SRGD Gene ID 477 BLASTp at NCBI n/a n/a  
OrganismsAt ,Mt ,Os ,Gm ,Zm ,Lj ,Sb ,Pt
Gene count14
Cintron count16
Cintron classesU2 ,em ,im ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
----------MDDRIP-----PPSPLQYSPSPV---HSSPHPL-------SSLRYSSSER
----------MDERIP-----PPSLLQYSQSPV---HSSPHPL-------NSMRYSSSER
----------MDERIP-----PPSLLQYSQSPA---HSSPHPL-------NSMRYSSSER
----------MDERIP-----PPSLLQYSQSPA---HSSPHPL-------NSM-------
----------MDERIP-----PPPFFQYSPSGV---HSSPHRH-------NSMTYSSSDR
----------MDERIP-----PPAFFQFLPSGA---HSSPHHQ-------SPLRSPASER
MMESGAGFVAMEERIS-----PGSFFQYPLSGF---RASPNRS-------PCP---PSDR
---------AMGERIP-----SGSYFQYPPSGVH--HATPQRS-------SSL---PSDL
----------MGERIP-----PGSYFQYPPSGVH--HASPHRS-------TSL---PSDL
----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR
----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR
----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR
----------MGERIP-----SGTYFQFPPPGPGL-PPSPIRS-------SSI---PSDR
----------MGEWIPQSGNNNGSYFQFPPHAPASAPPPPHPPHGHGHGLPPSPIRFSDR
2: 0-0
AT1G09660.1 0 0 U2 ..
3: 52-52
GRMZM2G125531_T02 0 2 U2 GTATTCTT..GCAG
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SLPPNHNFV-DPERIEHG--SP
ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP
ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP
-RYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP
ERYLAELLAERQKLAPFMQVLPFCNRFLNQEILRAS--SLPPNPNFV-EPERIDHGSPSP
ERYLAELLAERQKLAPFMQVLPFCNRLLNQEILRAS--SLPPNPNFV-EPERVNHG--SP
ERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS--------SFP-DLDRYEHG--SP
ERYLAELLAEKHKLGPFVQVLPICCRLLYQEIRRAS----AYNQGFV-DHERYEHE--SP
ERYLAELFAEKHKLGPFVQVLPNCCRLLNQEIRRAS----ACNQGLV-DHERYEHE--SP
DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP
DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP
DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP
ERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRIT----GFNQGFI-EHDRPESD--SP
ERYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRIS----SAGSGFIMEHDHPDSST-TP
4: 60-60
LOC_Os01g66300.1 0 2 U2 GTGGGTTC..GCAG
estExt_fgenesh1_kg.C_chr_30365 0 2 U2 GTGAGTGG..GCAG
GRMZM2G125531_T01 0 2 U2 GTGAGTGT..GCAG
fgenesh1_pm.C_chr_9000304 0 2 U2 GTATGTAT..GCAG
LOC_Os05g34670.1 0 2 U2 GTACGCAT..GTAG
gw1.86.88.1 0 2 U2 GTTAGTTT..ACAG
chr6.LjT09E22.140.nd 0 2 U2 GTCCTCCC..GCAG
5: 89-89
LOC_Os01g66300.1 1 1 U2 GTCGGTTT..GCAG
estExt_fgenesh1_kg.C_chr_30365 1 1 U2 GTTTGTCT..GCAG
GRMZM2G125531_T01 1 1 U2 GTTTGTTT..GCAG
GRMZM2G125531_T02 1 1 U2 GTTTGTTT..GCAG
fgenesh1_pm.C_chr_9000304 1 1 U2 GTTGGCAT..GCAG
LOC_Os05g34670.1 1 1 U2 GTTTATTT..GCAG
gw1.86.88.1 1 1 U2 GTTACTGG..GCAG
Glyma12g28690.3 0 1 U2 GTATGCTC..ACAG
Glyma12g28690.1 0 1 U2 GTATGCTC..ACAG
