SRGD Gene ID 550 BLASTp at NCBI n/a n/a  
OrganismsGm ,At ,Pt ,Vv ,Os ,Mt ,Zm ,Pp ,Lj ,Sb
Gene count13
Cintron count11
Cintron classesU2 ,im ,absent ,em
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Mt~AC148406_44.2
Pp~estExt_fgenesh1_pg.C_1540070
At~AT1G65700.1
Lj~LjT03D12.50.nd
Pt~grail3.0053017202
Vv~GSVIVP00013856001
Gm~Glyma08g18410.1
Gm~Glyma15g40590.1
Gm~Glyma15g40590.2
Gm~Glyma08g18410.2
Os~LOC_Os05g51650.1
Zm~GRMZM2G320379_T01
Sb~estExt_fgenesh1_kg.C_chr_90290
-----------------------------------------MCLSEVINVYIY-------
-----------------------------------------MATDTGLESLID-------
-----------------------------------------MAATTGLETLVD-------
PFPGQRPSTLRRATAVRRRYHTLSGDSYLLRRHFSSFQLREMSTGPGLESLVDRKQSVLY
-----------------------------------------MSIGTGLESLVD-------
-----------------------------------------MSTGPGLESLVD-------
-----------------------------------------MSAGPGLESLVD-------
-----------------------------------------MSAGPGLESLVD-------
-----------------------------------------MSAGPGLESLVD-------
-----------------------------------------MSAGPGLESLVD-------
----------------------------------------MASAGPGLESLVD-------
----------------------------------------MASGGPALEPLVD-------
----------------------------------------MASGGPALEPLVD-------
2: 41-41
AT1G65700.1 0 0 U2 ..
3: 52-52
estExt_fgenesh1_pg.C_1540070 0 1 U2 GTATGTGC..GCAG
grail3.0053017202 1 1 U2 GTAAGAAA..GCAG
GSVIVP00013856001 1 1 U2 GTATGTAT..GCAG
Glyma08g18410.1 1 1 U2 GTAAGACA..ACAG
Glyma15g40590.1 1 1 U2 GTAAGTCA..ACAG
Glyma15g40590.2 1 1 U2 GTAAGTCA..ACAG
Glyma08g18410.2 1 1 U2 GTAAGACA..TCAG
LOC_Os05g51650.1 0 1 U2 GTGAGTTC..CCAG
estExt_fgenesh1_kg.C_chr_90290 0 1 U2 GTGAGTAC..GCAG
Mt~AC148406_44.2
Pp~estExt_fgenesh1_pg.C_1540070
At~AT1G65700.1
Lj~LjT03D12.50.nd
Pt~grail3.0053017202
Vv~GSVIVP00013856001
Gm~Glyma08g18410.1
Gm~Glyma15g40590.1
Gm~Glyma15g40590.2
Gm~Glyma08g18410.2
Os~LOC_Os05g51650.1
Zm~GRMZM2G320379_T01
Sb~estExt_fgenesh1_kg.C_chr_90290
----------------------QSFNYSGRDNFNDGRNIVGVLKGFDQATNIILVESHER
----------------------QTISVIT----NDGRNIVGVLKGFDQATNLILDESHER
----------------------QIISVIT----NDGRNIVGVLKGFDQATNIILDESHER
FLFLFDATHIHTCAHTYFTDVSKQISVIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QTISIIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QTISVIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QTISVIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QTISVIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QTISVIT----NDGRNIVGVLKGFDQATNIILDESHER
--------------------------LIT----NDGRNIVGVLKGFDQATNIILDESHER
----------------------QIISVIT----NDGRNIVGTLRGFDQATNIILDESHER
----------------------QVISVIT----NDGRNIVGTLRGFDQATNIILDESHER
----------------------QVISVIT----NDGRNIVGTLRGFDQATNIILDESHER
4: 99-99
AC148406_44.2 0 0 U2 GTAAGCCT..TAAG
estExt_fgenesh1_pg.C_1540070 1 0 U2 GTATTCAT..ACAG
