SRGD	Gene ID 477	BLASTp at NCBI	n/a	n/a		Organisms At ,Mt ,Os ,Gm ,Zm ,Lj ,Sb ,Pt Gene count 14 Cintron count 16 Cintron classes U2 ,em ,im ,absent
Home (Search)						Bookmark for this page        Download data

		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	----------MDDRIP-----PPSPLQYSPSPV---HSSPHPL-------SSLRYSSSER ----------MDERIP-----PPSLLQYSQSPV---HSSPHPL-------NSMRYSSSER ----------MDERIP-----PPSLLQYSQSPA---HSSPHPL-------NSMRYSSSER ----------MDERIP-----PPSLLQYSQSPA---HSSPHPL-------NSM------- ----------MDERIP-----PPPFFQYSPSGV---HSSPHRH-------NSMTYSSSDR ----------MDERIP-----PPAFFQFLPSGA---HSSPHHQ-------SPLRSPASER MMESGAGFVAMEERIS-----PGSFFQYPLSGF---RASPNRS-------PCP---PSDR ---------AMGERIP-----SGSYFQYPPSGVH--HATPQRS-------SSL---PSDL ----------MGERIP-----PGSYFQYPPSGVH--HASPHRS-------TSL---PSDL ----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR ----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR ----------MGERIP---CGSGMYFPFPP------PPSPIRP-------SSS---SSDR ----------MGERIP-----SGTYFQFPPPGPGL-PPSPIRS-------SSI---PSDR ----------MGEWIPQSGNNNGSYFQFPPHAPASAPPPPHPPHGHGHGLPPSPIRFSDR	2: 0-0 AT1G09660.1 0 0 U2 .. 3: 52-52 GRMZM2G125531_T02 0 2 U2 GTATTCTT..GCAG
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SLPPNHNFV-DPERIEHG--SP ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP ERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP -RYLAELLAERQKLAPFVQVLPFCTRLLNQEILRAS--SMAPNHNFV-DPERIEHG--SP ERYLAELLAERQKLAPFMQVLPFCNRFLNQEILRAS--SLPPNPNFV-EPERIDHGSPSP ERYLAELLAERQKLAPFMQVLPFCNRLLNQEILRAS--SLPPNPNFV-EPERVNHG--SP ERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS--------SFP-DLDRYEHG--SP ERYLAELLAEKHKLGPFVQVLPICCRLLYQEIRRAS----AYNQGFV-DHERYEHE--SP ERYLAELFAEKHKLGPFVQVLPNCCRLLNQEIRRAS----ACNQGLV-DHERYEHE--SP DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP DRYLAELLAERQKLVPFLQVLPQSTKLLTQEIRRMSVGGGGGGGGF--NHEPAAD---TP ERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRIT----GFNQGFI-EHDRPESD--SP ERYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRIS----SAGSGFIMEHDHPDSST-TP	4: 60-60 LOC_Os01g66300.1 0 2 U2 GTGGGTTC..GCAG estExt_fgenesh1_kg.C_chr_30365 0 2 U2 GTGAGTGG..GCAG GRMZM2G125531_T01 0 2 U2 GTGAGTGT..GCAG fgenesh1_pm.C_chr_9000304 0 2 U2 GTATGTAT..GCAG LOC_Os05g34670.1 0 2 U2 GTACGCAT..GTAG gw1.86.88.1 0 2 U2 GTTAGTTT..ACAG chr6.LjT09E22.140.nd 0 2 U2 GTCCTCCC..GCAG 5: 89-89 LOC_Os01g66300.1 1 1 U2 GTCGGTTT..GCAG estExt_fgenesh1_kg.C_chr_30365 1 1 U2 GTTTGTCT..GCAG GRMZM2G125531_T01 1 1 U2 GTTTGTTT..GCAG GRMZM2G125531_T02 1 1 U2 GTTTGTTT..GCAG fgenesh1_pm.C_chr_9000304 1 1 U2 GTTGGCAT..GCAG LOC_Os05g34670.1 1 1 U2 GTTTATTT..GCAG gw1.86.88.1 1 1 U2 GTTACTGG..GCAG Glyma12g28690.3 0 1 U2 GTATGCTC..ACAG Glyma12g28690.1 0 1 U2 GTATGCTC..ACAG Glyma12g28690.2 0 1 U2 GTATGCTC..ACAG chr6.LjT09E22.140.nd 1 1 U2 GTTTGTAA..GCAG