Glyma12g28690.2 0 1 U2 GTATGCTC..ACAG
chr6.LjT09E22.140.nd 1 1 U2 GTTTGTAA..GCAG
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
LRLP-GLPVNGQPMDLEGWSGMQTEN------MRVLQAS-SMGWNGPPAITGTPVVKKVV
LRLP-GHPVNGQPMDLEGWTGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM
LRLP-GHPVNGQPMDLEGWSGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM
LRLP-GHPVNGQPMDLEGWSGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM
LRLA-GHPMNGQPMDLEGWSGMQTEY------RGVLQSP-SANWNGSPGVVGNPTVKKVV
LRLT-GHPMNGQPMDLEGWSGMQTE-------MGVLQSP-SMGWNVAPGVAGSPVVKKVV
FRSL-GQPTNGK-LDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVI
FRSL-GQHPNGRPMDLEGWSAMPKEENGHLQRMASLPAA-SMGWPGVPGISSTPVVKRVI
FRSL-GQHSNGRTMDLEAWSAMPTEENGHLQRMASFPAA-SMGWPGVPGIPITPVVKRVI
-------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI
-------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI
-------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI
FRSL-SQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAP-PMGWPGTQGVPTTPVVKRVI
FRPPLPQHPITRPMDFD-WP--HREDNGNIQRMGSFQAS-PVGWHGPQGIPTTPIVKRVI
6: 144-144
LOC_Os01g66300.1 2 0 U2 GTAATGCA..TCAG
estExt_fgenesh1_kg.C_chr_30365 2 0 U2 GTGCATAT..CAAG
GRMZM2G125531_T01 2 0 U2 GTGCATAT..CAAG
GRMZM2G125531_T02 2 0 U2 GTGCATAT..CAAG
fgenesh1_pm.C_chr_9000304 2 0 U2 GTTGTCCC..TCAG
LOC_Os05g34670.1 2 0 U2 GTAATACA..GCAG
gw1.86.88.1 2 0 U2 GTAATGCG..GCAG
chr6.LjT09E22.140.nd 2 0 U2 GTAATGCT..GCAG
7: 168-168
AC140549_7.2 0 0 U2 GTATATGT..GCAG
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG
RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG
RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG
RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG
RMDVPVDKYPN-YNFVGRLLGPRGNSLKRVEATTHCRVYICGRGSVKDSVKEDKLRDKPG
RIDVPVDKYPN-YNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPG
RLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPG
RLDVPVDKYPN-YNFVGRILGPRGNSLKRVEALTECRVYIRGKGSVKDSLKEEKLKDKPG
RLDVPVDKYPS-YNFVGRILGPRGNSLKRVEALTDCRVYIRGKGSVKDSLKEEKLKDKPG
RLDVPVDKFPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG
RLDVPVDKFPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG
RLDVPVDKFPN-YNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG
RLDVPVEKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG
RLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG
8: 190-190
LOC_Os01g66300.1 3 0 U2 GTACGCTT..TCAG
estExt_fgenesh1_kg.C_chr_30365 3 0 U2 GTGGGTAG..TCAG
GRMZM2G125531_T01 3 0 U2 GTGGGTAG..TTAG
GRMZM2G125531_T02 3 0 U2 GTGGGTAG..TTAG
fgenesh1_pm.C_chr_9000304 3 0 U2 GTATGTGC..CTAG
LOC_Os05g34670.1 3 0 U2 GTATGTAC..TTAG
gw1.86.88.1 3 0 U2 GTAAGTCC..GCAG
Glyma12g28690.3 1 0 U2 GTATGTAT..TCAG
Glyma12g28690.1 1 0 U2 GTATGTAT..TCAG
Glyma12g28690.2 1 0 U2 GTATGTAT..GCAG