grail3.0053017202 2 0 U2 GTGCGTTA..TTAG
GSVIVP00013856001 2 0 U2 GTATGTTA..TTAG
Glyma08g18410.1 2 0 U2 GTAAGCTT..TCAG
Glyma15g40590.1 2 0 U2 GTAAGCTT..TCAG
Glyma15g40590.2 2 0 U2 GTAAGCTT..TCAG
Glyma08g18410.2 2 0 U2 GTAAGCTT..TCAG
LOC_Os05g51650.1 1 0 U2 GTGAGCCC..TCAG
estExt_fgenesh1_kg.C_chr_90290 1 0 U2 GTAAGCAA..GCAG
Mt~AC148406_44.2
Pp~estExt_fgenesh1_pg.C_1540070
At~AT1G65700.1
Lj~LjT03D12.50.nd
Pt~grail3.0053017202
Vv~GSVIVP00013856001
Gm~Glyma08g18410.1
Gm~Glyma15g40590.1
Gm~Glyma15g40590.2
Gm~Glyma08g18410.2
Os~LOC_Os05g51650.1
Zm~GRMZM2G320379_T01
Sb~estExt_fgenesh1_kg.C_chr_90290
---TR------------------------------------------LFYQELLLANWM-
VYSTK------------------------------------------AGVEQVVLGLHII
VFSTK------------------------------------------EGVQQHVLGLYII
VFSTK------------------------------------------EGVQQIVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTK------------------------------------------EGVQQLVLGLYII
VYSTRYVLVNCDLLPGLLSNALIGSLVQNSAISNKFLSWCLKVSCQHEGVQQLVLGLYII
VYSRK------------------------------------------EGVQQLVLGLYII
VYSRK------------------------------------------EGVQQLVLGLYII
5: 124-124
estExt_fgenesh1_pg.C_1540070 2 0 U2 GTATATCC..ACAG
grail3.0053017202 3 0 U2 GTTTGTAT..GCAG
GSVIVP00013856001 3 0 U2 GTTTGTGT..ACAG
Glyma08g18410.1 3 0 U2 GTATGATG..ACAG
Glyma15g40590.1 3 0 U2 GTATGATG..ACAG
Glyma15g40590.2 3 0 U2 GTATGATG..ACAG
Glyma08g18410.2 3 0 U2 GTATGATG..ACAG
LOC_Os05g51650.1 2 0 U2 GTAGGGTT..CCAG
estExt_fgenesh1_kg.C_chr_90290 2 0 U2 GTTACTTT..GCAG
6: 166-166
LOC_Os05g51650.1 3 0 U2 GTATTACA..GCAG
7: 170-170
AC148406_44.2 1 1 U2 GTATGAAT..GCAG
Mt~AC148406_44.2
Pp~estExt_fgenesh1_pg.C_1540070
At~AT1G65700.1
Lj~LjT03D12.50.nd
Pt~grail3.0053017202
Vv~GSVIVP00013856001
Gm~Glyma08g18410.1
Gm~Glyma15g40590.1
Gm~Glyma15g40590.2
Gm~Glyma08g18410.2
Os~LOC_Os05g51650.1
Zm~GRMZM2G320379_T01
Sb~estExt_fgenesh1_kg.C_chr_90290
----------------------KI----------
RGDNIGVVGELDEELDSNLDLSALRAHPLKAVQH
RGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
RGDNISVVGELDLDLDRSLDMTKLRAHPLKPVI-
RGDNIGVVGELDEELDAHLDLSSLRAHPLKPVIH
RGDNISIVGELDEELDSSLDLSKLRAHPLKPVTH
RGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH
RGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH
RGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH
RGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH
RGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH
RGDNISVVGEVDEELDSRLDMSKLRAHPLKPVIH
RGDNISVVGEVDEDLDSRLDMSKLRAHPLKPVIH
8: 183-183
estExt_fgenesh1_pg.C_1540070 3 2 U2 GTAAGTGC..ATAG
grail3.0053017202 4 2 U2 GTAAATCC..TCAG
GSVIVP00013856001 4 2 U2 GTAATTGC..GCAG
Glyma08g18410.1 4 2 U2 GTATGCCC..GCAG
Glyma15g40590.1 4 2 U2 GTATGTCC..GCAG
Glyma15g40590.2 4 2 U2 GTATGTCC..GCAG
Glyma08g18410.2 4 2 U2 GTATGCCC..GCAG
LOC_Os05g51650.1 4 2 U2 GTAAGCTA..ACAG
estExt_fgenesh1_kg.C_chr_90290 3 2 U2 GTAAGCTA..GCAG


3' UTR introns