SRGD Gene ID 538 BLASTp at NCBI n/a n/a  
OrganismsAt ,Pp ,Lj ,Vv ,Sb ,Pt ,Os ,Gm ,Zm
Gene count13
Cintron count14
Cintron classesU2 ,im ,absent ,GC ,em
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
MVEAQRALLDELMGTARDLTAEERKGHCEMQWDDPLVCTCFLVNFCPHDLFVNTKSDLGP
-MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGP
-MDAQRALLDELMGTARDLTEEERKAHKEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGP
-MDAQRALLDELMGTARNLTEEEKKGHKELKWDDPDVCGPYMVRFCPHDLFVNTKSNLGP
-MDAQRALLDELMGTARNLTDEEKKGHKELKWDDPDVCGPYMVRFCPHDLFVNTKSNLGP
-MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGA
-MDLQRAMLDELMGADRNLTEEERKDYKEITWDSKEVCAYYMARFCPHDLFVNTKSDLGP
-MDLQRAMLDELMGADRNLTEEERKDYKEITWDSKEVCAYYMARFCPHDLFVNTKSDIGP
-MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGP
-MDAQRALLDELMGSARNLTEEERKGFKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGP
-MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGP
-MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGP
-MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGP
2: 1-1
AT5G51410.1 0 0 U2 ..
3: 14-14
e_gw1.22.82.1 0 1 U2 GTGCCAGA..GCAG
LOC_Os07g27300.1 0 1 U2 GTACACCC..GCAG
LOC_Os07g27300.2 0 1 U2 GTACACCC..GCAG
GRMZM2G177842_T01 0 1 U2 GTAAAGTA..GCAG
estExt_Genewise1.C_chr_22544 0 1 U2 GTAAGTAC..GCAG
estExt_fgenesh4_pg.C_LG_III0864 0 1 U2 GTAATTAA..AAAG
estExt_fgenesh4_pm.C_290170 0 1 U2 GTAATGAA..AAAG
chr3.CM0127.780.nd 0 1 U2 GTACCTTC..TCAG
Glyma09g35800.1 0 1 U2 GTATACAT..TCAG
Glyma09g35800.2 0 1 U2 GTATACAT..TCAG
Glyma12g01550.1 0 1 U2 GTACGTAT..TCAG
4: 57-57
e_gw1.22.82.1 1 1 U2 GTATGCTT..GCAG
LOC_Os07g27300.1 1 1 U2 GTATAATC..GCAG
LOC_Os07g27300.2 1 1 U2 GTATAATC..GCAG
GRMZM2G177842_T01 1 1 U2 GTATGGCC..GCAG
estExt_Genewise1.C_chr_22544 1 1 U2 GTACGGCC..GCAG
estExt_fgenesh4_pg.C_LG_III0864 1 1 U2 GTAAGTTA..CCAG
estExt_fgenesh4_pm.C_290170 1 1 U2 GTAAGTTA..CCAG
chr3.CM0127.780.nd 1 1 U2 GTGCGTTT..GCAG
Glyma09g35800.1 1 1 U2 GTGCGTTT..GCAG
Glyma09g35800.2 1 1 U2 GTGCGTTT..GCAG
Glyma12g01550.1 1 1 U2 GTGCGTTT..GCAG
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
CPKIHDPKLKESYQQSTRHDNYVPRFEAQLFQFCEKLVQDLDRKVRRGRERLAQDANTST
CMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDV--AV
CMKIHDLKLKESFESSPRRETHMRRFEAELAQQCEKLVIDLDRKIRRGRERLAQDV--AV
CLRIHDPKLKESFEKSPRHDTYMQRFEAELAQQCEKLVMDLDRKIRRGRERLAHDS--AV
CSRIHDLKLKESFEKSPRHDTYMRRFEAELAQQCEKLVMDLDRKIRRGRERLAHDS--AV
CSRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVP
CDRVHDPKLKESFEKSPSHDAYLAKFEAELALRCEKLVMELDRRVRRGRERLAQGDEPVA
CDRVHDPKLKESFEKSPRHDAYLAKFEAELAQRCEKLVMELDRRVRRGRERLAQGDEPMP
CPRIHDQKLKESFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAP
CPRIHDQKLKESFEKSPRHDAFVPKFEAELAQFCEKLVMDLDRKVRRGRERLSQEVEPPP
CPRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPAP
CPRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPAP
CPRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPTP
5: 70-70
e_gw1.22.82.1 2 2 U2 GTGACTAC..GCAG
LOC_Os07g27300.1 2 2 U2 GTAAGGCC..GCAG
