SRGD Gene ID 472 BLASTp at NCBI n/a n/a  
OrganismsOs ,Pt ,Gm ,Vv ,Mt ,Zm ,Pp ,Lj ,Sb ,At
Gene count14
Cintron count14
Cintron classesU2 ,em ,im ,absent
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944
----------------------------------------------------------MS
----------------------------------------------------------MS
----------------------------------------------------------MS
--------------------------------------------MLIQYDMWCYETLFQS
----------------MKILSLCVYSNPYYHFRIGTSLFIVAQTQISTIRSPTLRELSMS
----------------------------------------------------------MS
----------------------------------------------------------MS
----------------------------------------------------------MS
----------------------------------------------------------MS
----------------------------------------------------------MS
MYGQGPALFLGEFFPLPPLRPCRAAAAASTVRAKIRSSLSAIFGRRRQQDLREGFRVEMA
----------------------------------------------------------MA
----------------------------------------------------------MA
2: 17-17
Glyma05g28190.1 0 1 U2 GTAAAAAA..CAAG
3: 58-58
estExt_gwp_gw1.C_1900008 0 0 U2 GTACAGGA..TTAG
estExt_Genewise1.C_350284 0 0 U2 GTATGATT..TCAG
AT2G03870.1 0 0 U2 GTAAAGTT..ACAG
Glyma05g28190.1 1 0 U2 GTAAGATT..ACAG
LOC_Os08g08040.1 1 0 U2 GTAAGTTG..GCAG
Glyma08g11160.1 0 0 U2 GTAAGTTT..ACAG
estExt_Genewise1_v1.C_LG_IX3230 1 0 U2 GTAATTGA..TCAG
chr3.LjT46L11.10.nc 0 0 U2 GTGAGTAG..TCAG
GRMZM2G106105_T01 0 0 U2 GTAAGCGT..TCAG
estExt_Genewise1.C_chr_67944 0 0 U2 GTAAGCGT..TCAG
Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944
GRKETVLDLAKFVDRGVSVKLSGGRQVTGILKGYDQLLNLVLDEATENLRDSDDPMKTTD
GRKETVLDLAKFVDRGVSVKLSGGRQVTGTLKGYDQLLNLVLDEATENLRDSDDPLKTTD
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTD
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTD
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTD
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSG
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTD
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTD
----------------------------------------------------------MS
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL-----------
GRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVENEREQDDPLKLSG
GRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYEREQDDPLKLSG
GRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSG
4: 85-85
estExt_gwp_gw1.C_1900008 1 1 U2 GTGAGCAG..GCAG
estExt_Genewise1.C_350284 1 1 U2 GTTGGTTA..GCAG
AT2G03870.1 1 1 U2 GTAATAAA..GCAG
GSVIVP00008837001 0 1 U2 GTCTTGAA..ACAG
Glyma05g28190.1 2 1 U2 GTTAGGTT..GCAG
LOC_Os08g08040.1 2 1 U2 GTTGGTTG..GCAG
Glyma08g11160.1 1 1 U2 GTTAGGTT..GCAG
chr3.LjT46L11.10.nc 1 1 U2 GTGTGTGT..TCAG
GRMZM2G106105_T01 1 1 U2 GTTGATTT..CCAG
estExt_Genewise1.C_chr_67944 1 1 U2 GTTGATTT..CCAG
5: 109-109
estExt_gwp_gw1.C_1900008 2 1 U2 GTCAGGTG..TCAG
estExt_Genewise1.C_350284 2 1 U2 GTGAGGTT..GCAG
AT2G03870.1 2 1 U2 GTATCTTT..TCAG
GSVIVP00008837001 1 1 U2 GTAAATCA..GCAG
Glyma05g28190.1 3 1 U2 GTAACTAA..GCAG
LOC_Os08g08040.1 3 1 U2 GTACTGCT..GTAG
Glyma08g11160.1 2 1 U2 GTAACTAA..GCAG
GRMZM2G106105_T01 2 1 U2 GTATTTTG..GTAG
estExt_Genewise1.C_chr_67944 2 1 U2 GTATTTTC..GTAG
Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944
QIRQLGLIVCRGTAVMLVAPTDGTEEIPNPFLQNETPAAT
QMRQLGLIVCRGTAVMLVAPTDGTEEIANPFLANETPAAT
QTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAEAV---
QTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA---
QTRNLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGS---
KTRQLGLIVCRGTAVMLVSPTDGTDEIANPF-QSDGA---
QTRNLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGS---
QTRSLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA---
GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTD
----------------------------------------
KTRQLGLIVCRGTAVMLVSPTDGTDEIANPFL-ADGA---
KTRQLGLIVCRGTAVMLVSPTDGTDEIANPFL-AEGA---
KTRQLGLIVCRGTAVMLVSPTDGTDEIANPFL-ADGA---
6: 127-127
estExt_gwp_gw1.C_1900008 3 0 U2 GTAAGTTC..GCAG
estExt_Genewise1.C_350284 3 0 U2 GTAAGTTC..TCAG
AT2G03870.1 3 0 U2 GTATGATT..TTAG
GSVIVP00008837001 2 0 U2 GTATGTTC..GCAG
Glyma05g28190.1 4 0 U2 GTAAGTTC..GCAG
LOC_Os08g08040.1 4 0 U2 GTAAGTTT..GCAG
Glyma08g11160.1 3 0 U2 GTAAGTTC..GCAG
GRMZM2G106105_T01 3 0 U2 GTAAGTAT..GTAG
estExt_Genewise1.C_chr_67944 3 0 U2 GTAAGTAT..GCAG
7: 143-143
estExt_Genewise1_v1.C_LG_IX3230 2 1 U2 GTCGATAC..TCAG
8: 167-167
estExt_Genewise1_v1.C_LG_IX3230 3 1 U2 GTAACCAT..GCAG
Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944








GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTD




9: 185-185
estExt_Genewise1_v1.C_LG_IX3230 4 0 U2 GTATGTTT..ACAG
Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944








QTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA---QTRRLGLIVCRGTAVMLVSP




Pp~estExt_gwp_gw1.C_1900008
Pp~estExt_Genewise1.C_350284
At~AT2G03870.1
Vv~GSVIVP00008837001
Gm~Glyma05g28190.1
Os~LOC_Os08g08040.1
Gm~Glyma08g11160.1
Mt~AC142224_16.2
Pt~estExt_Genewise1_v1.C_LG_IX3230
Lj~chr3.LjT46L11.10.nc
Zm~GRMZM2G016097_T01
Zm~GRMZM2G106105_T01
Sb~estExt_Genewise1.C_chr_67944








TDGTDEIANPFVQPDGA---






3' UTR introns