SRGD	Gene ID 463	BLASTp at NCBI	n/a	n/a		Organisms Gm ,Zm ,Pp ,Lj ,Sb ,Pt ,Os ,At Gene count 14 Cintron count 18 Cintron classes U2 ,em ,im ,absent
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ MTWDDIYGDDIADVMTVPTSTMSLESAFSLAGRVIEERHQRLTSDMVEVLSCIKDWPNTL MTWDDIYGDDIADVMTVPTSTMSLESAFSLAGRVIEERHQRLTSDMVEVLSCIKDWPNTL MTWDDIYGDDIADVMTVPTSTMSLESAFSLAGRVIEERHQRLTSDMVEVLSCIKDWPNTL ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------	2: 11-11 GRMZM2G413193_T03 0 1 U2 GTAGTAGT..AAAG GRMZM2G413193_T01 0 1 U2 GTAGTAGT..AAAG GRMZM2G413193_T02 0 1 U2 GTAGTAGT..AAAG 3: 54-54 GRMZM2G413193_T03 1 1 U2 GTGAGTTA..TTAG GRMZM2G413193_T01 1 1 U2 GTGAGTTA..TTAG GRMZM2G413193_T02 1 1 U2 GTGAGTTA..TTAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ SCRTWTATKYLDCAQGGRAGPTRDGQRVVPGRAQIVSGDIFGYCSEGALHRGGEPPDVGS SCRTWTATKYLDCAQGGRAGPTRDGQRVVPGRAQIVSGDIFGYCSEGALHRGGEPPDVGS SCRTWTATKYLDCAQGGRAGPTRDGQRVVPGRAQIVSGDIFGYCSEGALHRGGEPPDVGS ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------	4: 102-102 GRMZM2G413193_T03 2 0 U2 GTATGTCC..ATAG GRMZM2G413193_T01 2 0 U2 GTATGTCC..ATAG GRMZM2G413193_T02 2 0 U2 GTATGTCC..ATAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ VGTRDSAYGPSQSLTRMGLLAIDRPSHLMVLELSKGFHWQGFRAQQSLVSLAPTPLATET VGTRDSAYGPSQSLTRMGLLAIDRPSHLMVLELSKGFHWQGFRAQQSLVSLAPTPLATET VGTRDSAYGPSQSLTRMGLLAIDRPSHLMVLELSKGFHWQGFRAQQSLVSLAPTPLATET ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	----------------YYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ RSPSPALPSSVAAMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ RSPSPALPSSVAAMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ RSPSPALPSSVAAMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQ -------------MPRYYCDYCDTHLTHDSPSVRKQHCAGYKHKANVRQYYQQFEEQQTQ ----------------------------MQPSVRKQHCAGYKHKANVRQYYQQFEEQQTQ	5: 194-194 AT4G03120.1 0 2 U2 GTATAGGG..GCAG LOC_Os02g16640.1 0 2 U2 GTGAGTAT..GCAG fgenesh1_pg.C_chr_4001097 0 2 U2 GTGAGTGC..GCAG estExt_fgenesh1_pg.C_chr_42362 0 2 U2 GTGAGTGC..GCAG GRMZM2G413193_T03 3 2 U2 GTGAGTGC..GCAG GRMZM2G413193_T01 3 2 U2 GTGAGTGC..GCAG GRMZM2G413193_T02 3 2 U2 GTGAGTGC..GCAG estExt_Genewise1_v1.C_LG_III1414 0 2 U2 GTACAACC..GCAG Glyma02g17120.1 1 2 U2 GTACATTA..GCAG Glyma02g17120.2 0 2 U2 GTACATTA..GCAG Glyma10g02680.1 0 2 U2 GTACATTA..ACAG estExt_fgenesh1_pg.C_1550066 0 2 U2 GTTAGTCT..GCAG 6: 209-209 AT4G03120.1 1 0 U2 GTAAGTTT..TCAG LOC_Os02g16640.1 