SRGD Gene ID 465 BLASTp at NCBI n/a n/a  
OrganismsOs ,At ,Gm ,Pt ,Sb ,Lj ,Vv ,Zm ,Pp
Gene count14
Cintron count12
Cintron classesU2 ,em ,absent ,im
Home (Search) Bookmark for this page        Download data


5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
MEKGAPSSLFVNDGSFMEKFKQLQQGNGKEQ---EKDKGAAEKDSKPKTIVSGSVTPKPS
MDKGAPSSLFVNDGSFMEKFKQLQQGNGKEQ---EKDKGAAEKDSKPKTIVSGTVTPKPS
MDKGAPPSIFVNDGSFMERFRQLQQEKDK-----DKDKVVQVEDSKPVKIIS---NPKPA
------------------------------------------------------------
MEKGAAPSLFVNDGSFMERFKQLQQENEK-----EKGKGAKLEEPKQRMVVPATSTPNSI
MDKGVPPSLFVNDGSFMERFKQLQQEQ-------EKGKNVKLEDSKPIKVNSGSLSPNHS
MDKGVPPSLFVNDGSFMERFKQLQQEQ-------DKGKNVKLEDSKPIKVISGSLSPNPS
MDKGPPHSLFVNDGSFMARFKQLQQEQ-------GKGKNTKLEDSKPIKVVSRPLTPNPS
---MADKGLFANDGSFMERFKQMQEKEKEKAAAASSSAAAAAKATNPKPVVVAANTP--S
---MADKGLFANDGSFMERFKQMQEKEKEKAAAASSSAAAAAKATNPKPVVVAANTP--S
----MDKGLFTNDGSFMERFKQMQQEAQEKEKAAAAAASSAPKHANPKQGFAVAANK---
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
FGKVTMQLKANDGRKTPPTASGGKLAFSLKQKSKLMAPAVKLGEDEEDEDEVDAVNASGD
FGKVTMQFKTNDASKTSQTASSGKLAFSLKQKSKLVAPAVKLGEDDEDEDEADAVNTSGG
ANKISIGLKPNDAQK-----KGGKLAFSLKQKSKLLAPPVKLG-TEEDEDDEDVKHEQGF
------------------------------------------------------------
PSKTNNVSKTNGTRKTPLAAPNGKLAFSLKQKSKLVPPPVKLG-ADEDEEETDAGNLSSD
ITKTPVDLKVNDTRKTSQGGSSGKLAFSLKQKSKLVPPPVKLS-ADED-EETEAGYVSND
FTKTPVDLKVNDTRKISQGGSSGKLAFSLKQKSKLVPPPVKLS-ADEDEEETEAGYVSND
IGKAT------DARKTSQAGSSGKLAFSLKQKSKLVPPPIKL--TDEDEEETNAGDVSND
ASKRPLELKGGEVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREE--
ASKRPLELKGGEVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREE--
--------RPFELKKAAPVASSGKLAFSLK-KAKVAVAPV-FSADDEDEDAADVEREE--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
VSAKRQKLGQLDTSEQSSRRLD-VAPPPPSDPTVKNVADKLASFVAKHGRQFENVTRQKN
VSAKRQKLGQLDASEQSLKRLD-VAPPPPSDPTVKNVADKLASFVAKHGRQFENVTRQKN
GSVKRQKLEQRDTPVKSAKVSD-VAPPPPSDPTVKKVADKLASFVAKHGRPFEHITRQKN
---------------------------------VKKVADKLALFVAKNGRQFEEITRRKN
APMKRQKLGQKDSSEHPSPQVD-VAPPSPSDPAVKKVADKLASFVAKNGRQFEDVTRQRN
APLKRQKLGQEEGIDQSSRQLD-VAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKN
APLKRQKLGQEEGIDQSSRQLD-VAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKN
APSKRQKLGQDDDAEQSSRPLD-VAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKN
-PVKRQKYAQPEAPASVAALSGVVAPSPPNDMTVKQVADKLANFVAKNGRQFENVTRQRN
-PVKRQKYAQPEAPASVAALSGVVAPSPPNDMTVKQVADKLANFVAKNGRQFENVTRQRN
-PAKRQKSVQADAPVAAAPSGA-VAPPPPNDITVRQVADKLASFVAKNGRQFENITRQRN
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
