SRGD Gene ID 539 BLASTp at NCBI n/a n/a  
OrganismsSb ,Gm ,Pp ,Pt ,Zm ,Vv ,At ,Os
Gene count13
Cintron count5
Cintron classesU2 ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_Genewise1.C_280109
Zm~GRMZM2G049013_T02
Zm~GRMZM2G014300_T01
Zm~GRMZM2G014300_T02
Zm~GRMZM2G049013_T01
Os~LOC_Os05g32310.1
Sb~estExt_Genewise1.C_chr_95696
Pt~eugene3.00090932
Pt~grail3.0053017102
Vv~GSVIVP00020489001
At~AT5G48870.1
Gm~Glyma05g25800.1
Gm~Glyma05g25800.2
 -------------------------------------------------MAHNNPSHLMP
MEGAHPTQRRSKIPNLCAAAVLCRSSPAVSRLHRRVPIPTAPTATRGVDMSQNNPSQLLP
-------------------------------------------------MSQNNPSQLLP
-------------------------------------------------MSQNNPSQLLP
-------------------------------------------------MSQNNPSQLLP
-------------------------------------------------MSQNNPSQLLP
-------------------------------------------------MSQNNPSQLLP
-------------------------------------------------MANTNPSQLLP
-------------------------------------------------MANTNPSQLLP
--------------------------------------------------MSTNPSQLLP
--------------------------------------------------MANNPSQLLP
--------------------------------------------------MANNPSQLLP
--------------------------------------------------MANNPSQLLP
Pp~estExt_Genewise1.C_280109
Zm~GRMZM2G049013_T02
Zm~GRMZM2G014300_T01
Zm~GRMZM2G014300_T02
Zm~GRMZM2G049013_T01
Os~LOC_Os05g32310.1
Sb~estExt_Genewise1.C_chr_95696
Pt~eugene3.00090932
Pt~grail3.0053017102
Vv~GSVIVP00020489001
At~AT5G48870.1
Gm~Glyma05g25800.1
Gm~Glyma05g25800.2
 SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLEQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILL
SELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILL
2: 60-60
estExt_Genewise1.C_280109 0 1 U2 GTAACGAA..GCAG
GRMZM2G014300_T01 0 1 U2 GTGCGCGA..CCAG
GRMZM2G014300_T02 0 1 U2 GTGCGCGA..CCAG
LOC_Os05g32310.1 0 1 U2 GTGCGCGG..GCAG
estExt_Genewise1.C_chr_95696 1 1 U2 GTGCGCGA..CCAG
eugene3.00090932 0 1 U2 GTCAGCTC..ACAG
grail3.0053017102 0 1 U2 GTCAGCTA..ACAG
GSVIVP00020489001 0 1 U2 GTACCATT..GCAG
AT5G48870.1 0 1 U2 GTATGCAA..GCAG
Glyma05g25800.1 1 1 U2 GTTTCTGA..GCAG
Glyma05g25800.2 1 1 U2 GTTTCTGA..GCAG
3: 101-101
estExt_Genewise1.C_280109 1 2 U2 GTAAGATG..GCAG
GRMZM2G014300_T01 1 2 U2 GTATGTCT..GCAG
GRMZM2G014300_T02 1 2 U2 GTATGTCT..GCAG
LOC_Os05g32310.1 1 2 U2 GTATGTGA..ATAG
estExt_Genewise1.C_chr_95696 2 2 U2 GTATGTCG..GCAG
eugene3.00090932 1 2 U2 GTAAGTCA..GTAG
grail3.0053017102 1 2 U2 GTATGTAG..ACAG
GSVIVP00020489001 1 2 U2 GTAAACCC..GCAG
AT5G48870.1 1 2 U2 GTAAGTCT..GTAG
Glyma05g25800.1 2 2 U2 GTGAGTAA..ACAG
Glyma05g25800.2 2 2 U2 GTGAGTAA..ACAG
Pp~estExt_Genewise1.C_280109
Zm~GRMZM2G049013_T02
Zm~GRMZM2G014300_T01
Zm~GRMZM2G014300_T02
Zm~GRMZM2G049013_T01
Os~LOC_Os05g32310.1
Sb~estExt_Genewise1.C_chr_95696
Pt~eugene3.00090932
Pt~grail3.0053017102
Vv~GSVIVP00020489001
At~AT5G48870.1
Gm~Glyma05g25800.1
Gm~Glyma05g25800.2
 NGNNIAILVPGGGPE---
NGNNIAILVPGGSPPDV-
NGNNIAILVPGGSPPDV-
NGNNIAILVPGGSPPDV-
NGNNIAILVPGGSPPDV-
NGNNIAILVPGGSPPDVA
NGNNIAILVPGGSPPDV-
NGNNIAILVPGGSPDPE-
NGNNIAILVPGGSPDPE-
NGNNIAILVPGGSPDPE-
NGNNIAILVPGGSPEDGE
NGNNIAILVPGGSPESE-
NGNNIAILVPGGSPESE-
4: 126-126
estExt_Genewise1.C_280109 2 0 U2 GTAAGCTT..CCAG
GRMZM2G014300_T01 2 0 U2 GTAAGGAT..ACAG
GRMZM2G014300_T02 2 0 U2 GTAAGGAT..ACAG
LOC_Os05g32310.1 2 0 U2 GTGAGAAA..ACAG
estExt_Genewise1.C_chr_95696 3 0 U2 GTAAGTAT..ACAG
eugene3.00090932 2 0 U2 GTAAGTAT..ACAG
grail3.0053017102 2 0 U2 GTAAGTAA..ACAG
GSVIVP00020489001 2 0 U2 GTAAGTAA..GCAG
AT5G48870.1 2 0 U2 GTAAGTAA..GCAG
Glyma05g25800.1 3 0 U2 GTAAGTCA..GCAG
Glyma05g25800.2 3 0 U2 GTAAGTCA..GCAG


3' UTR introns