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	LRLP-GLPVNGQPMDLEGWSGMQTEN------MRVLQAS-SMGWNGPPAITGTPVVKKVV LRLP-GHPVNGQPMDLEGWTGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM LRLP-GHPVNGQPMDLEGWSGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM LRLP-GHPVNGQPMDLEGWSGIQTEASQH---MGVLQAS-SMGWNGAPVLAATPVVKKVM LRLA-GHPMNGQPMDLEGWSGMQTEY------RGVLQSP-SANWNGSPGVVGNPTVKKVV LRLT-GHPMNGQPMDLEGWSGMQTE-------MGVLQSP-SMGWNVAPGVAGSPVVKKVV FRSL-GQPTNGK-LDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVI FRSL-GQHPNGRPMDLEGWSAMPKEENGHLQRMASLPAA-SMGWPGVPGISSTPVVKRVI FRSL-GQHSNGRTMDLEAWSAMPTEENGHLQRMASFPAA-SMGWPGVPGIPITPVVKRVI -------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI -------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI -------PPYFRPMDLEGWAIEVQQDKPNPQRM--------MAWP-------APVVKRVI FRSL-SQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAP-PMGWPGTQGVPTTPVVKRVI FRPPLPQHPITRPMDFD-WP--HREDNGNIQRMGSFQAS-PVGWHGPQGIPTTPIVKRVI	6: 144-144 LOC_Os01g66300.1 2 0 U2 GTAATGCA..TCAG estExt_fgenesh1_kg.C_chr_30365 2 0 U2 GTGCATAT..CAAG GRMZM2G125531_T01 2 0 U2 GTGCATAT..CAAG GRMZM2G125531_T02 2 0 U2 GTGCATAT..CAAG fgenesh1_pm.C_chr_9000304 2 0 U2 GTTGTCCC..TCAG LOC_Os05g34670.1 2 0 U2 GTAATACA..GCAG gw1.86.88.1 2 0 U2 GTAATGCG..GCAG chr6.LjT09E22.140.nd 2 0 U2 GTAATGCT..GCAG 7: 168-168 AC140549_7.2 0 0 U2 GTATATGT..GCAG
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG RLDVPVDKYPN-YNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPG RMDVPVDKYPN-YNFVGRLLGPRGNSLKRVEATTHCRVYICGRGSVKDSVKEDKLRDKPG RIDVPVDKYPN-YNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPG RLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPG RLDVPVDKYPN-YNFVGRILGPRGNSLKRVEALTECRVYIRGKGSVKDSLKEEKLKDKPG RLDVPVDKYPS-YNFVGRILGPRGNSLKRVEALTDCRVYIRGKGSVKDSLKEEKLKDKPG RLDVPVDKFPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG RLDVPVDKFPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG RLDVPVDKFPN-YNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKEKPG RLDVPVEKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG RLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPG	8: 190-190 LOC_Os01g66300.1 3 0 U2 GTACGCTT..TCAG estExt_fgenesh1_kg.C_chr_30365 3 0 U2 GTGGGTAG..TCAG GRMZM2G125531_T01 3 0 U2 GTGGGTAG..TTAG GRMZM2G125531_T02 3 0 U2 GTGGGTAG..TTAG fgenesh1_pm.C_chr_9000304 3 0 U2 GTATGTGC..CTAG LOC_Os05g34670.1 3 0 U2 GTATGTAC..TTAG gw1.86.88.1 3 0 U2 GTAAGTCC..GCAG Glyma12g28690.3 1 0 U2 GTATGTAT..TCAG Glyma12g28690.1 1 0 U2 GTATGTAT..TCAG Glyma12g28690.2 1 0 U2 GTATGTAT..GCAG