGAFFQEGADDVIQSA
EREEIEKLRNMTEQER-RDWERKNPKPSSAQPKKKWNFMQKYYHKGAFFQADPDDEAGSA
EREEIEKLRNMTEQER-RDWERKNPKPSSAQPKKKWNFMQKYYHKGAFFQADPDDEAGSA
EKEEIEKVRNMTEEER-REWERRNPKPAPP-PKQKWRFMQKYYHKGAFFQNESDDRAATV
EKEEIEKVRNMTEEER-REWERRNPKPAPP-PKQKWRFMQKYYHKGAFFQNESDDRAATV
EREEIERVRNMTEEER-REWERKNPKPAAP-PKQKWRFMQKYYHKGAFFQDEPDDRAATV
EREEIERVRNMTEEER-REWERKNPKPAPP-SKQKWRFMQKYYHKGAFFQDQPDDRAATA
EKEEVEKVRNMTEEER-REWERKNPKPASA-PKQKWRFMQKYYHKGAFFQSEVDDVAATA
EKEEIDKLRNMTEEER-REWERKNPKQTQS-SKQKWRFMLKYYHKGAFFQSDPDDPAATV
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 ----IMLRDFSAPTGQDKMDKTILPSVMQVKRFGLRGRSKWTHLINEDTTHHRTNPSWTC
GGEEIFRRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVAEDTTDW--NNPWTY
GKDDIYARDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NAPWAT
GKEDIYTRDFSEPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NAPWST
GKDDIYTRDFSEPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NAPWST
GTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--SNPWTS
GTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--SNPWTS
GSDGIFARDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NNPWTY
GSDGIFARDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NNPWTY
GSDGIFKRDFSAPTGEDNMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NNPWTY
GTDDIFRRDFSSPTGEDRMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NNPWTF
GSDGIYARDFSAPTGEDKMNKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--NNPWTY
RSDNIFSRDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW--N-----
5: 415-415
estExt_fgenesh1_pg.C_140117 0 2 U2 GTATGTCC..GCAG
LOC_Os02g17870.1 0 2 U2 GTATGTAC..TCAG
estExt_Genewise1.C_chr_50594 1 2 U2 GTAAGTAC..TCAG
AT4G08580.1 1 2 U2 GTAAGTTC..GCAG
AT5G17900.1 1 2 U2 GTAAGTTT..GCAG
Glyma05g28420.1 1 2 U2 GTAAGTTC..GCAG
Glyma08g11430.1 1 2 U2 GTAAGTTC..ACAG
fgenesh4_pm.C_LG_XIX000122 0 2 U2 GTAAGTCC..GCAG
estExt_fgenesh4_pm.C_LG_XIII0270 0 2 U2 GTAAGTCC..GCAG
GSVIVP00031419001 3 2 U2 GTGAGTTC..GCAG
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 NHLHPLQS------------IAKRRKLMS-------------------------------
N--DPLRAKYNQKMAGMNRPIAKPAGNKK-------------------------------
N--GPLRAKYNAKMAGMNAPIAKPKGSKK-------------------------------
N--GPLRAKYNAKMAGMNAPIAKPKGTAQPQYLTHCRATMRMRPVLVLGNMKSKSHPPPL
N--GPLRAKYNAKMAGMNAPIAKPKGSKK-------------------------------
N--DPLREKYNKKMAGMDAPIAKPKGSKK-------------------------------
N--DPLREKYNKKMAGMDAPIAKPKGSKK-------------------------------
N--DPLRAKYNDKMAAMNAPIVKPKGSRK-------------------------------
N--DPLRAKYNDKMAAMNAPIVKPKGSKK-------------------------------
N--DPLRAKYNAKMAGMNATIAKPKGSKK-------------------------------
N--DPLRAKYNAKMAGMSAAIDKPKGSKK-------------------------------
N--DPLRAKYNAKMAGMNVPIAKPKGSKK-------------------------------
------------------------------------------------------------
Lj~LjSGA_009527.1
Pp~estExt_fgenesh1_pg.C_140117
Os~LOC_Os02g17870.1
Zm~AC217271.3_FGP002
Sb~estExt_Genewise1.C_chr_50594
At~AT4G08580.1
At~AT5G17900.1
Gm~Glyma05g28420.1
Gm~Glyma08g11430.1
Pt~fgenesh4_pm.C_LG_XIX000122
Pt~estExt_fgenesh4_pm.C_LG_XIII0270
Vv~GSVIVP00031419001
Lj~LjSGA_077056.1
 ------------------------------------------
--------------------------------LKDWENS---
--------------------------------MKDWDTKQDD
GARATELPDGYAQATIKMNMLASCMMKIESYGVDQWSITQEI
--------------------------------LKDWDTK---
--------------------------------MKDWET----
--------------------------------MKDWET----
--------------------------------LKDWESR---
--------------------------------LKDWESRESG
--------------------------------LKDWESR---
--------------------------------LKDWESR---
--------------------------------LKDWDSR---
------------------------------------------


3' UTR introns