chr6.LjT09E22.140.nd 3 0 U2 GTAAGTAA..TCAG
9: 206-206
AC140549_7.2 1 0 U2 GTTAGTCA..GCAG
10: 230-230
LOC_Os01g66300.1 4 0 U2 GTATCTAA..ACAG
estExt_fgenesh1_kg.C_chr_30365 4 0 U2 GTAGCTAA..ATAG
GRMZM2G125531_T01 4 0 U2 GTAACTAA..ATAG
GRMZM2G125531_T02 4 0 U2 GTAACTAA..ATAG
fgenesh1_pm.C_chr_9000304 4 0 U2 GTAATAAA..ATAG
LOC_Os05g34670.1 4 0 U2 GTAATTGA..ATAG
gw1.86.88.1 4 0 U2 GTATGAAT..CCAG
Glyma12g28690.3 2 0 U2 GTATGCTT..ATAG
Glyma12g28690.1 2 0 U2 GTATGCTT..ATAG
Glyma12g28690.2 2 0 U2 GTATGCTT..ATAG
chr6.LjT09E22.140.nd 4 0 U2 GTAAGTTG..GTAG
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
YEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGT
YEHLNEQLHVLVEAEFPVDMVDARLNQAVSILEDLLKPIDESMDFYKKQQLRELAILNGT
YEHLNEQLHVLVEAEFPADMVDVRLNQAVSILEDLLKPIDESMDYYKKQQLRELAILNGT
YEHLNEQLHVLVEAEFPADMVDVRLNQAVSILEDLLKPIDESMDYYKKQQLRELAILNGT
YEHLNDPLHVLVEAEFPADIVDARLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGT
YEHLNDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGT
YEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGT
YEHLNEPLHVLVEAEFPEDIMNARLDHAITILESLLKPVV--------------------
YEHLNEPLHVLVEAEFPEDIINARLEHAITILESLLKPVV--------------------
YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPV-----VYVVIVCVCVCVCYCI
YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT
YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT
YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMINGT
YEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGT
11: 259-259
AC140549_7.2 2 0 U2 GTCTGTTC..TCAG
12: 278-278
LOC_Os01g66300.1 5 0 U2 GTATGCAC..CCAG
estExt_fgenesh1_kg.C_chr_30365 5 0 U2 GTATGTAT..GCAG
GRMZM2G125531_T01 5 0 U2 GTATGTAA..TCAG
GRMZM2G125531_T02 5 0 U2 GTATGTAA..TCAG
fgenesh1_pm.C_chr_9000304 5 0 U2 GTCTGTTA..TCAG
LOC_Os05g34670.1 5 0 U2 GTATGTAC..TCAG
Glyma12g28690.1 3 0 U2 GTATATGT..CCAG
Glyma12g28690.2 3 0 U2 GTATATGT..CCAG
chr6.LjT09E22.140.nd 5 0 U2 GTATGGAT..GCAG
Os~LOC_Os01g66300.1
Sb~estExt_fgenesh1_kg.C_chr_30365
Zm~GRMZM2G125531_T01
Zm~GRMZM2G125531_T02
Sb~fgenesh1_pm.C_chr_9000304
Os~LOC_Os05g34670.1
At~AT1G09660.1
Pt~gw1.150.139.1
Pt~gw1.86.88.1
Gm~Glyma12g28690.3
Gm~Glyma12g28690.1
Gm~Glyma12g28690.2
Lj~chr6.LjT09E22.140.nd
Mt~AC140549_7.2
LREESPS----PHL--SPSVSPFNSTGMKRAKTGR
LREESPS----PHL--SPSVSPFNSTGMKRAKTGR
LREESPS----PHL--SPSVSPFNSTGMKRAKTGR
LREESPS----PHL--SPSVSPFNSTGMKRAKTGR
LREESPS----PYL--SPSVSPFNSTGMKRAKTGR
LREESPS----PHLSPSPSVSPFNSTGMKRAKTGR
LREESPSPSLSPCL--SPSMSPFNS---KRAKTEI
-----------------------------------
-----------------------------------
INKLCHG--LSC-----------------------
LREESPS--MSPSM--SPSMSPFNSTGMKRAKTGR
LREESPS--MSPSM--SPSMSPFNSTGMKRAKTGR
LREESPS--MSPSM--SPSLSPFNSTGMKRAKTG-
LREESPS--MSPSM--SPSMSPFNSNGMKRAKTGR