SRGD Gene ID 548 BLASTp at NCBI n/a n/a  
OrganismsPt ,Gm ,At ,Os ,Sb ,Pp ,Zm ,Mt
Gene count13
Cintron count4
Cintron classesU2 ,im ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Mt~AC137667_47.2
Pp~estExt_Genewise1.C_1620125
Pp~estExt_fgenesh1_pg.C_170228
Pt~estExt_fgenesh4_pm.C_LG_VIII0306
Gm~Glyma18g46370.1
Gm~Glyma09g39830.1
Sb~e_gw1.4.13539.1
Os~LOC_Os02g30624.1
Os~LOC_Os02g30624.2
Os~LOC_Os04g31950.1
Zm~GRMZM2G159675_T02
At~AT3G59810.1
At~AT2G43810.1
MLLAALQSQSS---------RTERTS-----------------------GILACLDGYMN
MSGDAASAQPT---------GSAKTPNDFLKSIKGRPVVVKLNSGVDYRGILACLDGYMN
MTGDSVSAQPT---------GSAKTPADFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMN
--MSTGGEKGS---------ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
--MSGTEKAGS---------GTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
--MSGTEKAGS---------GTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
MSSGGGGSDRP----ASGAGGTVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
-MSSGGEKSGSGGGGGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
-MSSGGEKSGSGGGGGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
-MSTGGGADKS----GGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
MSSGGADKPGS-------GGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMN
--MSGVEEKVS---------GTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMN
--MSGVGEKAS---------GTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMN
2: 48-48
estExt_Genewise1.C_1620125 0 1 U2 GTATGCCT..TTAG
estExt_fgenesh1_pg.C_170228 0 1 U2 GTATGCTT..GTAG
estExt_fgenesh4_pm.C_LG_VIII0306 1 1 U2 GTCACTTT..GCAG
Glyma18g46370.1 1 2 U2 TTCCTCTC..CAGG
Glyma09g39830.1 1 1 U2 GTTCCTTT..GCAG
e_gw1.4.13539.1 0 1 U2 GTCACCTC..TCAG
LOC_Os02g30624.1 0 1 U2 GTAACCCC..CCAG
LOC_Os02g30624.2 0 1 U2 GTAACCCC..CCAG
LOC_Os04g31950.1 0 1 U2 GTGAGGGT..TCAG
GRMZM2G159675_T02 0 1 U2 GTATTAAT..CCAG
AT3G59810.1 1 1 U2 GTGCCTCT..ACAG
AT2G43810.1 2 1 U2 GTCTGTCT..GCAG
Mt~AC137667_47.2
Pp~estExt_Genewise1.C_1620125
Pp~estExt_fgenesh1_pg.C_170228
Pt~estExt_fgenesh4_pm.C_LG_VIII0306
Gm~Glyma18g46370.1
Gm~Glyma09g39830.1
Sb~e_gw1.4.13539.1
Os~LOC_Os02g30624.1
Os~LOC_Os02g30624.2
Os~LOC_Os04g31950.1
Zm~GRMZM2G159675_T02
At~AT3G59810.1
At~AT2G43810.1
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTTKMTLGD--
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTTKRTLGD--
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNGLYISTSKRTLAEGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA
IAMEQTEEYVNGQLKNKYGDAFMRGNNVLYISTSKRTLTDS-
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDDA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTTKRTLADGA
IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADGA
IAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDGA
3: 86-86
estExt_Genewise1.C_1620125 1 1 U2 GTGAGAGC..ACAG
estExt_fgenesh1_pg.C_170228 1 1 U2 GTGAGAAC..GCAG
estExt_fgenesh4_pm.C_LG_VIII0306 2 1 U2 GTAACAAC..GCAG
Glyma18g46370.1 2 2 U2 TACTAATG..CAGT
Glyma09g39830.1 2 1 U2 GTACTGAT..GCAG
e_gw1.4.13539.1 1 1 U2 GTACGTAT..GCAG
LOC_Os02g30624.1 1 1 U2 GTATGCGT..GCAG
LOC_Os02g30624.2 1 1 U2 GTATGCGT..GCAG
LOC_Os04g31950.1 1 1 U2 GTATGTCC..GCAG
GRMZM2G159675_T02 1 1 U2 GTACGACC..GCAG
AT3G59810.1 2 1 U2 GTAACTAA..GCAG
AT2G43810.1 3 1 U2 GTAAAAAC..ACAG


3' UTR introns