LOC_Os07g27300.2 2 2 U2 GTAAGGCC..GCAG
GRMZM2G177842_T01 2 2 U2 GTGATACC..GCAG
estExt_Genewise1.C_chr_22544 2 2 U2 GTGATACT..GCAG
estExt_fgenesh4_pg.C_LG_III0864 2 2 U2 GTAGGTCT..TTAG
estExt_fgenesh4_pm.C_290170 2 2 U2 GTAGTTGT..TAAG
chr3.CM0127.780.nd 2 2 U2 GTGAACAA..TCAG
Glyma09g35800.1 2 2 U2 GTGAACAA..TCAG
Glyma09g35800.2 2 2 U2 GTGAACAA..TCAG
Glyma12g01550.1 2 2 U2 GTAAACAA..TCAG
6: 96-96
e_gw1.22.82.1 3 0 U2 GTTGGCAT..CCAG
LOC_Os07g27300.1 3 0 U2 GTAAGTTG..GCAG
LOC_Os07g27300.2 3 0 U2 GTAAGTTG..GCAG
GRMZM2G177842_T01 3 0 U2 GTGAGTCA..GCAG
estExt_Genewise1.C_chr_22544 3 0 U2 GTGAGTCA..GTAG
estExt_fgenesh4_pg.C_LG_III0864 3 0 U2 GTAGGTCT..ATAG
estExt_fgenesh4_pm.C_290170 3 0 U2 GTAGGTCT..GCAG
chr3.CM0127.780.nd 3 0 U2 GTAGGTCA..ATAG
Glyma09g35800.1 3 0 U2 GTAGGTCA..CCAG
Glyma09g35800.2 3 0 U2 GTAGGTCA..CCAG
Glyma12g01550.1 3 0 U2 GTAGGTCA..CCAG
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
MLMPISTEKSDLLVNIEESIKKLLEKIEVFGEVGQVDEAEALMKKVDMLNMEKAILTQQI
PP-PVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALT-NQ
PP-PVIGKTSEQLSIIEEKVKKLLEQIEELGEAGKVDEAEALMRKVELLNAEKTALT-NQ
PM-PIPGKIAEQLSAREEQVKKLLEQIEELGEAGKVDEAEALMKRVDILNAEKTALS-NQ
PM-PIPGKIAEQLSVREEQVKKLLEQIEELGEAGKVDEAEALMRRVDILNAEKTALA-NQ
PP-SLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLL-QR
PP-PLSADKSERLSVVEEKIKNLLVQVEALGEVGKVDEAQALMKKVDELNAEKALI--QS
PP-PLSADKSERLSVVEEKIKNLLVQVEALGEVGKVDEAQALMKKVDELNAEKALI--QC
PA-PLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQP
PP-PLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVDTLNTEKTALT-QP
PP-PLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QP
PP-PLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QP
PP-PLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QP
7: 164-164
e_gw1.22.82.1 4 0 U2 GTCTGTTT..GCAG
LOC_Os07g27300.1 4 0 U2 GTACTGTC..GCAG
LOC_Os07g27300.2 4 0 U2 GTACTGTC..GCAG
GRMZM2G177842_T01 4 0 U2 GTACCGAC..ACAG
estExt_Genewise1.C_chr_22544 4 0 U2 GTACTGAT..GCAG
estExt_fgenesh4_pg.C_LG_III0864 4 0 U2 GTGCTATG..ACAG
estExt_fgenesh4_pm.C_290170 4 0 U2 GTGTTCTT..ACAG
chr3.CM0127.780.nd 4 0 U2 GTAGTGAA..GCAG
Glyma09g35800.1 4 0 U2 GTGCTGAA..ACAG
Glyma09g35800.2 4 0 U2 GTGCTGAA..ACAG
Glyma12g01550.1 4 0 U2 GTGCTGAA..ACAG
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
TNERGLILSQEKKMALCETCGSFLVANDATERTHSHMTGKQHVGYGLVRHYLLHYQATMP
ADNKVAMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFLAEHKAAKE
ADNKVAMLPQEKKMELCEICGSFLVADDVLERTQSHVTGKQHIGYGLVRDFLAEHKAAKE
ADSKVAML--EKKMELCETCGSFLVADDALERTQSHVTGKQHIGYGMVRDFLVEYKAAIE
ADNKVAML--EKKMELCETCGSFLVSDDALERTQSHVTGKQHIGYGMVRDFLVEYKAAKE
PTDKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKD
QNDKVLVVPQEKKMALCEICGSFLVANDAAERTQSHVTGKQHIGYGMVRDYITEYKEAKE
QNDKVLVVPQEKKMALCEICGSFLVANDVAERTQSHITGKQHIGYGMVRDYITEYKEAKE
QNDKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKE
QNEK-LMQAQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKE
QNDKLLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAKE
QNDKLLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAKE
QNDKVLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAKE
8: 235-235
e_gw1.22.82.1 5 0 U2 GTCACCTC..CCAG
LOC_Os07g27300.1 5 0 U2 GTGAAGTA..TCAG
LOC_Os07g27300.2 5 0 U2 GTGAAGTA..TCAG
GRMZM2G177842_T01 5 0 U2 GTGAGTTA..CCAG
estExt_Genewise1.C_chr_22544 5 0 U2 GTGAATTA..CCAG
estExt_fgenesh4_pg.C_LG_III0864 5 0 U2 GTGAGTTG..GCAG
estExt_fgenesh4_pm.C_290170 5 0 U2 GTGAGTTA..ACAG
chr3.CM0127.780.nd 5 0 U2 GTGAGTTT..TCAG
Glyma09g35800.1 5 0 GC GCAAGTTT..TCAG
Glyma09g35800.2 5 0 GC GCAAGTTT..TCAG
Glyma12g01550.1 5 0 GC GCGAGTTT..TCAG
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
SGEDLSPIRVGGSVDKKKKHNNNNNQDEGGKDKLSPAREKEKDRDREKGREKEKEREKDR
KARDEERIAREKKAEERRKQREKEYDVG----GRDGGSRREKSGDRDYDRDRYYDRNRGR
KARDEERIAREKKAEERRKQREKEYDVG----GRDGGSRREKSGDRDYDRDRYYDRNRGR
KSKEEDRLAREQKAEERRKQRGKEYDNG----GRDRDTRREKSGERDYDRDRQYERSRGR
KTKEEERLAREQKAEERQKQRGKEYDSG----GRDRDTRRERSGERDYDRDRQYERSRGR
KGKEEERLVRGKEADDKRKPREKESES-----KRSGSSDRERYRDRDRNRDGDRHRDRGR
KAREEERLAREKEAGERKKPREKEYESSS---RRSDSGDRDRYRERERDRDRDRERSR--
KAREEERLAREKEAEERRKLREKENES-----RRSGSGDRDRYHDRDRERERDRHRDRER
KAREEERLKREKEAEERRKQREKESESRS---RRADSGDRDRTRDRDRDRERDRYRERER
KAIEEERLAREREAEERRKRKEQEYERK----RRGDSSDREKHRDKDRDRERDRYRDRDS
KANEEERLAREREVEERRKQREKESER-----RRSDSSDRDRHRDKDHNRERDRYRDRDS
KANEEERLAREREVEERRKQREKESER-----RRSDSSDRDRHRDKDHNRERDRYRDRDS
KANEEERLAREREAEERRKQREKESERR----RRSDSSDRDRHRDKDHNRERDRYRDRDS
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
DREKSRAKEKDKWRRE-WSRKHSDPLWHTTSPYRHHLNGGGDADC-RKRRRTDHAGAN--
ERSHDHRDRGSEYRSS-SYRNGRDSERD-RHRYRSD-DMRKDRSRVRSRSRSP-SRHGPD
ERSHDHRDRGSEYRSS-SYRNGRDSERD-RHRYRSD-DMRKDRSRVRSRSRSP-SRHGPD
DRSYDYRERGSEHRSN-LYRNGRDSERG-GHRYRSG-DMTNDRGRMRSRSRSP-TRHGYG
DRSYDYRQRGSEHRSNPYYRNGRDSERG-GHRYRSG-DMTSERGRMRSRSRSP-TRHGYG
DYRKPY-----------------------DRRSRSGRE-----DRDRSRSRSPHGRSGHR
-----------EWN----GRGSRG-----DWRTRNGRDGGKDRHRYRSRSRSP-VRHDRR
SR---------EWN----GRGSRD-----DWRAKNGRDGGRDRHRDRSRSCSP-VRHGRR
DRERPR-----EWN-----------------------DGGRDRYRDRSRSRSP-VRHSHR
DRERSR-----ERD----VRGYRDGGRGVDSRLGNRRNGGRDRYRDRSRSRSP-VKNSYR
DRERSR-----EHD----VRGYRDGGRGMDYRVRNG---GRDRYRDRSRSRSP-VKHSHR
DRERSR-----EHD----VRGYRDGGRGMDYRVRNG---GRDRYRDRSRSRSP-VKHSHR
DRERSR-----EHD----VRGYRDGGRGVDYRARNGRNGGRDRYRDRSRSRSP-GKHSHR
9: 359-359
chr3.CM0127.780.nd 6 2 U2 GTCTTGAA..CCAG
Pp~e_gw1.22.82.1
Os~LOC_Os07g27300.1
Os~LOC_Os07g27300.2
Zm~GRMZM2G177842_T01
Sb~estExt_Genewise1.C_chr_22544
At~AT5G51410.1
Pt~estExt_fgenesh4_pg.C_LG_III0864
Pt~estExt_fgenesh4_pm.C_290170
Vv~GSVIVP00029930001
Lj~chr3.CM0127.780.nd
Gm~Glyma09g35800.1
Gm~Glyma09g35800.2
Gm~Glyma12g01550.1
--------------------
Q-------------------
Q-------------------
RSGSPNH-------------
RSRSPDH-------------
RVSRSPIRQY----------
RSPRSPVRPY----------
RSPRSPVRPN----------
RSPQSPVRPY----------
RALLRLYNLPLVNIIYGEMG
RSS-----------------
RSS-----------------
RSS-----------------


3' UTR introns