2: 143-143
gw1.I.1893.1 0 1 U2 GTAATTAC..GCAG
estExt_fgenesh4_pg.C_LG_IX0951 0 1 U2 GTAATTAC..GCAG
AT3G52120.1 1 1 U2 GTAATGCC..GCAG
GSVIVP00008843001 0 1 U2 GTAATTAC..GCAG
Glyma08g16200.1 1 1 U2 GTAATTAC..GCAG
Glyma15g42690.1 1 1 U2 GTAATTAC..GCAG
chr3.LjT46L11.80.nc 0 1 U2 GTAATTAC..GCAG
LOC_Os09g10930.1 1 1 U2 GTAATCAT..GCAG
LOC_Os09g10930.2 1 1 U2 GTAATCAT..GCAG
e_gw1.2.20313.1 0 1 U2 GTAATCAT..GCAG
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
PGDTPFKFLFDENCADFKYYEYRLAEEEKALSQSRDSQISSSG--YTSASKSTGSYQSLQ
PGDTPFKFLFDENCADFKYYQYRLAEEEKALSQNRDSHISSSGGTSTSASKSTGSSRRSQ
PGDTPFKFLFDENCADYKYYVFRLAEEEKLISQTKDSGVLHSGDAGSRTSTAAIPLQKPA
PGNTPFSFLYDMESVEYKYYLHRVAQEEAVLAS--EVGAFQTSNSGGGSSNQSNSWRQSS
PGDTPFKFLFDEGCADYKYYEYRLAEEEKTLSQTRDSQTSQSGGTSTSAPKSTSGSQRSV
PGDTPFKFLFDERCAEYKYYEYRLAQEEDALGQSRESQVPRNGGTSTSSSKQASGHQRSS
PGDTPFKFLFDERCAEYKYYEYRLAQEENALVQSRESQVPRNGGTSTSSSKQTNGHQRSS
PGDTPFKFLFDERCADYKYYEYRLGQEEKTLLQYREPQAIHYG-TSISSSRPANGPQRSS
PGDTPFKFLFDKNCSDYKYYEFRLAEEEMLLAQSKEAQASKHASSSTPSSRAPSAPQRSS
PGDTPFKFLFDKNCSDYKYYEFRLAEEEMLLAQSKEAQASKHASSSTPSSRAPSAPQRSS
PGDTPFKFLFDKHCSDYKYYEFQLAEEERALAQSKEAEASKSANSGIASFKAPGGTHRSS
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
3: 185-185
gw1.I.1893.1 1 2 U2 GTTAGTCA..GCAG
estExt_fgenesh4_pg.C_LG_IX0951 1 2 U2 GTGAGTCA..GCAG
AT3G52120.1 2 2 U2 GTATGTAT..CCAG
GSVIVP00008843001 1 2 U2 GTATGTTT..ACAG
Glyma08g16200.1 2 2 U2 GTAAGTAT..GCAG
Glyma15g42690.1 2 2 U2 GTAAGTAT..GCAG
chr3.LjT46L11.80.nc 1 2 U2 GTATGTTT..GCAG
LOC_Os09g10930.1 2 2 U2 GTATGCAG..TCAG
LOC_Os09g10930.2 2 2 U2 GTATGCAG..TCAG
e_gw1.2.20313.1 1 2 U2 GTACGACT..GCAG
4: 221-222
gw1.I.1893.1 2 2 U2 GTACTTTG..CAAG
estExt_fgenesh4_pg.C_LG_IX0951 2 1 U2 GTCAGTCC..ATAG
AT3G52120.1 3 1 U2 GTAAGTAT..CCAG
GSVIVP00008843001 2 1 U2 GTGGTACT..ATAG
Glyma08g16200.1 3 1 U2 GTTAGTAT..TCAG
Glyma15g42690.1 3 1 U2 GTTAGTAT..TCAG
chr3.LjT46L11.80.nc 2 1 U2 GTTAGTTT..CTGG
LOC_Os09g10930.1 3 1 U2 GTTTGTGA..TCAG
LOC_Os09g10930.2 3 1 U2 GTTTGTGA..TCAG
e_gw1.2.20313.1 2 1 U2 GTTCGTGG..GCAG
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
-QQHSNYQIPASALYDDAEELKGSMST------SSGRTGNSTYHAPAGTDPIAMMEFYMK
-QQQSNYQIPASALYEAAEEPKGSLST------SSGRAGESS--APAGTDPIEMMEFYMK
-YQQTGYQIPASALYDTPVEPGASSRSAQASITRPSDSDSFS--GPRGADPLSMMEFYMK
EGQQLRYQTPASALYSGGSEHQRPSFSSGYN--Q----------HPYANDSVAMMEFYTK
-QQRSNYQIPTSALYEATEDTRASGSSVQAA--LAGRAGESS--APTGADPIAMMEFYMK
--QQHTYQIPASALYESPDNPRASGFSIQTS--PVGSSEEPS--GSSNADSLALMEFYMK
--QQHTYQIPASALYESADNPRASGFSIQTS--SVGSSEEPS--GSSNADSLALMEFYMK
