SRGD Gene ID 471 BLASTp at NCBI n/a n/a  
OrganismsGm ,At ,Vv ,Os ,Zm ,Pp ,Lj ,Sb ,Pt
Gene count14
Cintron count10
Cintron classesU2 ,im ,absent ,em
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
--------MATAVAPKAHPTCINSGNPFHECSEYCYRRIAEGRTSNSA------------
-----MASSSSAASGKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQ-----RPPVD
MGKEGVAAGPAAEGSKSRSECINSSNPYHECSDYCLRKIAEARQRLDDELPDSWKRPPEQ
MGKEGVAAGPAAEGSKSRSECINSSNPYHECSDYCLRKIAEARQRLDDELPDSWKRPPEQ
MGKEGVAAGPAAEGSKSRSECINSSNPYHECSDYCLRKIAEARQRLDDELPDSWKRPPEQ
MGKEGVVAGPAADGSKSRPECINSSNPYHECTDYCLRKIAEARQRLDDELPDSWKRPPEH
MGREGVVAGPAAEGSKSRPECINSSNPYHECSDYCLRKIAEARQRLDDELPDSWKRPPEQ
----------MSDERAVHPDCRNAGNPFHECSDYCFRVIAVAKLRMQQLQSE--------
----------MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESE--------
----------MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESE--------
----------MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQES---------
----------MVSERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNTG--------
----------MAGERRVHPDCINASNPYHECVEYCFRKIAEAKAQMDKKESG--------
----------MADERRVHPDCINASNPYHECVEYCFIKIAEAKARAEIKETE--------
2: 10-10
AT2G16860.1 0 0 U2 ..
3: 50-50
Glyma10g42810.1 1 1 U2 GTTAGCTT..TCAG
Glyma20g24190.1 1 1 U2 GTTAGTTT..TCAG
Glyma20g24190.2 1 1 U2 GTTAGTTT..GAAG
GSVIVP00036134001 0 1 U2 GTACTTTC..TCAG
estExt_fgenesh4_pm.C_LG_IV0542 0 1 U2 GTATTTTT..ACAG
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
------------------------VAAADGN---------------------------DA
RTVHPDCINASNPYHVCSEYCFKRIADAKSG--------------LERAEQEPPSA---D
RTVHPDCINASNPYHECSDYCFKRIADAKSPACGAGDSFPVNSNRLEREERQPPADVFAA
RTVHPDCINASNPYHECSDYCFKRIADAKSPACGAG---------LEREERQPPADVFAA
RTVHPDCINASNPYHECSDYCFKRIADAKSPACG-----------LEREERQPPADVFAA
RTVHRDCINACNPYHECSDYCFKRIADAKSG--------------LERGEQQPPADVATA
RTVHPDCINASNPYHECSDYCFRRIADAKSG--------------LERGEGQPPADVATA
------------------------VAQASGG---------------SSREQAVPDESYPD
------------------------VGQASGG---------------SNSKQAIPDESYLG
------------------------VGQASGG---------------NNSKQAIPDESYVE
------------------------VGQASGG---------------NNSKQAIPDESYVE
------------------------LAKVH-------------------EQTREPLD---D
------------------------V----------------------------PDQ---D
------------------------VVQAKGG--------------IGWSSSQAPEQ---G
4: 88-89
e_gw1.19.97.1 0 1 U2 GTAATTCT..TCAG
LOC_Os06g49740.1 0 1 U2 GTGCTAGC..TTAG
GRMZM2G308689_T01 0 1 U2 GTCCGTGC..TTAG
estExt_Genewise1.C_chr_108163 0 1 U2 GTGCGTGC..TTAG
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
ANVESEVS--EQNTTVVVNEPEDSGIDP--AAYAAMTPTQKKLFDLRLKLNQARKDNQLA
AGKSDAAQA-EGGGGDDDAEQEDAGSDD---GYPQMTEKQKKLFELRLKMNEARKANQQA
AGMSDAVEQ-HRPIDNDSDEQEGAGPDD---GYPQMTEKQKKLFELRLKMNEARKANQQA
AGMSDAVEQ-HRPIDNDSDEQEGAGPDD---GYPQMTEKQKKLFELRLKMNEARKANQQA
AGMSDAVEQ-HRPIDNDSDEQEGAGPDD---GYPQMTEKQKKLFELRLKMNEARKANQQA
AGTSDAVEQ-QQLEDNDADGQEGAAADD---GYPQMTEKQKKLFELRLKMNEARKANQQA
AGTSDAAEQ-QRPEDNDADKQEGAGADD---GYLQMTEKQKKLFELRLKMNEARKANQQA
EGTHDDGPKPDENSDSDPDRPVAEEMEG---GYENLSGRQKKWMELRAKMQEAKKRNQIE
EEIHDDRPDLEENSDSDPDQPALQEAEQEEVDYTKLSARQKKWMELRAKMQEAKKRNQIE
KEIHNGRPDLEENSDSDPDQPAVQEAEQ-EVDYTKLSARQKKWMELRSKMQEAKKRNQIE
KEIHNGRPDLEENSDSDPDQPAVQEAEQ-EVDYTKLSARQKKWMELRSKMQEAKKRNQIE
KRIEEDSSE-EEEEEEDNQEP-----QV---DVTQLTGRQKKLFELRLKMNEARKSNQTD
KNTHDEGTDPEERSDDDNDQPVEEIEEV---DFTQLTGRQKKLFELRLKMNEARKANQTA
EELDEERPD-HEHSEDDDDRAVLDNVEG---DVTQLTGRKKKLFELRLKMNEARKANQTA
5: 169-169
e_gw1.19.97.1 1 0 U2 GTAAGTAT..ACAG
LOC_Os06g49740.1 1 0 U2 GTGCGGTC..GCAG
GRMZM2G308689_T01 1 0 U2 GTACTGCG..ACAG
estExt_Genewise1.C_chr_108163 1 0 U2 GTATGGCA..GCAG
Glyma10g42810.1 2 0 U2 GTAAACTA..GCAG
Glyma20g24190.1 2 0 U2 GTAAACTG..GCAG
Glyma20g24190.2 2 0 U2 GTAAACTG..GCAG
GSVIVP00036134001 1 0 U2 GTAAGTTT..GCAG
estExt_fgenesh4_pm.C_LG_IV0542 1 0 U2 GTAAATTT..GCAG
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
IIAEKKREDAPEETRGVSKQKWFEEKKRKVGKQLEANGLDMSKAYMLDTQEDAEGKYKKW
MVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLDMTKSYMLDTQESAEAKYKKW
MVAEKKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMKMAYMLDTQETAEAKYKKW
MVAEKKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMKMAYMLDTQETAEAKYKKW
MVAEKKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMKMAYMLDTQETAEAKYKKW
MVAEKKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMSKAYMLDTQETAEAKYKKW
MVAEKKRMEPRGESRGVSKQKWLDDRKKKIGKLLDSNGLDMSKAYMLDTQETAETKYKKW
IAAEKKRMEGPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKW
IAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKW
IAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKW
IAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKW
VGSEKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKW
MVAEKKKMEAPPESRGISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKW
MVSEKKKMEAPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKW
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
EKKPAPFGWDVFNQKSLYNGYKKRTKNIVVNPEEYAKAREADPDFYRDGASLQYGKQVEV
EKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSKV
EKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMESYNKAKEADPEFYRDASSLQYGKVSNV
EKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMESYNKAKEADPEFYRDASSLQYGKVSNV
EKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMESYNKAKEADPEFYRDASSLQYGKVSNV
EKEPAPYGWDVFNQKTLYDAYKKRTKDIEVDMEAYNKAKEADPEFYRDASSLQYGKVSNV
EKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSNV
DKDPAPFGWD--------------------------------------------------
EKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKI
EKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKI
EKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKI
EKEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKT
EKDPAPFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKC
EKDPAPFGWDVFNQKTLYNAYKKRTKNVDVDLEEYNKMKEADPEFYREASSLQYGKAPKT
6: 249-249
e_gw1.19.97.1 2 1 U2 GTAAGCTT..GCAG
LOC_Os06g49740.1 2 1 U2 GTGAGTTC..GCAG
GRMZM2G308689_T01 2 1 U2 GTGAGTGA..TCAG
estExt_Genewise1.C_chr_108163 2 1 U2 GTGAGTGA..TCAG
Glyma10g42810.1 3 1 U2 GTATGTTT..TCAG
Glyma20g24190.1 3 1 U2 GTATGTTT..TCAG
Glyma20g24190.2 3 1 U2 GTATGTTT..TCAG
GSVIVP00036134001 2 1 U2 GTATGTTT..ATAG
estExt_fgenesh4_pm.C_LG_IV0542 2 1 U2 GTATGTTC..ACAG
7: 295-295
e_gw1.19.97.1 3 0 U2 GTACTGAA..TCAG
LOC_Os06g49740.1 3 0 U2 GTACTTGC..ACAG
GRMZM2G308689_T01 3 0 U2 GTACTGCT..ACAG
estExt_Genewise1.C_chr_108163 3 0 U2 GTACTTCT..AAAG
Glyma10g42810.1 4 0 U2 GTGTACTA..ATAG
Glyma20g24190.1 4 0 U2 GTGTACTA..ATAG
Glyma20g24190.2 4 0 U2 GTGTACTA..ATAG
GSVIVP00036134001 3 0 U2 GTATGGTT..GCAG
estExt_fgenesh4_pm.C_LG_IV0542 3 0 U2 GTGCCACT..GCAG
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
PEENIDRMVKELDERGKARKEFSRRRKFHDERDIDSINDRNEHFNRKIERAFGKYTVEIK
PEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDRNEHFNKKVERAFGKYTLEIK
PEENIDKMVKELREREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKVERAFGKYTLEIK
PEENIDKMVKELREREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKVERAFGKYTLEIK
PEENIDKMVKELREREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKVERAFGKYTLEIK
PEENIDKMVKELKEREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKVERAFGKYTLEIK
PEENIDKMVKELKEREEKRKSFSRRRKFNEDKDIDSINDRNEHFNKKIERAFGKYTLEIK
----------------------------------------------------GTFSI---
SEEKIDKMVQELKNRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK
SEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK
SEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK
SQDKIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIK
SEDKIDKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIK
SEEKIERMVKELKDRDENRKSFSRRRRFRDEKDIDSINDRNEHFNKKIERAFGKYTLEIK
Pp~e_gw1.19.97.1
Os~LOC_Os06g49740.1
Zm~GRMZM2G102447_T02
Zm~GRMZM2G102447_T01
Zm~GRMZM2G102447_T03
Zm~GRMZM2G308689_T01
Sb~estExt_Genewise1.C_chr_108163
Lj~LjSGA_027768.1
Gm~Glyma10g42810.1
Gm~Glyma20g24190.1
Gm~Glyma20g24190.2
At~AT2G16860.1
Vv~GSVIVP00036134001
Pt~estExt_fgenesh4_pm.C_LG_IV0542
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
-----------
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD
NNLERGTALPD


3' UTR introns