chr6.LjT09E22.140.nd 3 0 U2 GTAAGTAA..TCAG 9: 206-206 AC140549_7.2 1 0 U2 GTTAGTCA..GCAG 10: 230-230 LOC_Os01g66300.1 4 0 U2 GTATCTAA..ACAG estExt_fgenesh1_kg.C_chr_30365 4 0 U2 GTAGCTAA..ATAG GRMZM2G125531_T01 4 0 U2 GTAACTAA..ATAG GRMZM2G125531_T02 4 0 U2 GTAACTAA..ATAG fgenesh1_pm.C_chr_9000304 4 0 U2 GTAATAAA..ATAG LOC_Os05g34670.1 4 0 U2 GTAATTGA..ATAG gw1.86.88.1 4 0 U2 GTATGAAT..CCAG Glyma12g28690.3 2 0 U2 GTATGCTT..ATAG Glyma12g28690.1 2 0 U2 GTATGCTT..ATAG Glyma12g28690.2 2 0 U2 GTATGCTT..ATAG chr6.LjT09E22.140.nd 4 0 U2 GTAAGTTG..GTAG
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	YEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGT YEHLNEQLHVLVEAEFPVDMVDARLNQAVSILEDLLKPIDESMDFYKKQQLRELAILNGT YEHLNEQLHVLVEAEFPADMVDVRLNQAVSILEDLLKPIDESMDYYKKQQLRELAILNGT YEHLNEQLHVLVEAEFPADMVDVRLNQAVSILEDLLKPIDESMDYYKKQQLRELAILNGT YEHLNDPLHVLVEAEFPADIVDARLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGT YEHLNDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGT YEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGT YEHLNEPLHVLVEAEFPEDIMNARLDHAITILESLLKPVV-------------------- YEHLNEPLHVLVEAEFPEDIINARLEHAITILESLLKPVV-------------------- YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPV-----VYVVIVCVCVCVCYCI YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT YEHLKEPLHVLVEAEFPEDIINARLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMINGT YEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGT	11: 259-259 AC140549_7.2 2 0 U2 GTCTGTTC..TCAG 12: 278-278 LOC_Os01g66300.1 5 0 U2 GTATGCAC..CCAG estExt_fgenesh1_kg.C_chr_30365 5 0 U2 GTATGTAT..GCAG GRMZM2G125531_T01 5 0 U2 GTATGTAA..TCAG GRMZM2G125531_T02 5 0 U2 GTATGTAA..TCAG fgenesh1_pm.C_chr_9000304 5 0 U2 GTCTGTTA..TCAG LOC_Os05g34670.1 5 0 U2 GTATGTAC..TCAG Glyma12g28690.1 3 0 U2 GTATATGT..CCAG Glyma12g28690.2 3 0 U2 GTATATGT..CCAG chr6.LjT09E22.140.nd 5 0 U2 GTATGGAT..GCAG
Os~LOC_Os01g66300.1 Sb~estExt_fgenesh1_kg.C_chr_30365 Zm~GRMZM2G125531_T01 Zm~GRMZM2G125531_T02 Sb~fgenesh1_pm.C_chr_9000304 Os~LOC_Os05g34670.1 At~AT1G09660.1 Pt~gw1.150.139.1 Pt~gw1.86.88.1 Gm~Glyma12g28690.3 Gm~Glyma12g28690.1 Gm~Glyma12g28690.2 Lj~chr6.LjT09E22.140.nd Mt~AC140549_7.2	LREESPS----PHL--SPSVSPFNSTGMKRAKTGR LREESPS----PHL--SPSVSPFNSTGMKRAKTGR LREESPS----PHL--SPSVSPFNSTGMKRAKTGR LREESPS----PHL--SPSVSPFNSTGMKRAKTGR LREESPS----PYL--SPSVSPFNSTGMKRAKTGR LREESPS----PHLSPSPSVSPFNSTGMKRAKTGR LREESPSPSLSPCL--SPSMSPFNS---KRAKTEI ----------------------------------- ----------------------------------- INKLCHG--LSC----------------------- LREESPS--MSPSM--SPSMSPFNSTGMKRAKTGR LREESPS--MSPSM--SPSMSPFNSTGMKRAKTGR LREESPS--MSPSM--SPSLSPFNSTGMKRAKTG- LREESPS--MSPSM--SPSMSPFNSNGMKRAKTGR