SRGD Gene ID 540 BLASTp at NCBI n/a n/a  
OrganismsAt ,Mt ,Zm ,Os ,Sb ,Gm ,Pt ,Pp ,Lj
Gene count13
Cintron count9
Cintron classesU2 ,em ,im ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.219.49.1
Pp~estExt_Genewise1.C_460191
At~AT4G30220.1
Pt~eugene3.00180816
Mt~AC135801_11.2
Lj~chr5.CM0852.120.nd
Gm~Glyma20g21250.1
Gm~Glyma17g07060.1
Sb~e_gw1.3.1801.1
Sb~estExt_Genewise1Plus.C_chr_41141
Zm~GRMZM2G058252_T01
Zm~GRMZM2G168252_T01
Os~LOC_Os11g43620.1
 -------TVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGA
-----MATIPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGA
--------------------------------MEYKGFLASVDSYMNLQLGNTEEYIDGQ
-----MATVPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQ
-----MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGN
-------TIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQ
-----MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQ
-----MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQ
MDSCFVQTVPVNPKPFLNNLTGKTVIVKLKWGMEYKGYLTSVDSYMNLQLANTEEYIDGQ
-----MATVPVNPKPFLNNLTGKFVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQ
-----MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQ
-----MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQ
-----MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQ
2: 5-6
estExt_Genewise1.C_460191 0 0 U2 GTAAGACG..GCAG
eugene3.00180816 0 0 U2 GTGAGTTT..GCAG
AC135801_11.2 0 0 U2 ..
Glyma20g21250.1 0 0 U2 GTGAGTAC..GCAG
Glyma17g07060.1 0 0 U2 GTGAGTAC..GCAG
estExt_Genewise1Plus.C_chr_41141 0 0 U2 GTAAGCTT..GCAG
GRMZM2G058252_T01 0 0 U2 GTAAGCTA..GCAG
GRMZM2G168252_T01 0 0 U2 GTACGCTC..GCAG
LOC_Os11g43620.1 0 0 U2 GTAATACC..GCAG
3: 32-32
AT4G30220.1 0 0 U2 ..
4: 35-35
e_gw1.219.49.1 0 1 U2 GTGCTCTG..GCAG
estExt_Genewise1.C_460191 1 1 U2 GTGCTCTG..ACAG
eugene3.00180816 1 1 U2 GTCAAGAT..TCAG
Glyma20g21250.1 1 1 U2 GTATGACT..TCAG
Glyma17g07060.1 1 1 U2 GTATGAGT..TCAG
e_gw1.3.1801.1 0 1 U2 GTAAATTT..CCAG
estExt_Genewise1Plus.C_chr_41141 1 1 U2 GTAATTTA..CCAG
GRMZM2G058252_T01 1 1 U2 GTAAGTTA..CCAG
GRMZM2G168252_T01 1 1 U2 GTAATTTA..CCAG
LOC_Os11g43620.1 1 1 U2 GTAATCTA..TAAG
5: 48-48
e_gw1.219.49.1 1 0 U2 GTTAGTAT..ACAG
estExt_Genewise1.C_460191 2 0 U2 GTAAGTAT..CCAG
eugene3.00180816 2 0 U2 GTACTGTC..ACAG
Glyma20g21250.1 2 0 U2 GTTATATA..GTAG
Glyma17g07060.1 2 0 U2 GTATATAT..GTAG
e_gw1.3.1801.1 1 0 U2 GTACTACT..GCAG
estExt_Genewise1Plus.C_chr_41141 2 0 U2 GTACTAAT..GCAG
GRMZM2G058252_T01 2 0 U2 GTACTAAT..GCAG
GRMZM2G168252_T01 2 0 U2 GTACTAAT..GCAG
LOC_Os11g43620.1 2 0 U2 GTATTGTT..TCAG
Pp~e_gw1.219.49.1
Pp~estExt_Genewise1.C_460191
At~AT4G30220.1
Pt~eugene3.00180816
Mt~AC135801_11.2
Lj~chr5.CM0852.120.nd
Gm~Glyma20g21250.1
Gm~Glyma17g07060.1
Sb~e_gw1.3.1801.1
Sb~estExt_Genewise1Plus.C_chr_41141
Zm~GRMZM2G058252_T01
Zm~GRMZM2G168252_T01
Os~LOC_Os11g43620.1
 FTGNLGEVLIRCNNVMYLRGVPEDEDAAEDDE-
FTGNLGEVLIRCNNVMYLRGVPEDEDAAEDDD-
LTGNLGEILIRCNNVLYVRGVPEDEELEDADQD
FTGNLGEILIRCNNVLYLRGVPEDEDIEDAERD
FTGNLGEILIRCNNVLYMRGVPEDEEIEDAADD
FTGNLGEILIRCNNVLYLRGVPEDEEIEDAPE-
FTGNLGEILIRCNNVLYLRGVPEDEEIEDVAED
FTGNLGEILIRCNNVLYLRGVPEDEEIEDAAED
FSGNLGEILIRCNNVLYLRGVPEDTEIEDAE--
FSGNLGEILIRCNNVLYLRGVPEDAEIQDAE--
FSGNLGEILIRCNNVMYLRGVPEDAEIEDAE--
FSGNLGEILIRCNNVMYLRGVPEDAEIEDAE--
FSGNLGEILIRCNNVLYLRGVPEDAEIEDAE--
6: 69-69
e_gw1.219.49.1 2 2 U2 GTCCGTCT..GTAG
estExt_Genewise1.C_460191 3 2 U2 GTTCGTCT..GCAG
eugene3.00180816 3 2 U2 GTAAGTTG..GCAG
chr5.CM0852.120.nd 0 2 U2 GTAACTTG..ATAG
Glyma20g21250.1 3 2 U2 GTAAATTC..CTAG
Glyma17g07060.1 3 2 U2 GTATACTC..CTAG
e_gw1.3.1801.1 2 2 U2 GTAATGAT..ACAG
estExt_Genewise1Plus.C_chr_41141 3 2 U2 GTAATGTT..ACAG
GRMZM2G058252_T01 3 2 U2 GTAATGTT..ACAG
GRMZM2G168252_T01 3 2 U2 GTAATGTT..ACAG
LOC_Os11g43620.1 3 2 U2 GTAACTCG..ACAG