SRGD Gene ID 466 BLASTp at NCBI n/a n/a  
OrganismsSb ,Zm ,At ,Os ,Gm ,Vv ,Pp ,Pt ,Lj
Gene count14
Cintron count5
Cintron classesU2 ,im ,absent ,em
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_gwp_gw1.C_2150124
Lj~LjSGA_035312.0.1
Gm~Glyma08g40200.1
Gm~Glyma08g40200.2
Gm~Glyma18g17590.1
Vv~GSVIVP00020286001
Zm~GRMZM2G121942_T03
Pt~eugene3.00100333
Pt~estExt_fgenesh4_pm.C_LG_VIII0705
Os~LOC_Os08g34480.1
Zm~GRMZM2G121942_T01
Sb~estExt_fgenesh1_kg.C_chr_40113
At~AT3G23325.1
At~AT4G14342.1
----------------------MQASDRFNINSQLEHLQAKYVGTGHADVNRFEWAVNIQ
-----------------------MASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQ
---------------MKFRLRFNFASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
MLLRKFQRVIGTEFLIIRVLFGSVASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQ
----------------------MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQ
2: 22-23
estExt_gwp_gw1.C_2150124 0 0 U2 GTGCGTGG..ATAG
Glyma08g40200.1 0 0 U2 GTACTTTT..ACAG
Glyma08g40200.2 0 0 U2 GTAGAGAT..ACAG
Glyma18g17590.1 0 0 U2 GTAGAGAG..GTAG
GSVIVP00020286001 0 0 U2 GTGTTTAA..ACAG
GRMZM2G121942_T03 1 0 U2 GTGGGTAG..AAAG
eugene3.00100333 0 0 U2 GTAAAGTC..GCAG
estExt_fgenesh4_pm.C_LG_VIII0705 0 0 U2 GTAAGTCA..GCAG
LOC_Os08g34480.1 1 0 U2 GTTAGTTG..AAAG
GRMZM2G121942_T01 1 0 U2 GTGGGTAG..AAAG
estExt_fgenesh1_kg.C_chr_40113 1 0 U2 GTTGGTAT..AAAG
AT3G23325.1 0 0 U2 GTTTGTCT..GCAG
AT4G14342.1 0 0 U2 ..
3: 51-51
estExt_gwp_gw1.C_2150124 1 2 U2 GTAAGCAC..ACAG
Glyma08g40200.1 1 2 U2 GTGAGTTT..GCAG
Glyma08g40200.2 1 2 U2 GTGAGTTT..GCAG
Glyma18g17590.1 1 2 U2 GTGAGTTT..GCAG
GSVIVP00020286001 1 2 U2 GTAAGTAA..GCAG
GRMZM2G121942_T03 2 2 U2 GTAAGTAT..ACAG
eugene3.00100333 1 2 U2 GTGAGATT..GCAG
estExt_fgenesh4_pm.C_LG_VIII0705 1 2 U2 GTGAGGGT..ACAG
LOC_Os08g34480.1 2 2 U2 GTAAGTAT..GCAG
GRMZM2G121942_T01 2 2 U2 GTAAGTAT..ACAG
estExt_fgenesh1_kg.C_chr_40113 2 2 U2 GTAAGTAC..ACAG
AT3G23325.1 1 2 U2 GTAAGTAT..TTAG
Pp~estExt_gwp_gw1.C_2150124
Lj~LjSGA_035312.0.1
Gm~Glyma08g40200.1
Gm~Glyma08g40200.2
Gm~Glyma18g17590.1
Vv~GSVIVP00020286001
Zm~GRMZM2G121942_T03
Pt~eugene3.00100333
Pt~estExt_fgenesh4_pm.C_LG_VIII0705
Os~LOC_Os08g34480.1
Zm~GRMZM2G121942_T01
Sb~estExt_fgenesh1_kg.C_chr_40113
At~AT3G23325.1
At~AT4G14342.1
RDSYASYIGHAPLLAFFAVAENESIGRVRYNFMQRMLLPCGKPPDRDQED
RDSYASYMGHYPLLSYFAIAENESIGRERYTFMQVLSLLCLLKTLIT---
RDSYASYIGHYPLLGFFAIAENESIGRERYSFMQKMLLPCGLPPEREED-
RDSYASYIGHYPLLGFFAIAENESIGRERYSFMQKMLLPCGLPPEREED-
RDSYASYIGHYPLLGFFAIAENESIGRERYSFMQKMLLPCGLPPEREED-
RDSYASYVGHYPLLAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD-
RDSYASYIGHYPMLAYFAIAENESIGRERYNFMQGL----GIK-------
RDSYASYMGHYPMLAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD-
RDSYASYIGHYPMLAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD-
RDSYASYIGHYPMLAYFSIAENESIGRERYNFMQKMLLPCGLPPERDED-
RDSYASYIGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPERDED-
RDSYASYIGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPERDED-
RDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE-
RDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE-
4: 92-93
estExt_gwp_gw1.C_2150124 2 0 U2 GTGAACAA..TCAG
Glyma08g40200.1 2 0 U2 GTTCATTT..GCAG
Glyma08g40200.2 2 0 U2 GTTCATTT..GCAG
Glyma18g17590.1 2 2 U2 GGTTCATT..TGCA
GSVIVP00020286001 2 0 U2 GTTTGCTC..ACAG
GRMZM2G121942_T03 3 0 U2 GTATTGCC..TTAG
eugene3.00100333 2 0 U2 GTTCTTCT..GCAG
estExt_fgenesh4_pm.C_LG_VIII0705 2 0 U2 GTTCGTTC..GCAG
LOC_Os08g34480.1 3 0 U2 GTATGTTA..GCAG
GRMZM2G121942_T01 3 0 U2 GTATTGCC..ACAG
estExt_fgenesh1_kg.C_chr_40113 3 0 U2 GTATGTAA..ACAG
AT3G23325.1 2 0 U2 GTTTGTTT..GCAG