-EQRPTYQIPASALYESGDVPRTSGSSVQAL--SVVSSAEPS--GSSNADSLALMEFYMK
FEQKTNYQTPASALYGAYEGSSSQGSSSGY--------------GEPPKDPVALMEFYMK
FEQKTNYQTPASALYGAYEGSSSQGSSSGY--------------GEPPKDPVALMEFYMK
FEQKSNYQTPASALYGAYEGSSSQGSSSSYANLVAGDH------MTPPSDPVALMEFYAK
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
5: 269-269
LOC_Os09g10930.1 4 1 U2 GTAAATTA..GCAG
LOC_Os09g10930.2 4 1 U2 GTAAATTA..GCAG
e_gw1.2.20313.1 3 1 U2 GTAAAAGT..CTAG
6: 276-277
estExt_fgenesh4_pg.C_LG_IX0951 3 1 U2 GTAATAGC..GCAG
AT3G52120.1 4 1 U2 GTATGTTC..GCAG
GSVIVP00008843001 3 1 U2 GTTATGGT..GTAG
Glyma08g16200.1 4 1 U2 GTAATTGT..GCAG
Glyma15g42690.1 4 1 U2 GTAATTGT..GCAG
chr3.LjT46L11.80.nc 3 1 U2 GTAAGGGA..GCAG
7: 282-282
gw1.I.1893.1 3 2 U2 GTATGCAA..CTAG
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
KAAHEERRRQPKHSKDEMPPPASLQGYYMLCVQRNC-----------------LSKKGHH
KAAQEERRRQPKLSKDEMPPPASLQAA--------------------------SSLKGHH
KAAQEEKMRRPRQSKDEMPPPASLQGPSETSSTD-------------------PGKRGHH
KAAQEALRKPPKQSKDEMPPPPGLHPPP-------------------------SGKKGHH
KAAQEERRRQPKQSKDEMPPPASLQT---------------------------PGKKGHH
KAAREEKYKQPKHSKDEMPPPASLLG-----------------------------KKGHH
KAAREEKYKQPKHSKDEMPPPASLLG-----------------------------KKGHH
KAAREERSKQPKQSKDEMPPPASLQG-----------------------------KKGHH
KAAQEERKRPPKQSKDEMPPPPSLQAP--------------------------SSKKGHH
KAAQEERKRPPKQSKDEMPPPPSLQAP--------------------------SSKKGHH
KAAQEERKRPPRQSKDEMPPPPSLQGTSATLLSLLKEC---------------PPKKGHH
-----------------MPPPPSLQG---------------------------PPKKGHH
-----------------MPPPPSLQG---------------------------PPKKGHH
-----------------MPPPPSLQGTYTTLFSLLKECRSFNVYSSTTNSCAGPPKKGHH
8: 324-327
estExt_fgenesh4_pg.C_LG_IX0951 4 1 U2 GTATATGC..ACTG
AT3G52120.1 5 1 U2 GTGAGAAT..TCAG
GSVIVP00008843001 4 1 U2 GTTTGTAT..CCAG
Glyma08g16200.1 5 1 U2 GTTAAAAT..CCAG
Glyma15g42690.1 5 1 U2 GTTAAAAT..CCAG
chr3.LjT46L11.80.nc 4 1 U2 GTACAAAT..TCAG
LOC_Os09g10930.1 5 1 U2 GTACCCTT..GCAG
LOC_Os09g10930.2 5 1 U2 GTACCCTT..GCAG
9: 334-336
gw1.I.1893.1 4 1 U2 GTGGTCTC..GCAG
e_gw1.2.20313.1 4 1 U2 GTACAAAC..GCAG
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
MGDYIPPVELEKFLSTCNDAAARKAATEAAERAKIQADNVGHKLLSKMGWKEGEGLGSSR
MGDYIPPEELEKFLATCNDVAATKAAKEAAERARIQADNVGHKLLSKMGWKEGEGLGSSR
MGDYIPLEELDKFLSKCNDAAAQKATKEAAEKAKIQADNVGHKLLSKMGWKEGEGIGSSR
MGDYIPPEELEKFLAKCNDA---KAAKATAGRAKIQADNVGHRLLSKMGWKEGEGLGSGR
MGDYIPQEELEKFLSTCNDAAAQKAAREAAERAKIQADNVGHKLLSKMGWKEGEGLGSSR
MGDFIPPEELEKFLATCNDAAAQKAAREAAERAKIQADNVGHRLLSKMGWKEGEGLGGSR
MGDFIPPEELEKFLATCNDAAAQKAAMEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSR
MGDYIPLEELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSR
MGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
MGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
MGDFIPPEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
MGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
MGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
MGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQADNIGHKLLSKMGWREGEGLGSER
10: 411-411
gw1.I.1893.1 5 1 U2 GTCCCCCC..TCAG
estExt_fgenesh4_pg.C_LG_IX0951 5 1 U2 GTTCTGAG..TCAG
AT3G52120.1 6 1 U2 GTGCTTAC..ACAG
GSVIVP00008843001 5 1 U2 GTTCTACA..GCAG
Glyma08g16200.1 6 1 U2 GTGCTTTG..CCAG
Glyma15g42690.1 6 1 U2 GTGCTTTG..CCAG
chr3.LjT46L11.80.nc 5 1 U2 GTGCTGTA..CCAG
LOC_Os09g10930.1 6 1 U2 GTTAGTCC..GCAG
LOC_Os09g10930.2 6 1 U2 GTTAGTCC..GCAG
e_gw1.2.20313.1 5 1 U2 GTTTGTCC..GTAG
Pt~gw1.I.1893.1
Pt~estExt_fgenesh4_pg.C_LG_IX0951
At~AT3G52120.1
Pp~e_gw1.2.614.1
Vv~GSVIVP00008843001
Gm~Glyma08g16200.1
Gm~Glyma15g42690.1
Lj~chr3.LjT46L11.80.nc
Os~LOC_Os09g10930.1
Os~LOC_Os09g10930.2
Sb~e_gw1.2.20313.1
Zm~GRMZM2G384327_T01
Zm~GRMZM2G384327_T03
Zm~GRMZM2G384327_T02
NGISNPIMAGDVKKDHLGVGAHNPGEVTADDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
SGISNPIMAGNVKKDHLGVGAHNPGEVSPDDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
KGMADPIMAGDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY
RGMADPVQAGSVKVNNLGVGAEQPGEVTAEDDIYEQYKKRMMLGYRFRPNPLNNPRKAYY
NGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY
KGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY
KGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY
KGISDPIMAGNVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
SGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY
SGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY
RGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKSYY
RGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKSYY
RGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKSYY
RGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKSYY
11: 471-471
gw1.I.1893.1 6 0 U2 GTATTATC..GCAG
estExt_fgenesh4_pg.C_LG_IX0951 6 0 U2 GTATTATC..ACAG
AT3G52120.1 7 0 U2 GTATTTTA..ACAG
GSVIVP00008843001 6 0 U2 GTATAACC..ACAG
Glyma08g16200.1 7 0 U2 GTAAAAAA..GCAG
Glyma15g42690.1 7 0 U2 GTAAACAA..GCAG
chr3.LjT46L11.80.nc 6 0 U2 GTAAATGA..ACAG
LOC_Os09g10930.1 7 0 U2 GTATGTTG..ACAG
LOC_Os09g10930.2 7 0 U2 GTATGTTG..ACAG
e_gw1.2.20313.1 6 0 U2 GTATATTG..GCAG


3' UTR introns