1 0 U2 GTGAGTTT..GCAG fgenesh1_pg.C_chr_4001097 1 0 U2 GTTAGTAG..GCAG estExt_fgenesh1_pg.C_chr_42362 1 0 U2 GTTAGTGT..GCAG GRMZM2G413193_T03 4 0 U2 GTTAGTGT..GCAG GRMZM2G413193_T01 4 0 U2 GTTAGTGT..GCAG GRMZM2G413193_T02 4 0 U2 GTTAGTGT..GCAG estExt_Genewise1_v1.C_LG_III1414 1 0 U2 GTAAGTTC..TCAG Glyma02g17120.1 2 0 U2 GTAAGTTG..GCAG Glyma02g17120.2 1 0 U2 GTAAGTTG..GCAG Glyma10g02680.1 1 0 U2 GTAAGTTG..GCAG estExt_fgenesh1_pg.C_1550066 1 0 U2 GTGAGTCT..GTAG 7: 223-223 AT4G03120.1 2 0 U2 GTACATAA..TCAG LOC_Os02g16640.1 2 0 U2 GTATCTAT..CTAG fgenesh1_pg.C_chr_4001097 2 0 U2 GTATTTAT..CTAG estExt_fgenesh1_pg.C_chr_42362 2 0 U2 GTATTTAT..CTAG GRMZM2G413193_T03 5 0 U2 GTATTTAT..GTAG GRMZM2G413193_T01 5 0 U2 GTATTTAT..GTAG GRMZM2G413193_T02 5 0 U2 GTATTTAT..GTAG estExt_Genewise1_v1.C_LG_III1414 2 0 U2 GTACTTTT..TTAG Glyma02g17120.1 3 0 U2 GTACCATG..TCAG Glyma02g17120.2 2 0 U2 GTACCATG..TCAG Glyma10g02680.1 2 0 U2 GTACCGTG..TCAG estExt_fgenesh1_pg.C_1550066 2 0 U2 GTGAGATG..TCAG fgenesh1_pg.scaffold_267000046 0 0 U2 GTGAGAAA..TCAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	SLIDQRIKEHLGQAAAF---QQVGVAYN-HL---------M-----VPRPGG----PPLL SLIDQRIKEHLGQTGGY---QQVGAVFNQHM---------------LARPRP-----PMM SLIDQRIKEHLGQAAAF----QVGAPFNQHL---------LSFPGGVPRPRL-----PIL SLIDQRIKEHLGQAAAF----QAGAPFNQHM---------LTFPGAVARPRL-----PIL SLIDQRIKEHLGQAAAF----QAGAPFNQHM---------LAFPGAVARPRL-----PIL SLIDQRIKEHLGQAAAF----QAGAPFNQHL---------LAFPGAMARPRL-----PIL SLIDQRIKEHLGQAAAF----QAGAPFNQHL---------LAFPGAMARPRL-----PIL SLIDQRIKEHLGQAAAF----QAGAPFNQHL---------LAFPGAMARPRL-----PIL SIIDQRIKEHLGQTAAF---QQVGAAYNQHL---------M-----VQRPRL-----PVL SLIDQRIKEHLGQAAAF---QQVGVAYN-HL---------M-----VQRPNL----PPVL SLIDQRIKEHLGQAAAF---QQVGVAYN-HL---------M-----VQRPNL----PPVL SLIDQRIKEHLGQAAAF---QQVGVAYN-HL---------M-----VQRPNL----PPVL SLIDQKVKEHLGQTAAALAQQQVGGAVYSHLATLGGGYKPMAAPGLLRPPVLAAVRPPVL SLIDQKVKEHLGQTAAALAQQQVGGAVYSHLAGMGGGYKPMAASGLLRPPMLAAVRPPVL
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	PMPQPRFPMPGNVQMPGGQPLMPGMRPLMPLPRPVPGAPGEYICADSF------------ L-PPGSMPM--------------GMRPPV-LPRPMMPPQG-YMPPPGV-------PQ--- --PTPGMPL-GVPQVP-GAPLMPGVRPPI-LPAP--GIPG-YPGAPNV--------P--- --PTPGMPH-GFPQAP-GAPLMPGVRPPI-LPAP-------------------------- --PTPGMPH-GFPQ----APLMPGVRPPI-LPAP--GVPG-YPGAPPTMPQPGAPPG--- --PTPGMPH-GFPQAP-GAPLMPGIRPPI-LPAP--GKQGCY------------------ --PTPGMPH-GFPQAP-GAPLMPGIRPPI-LPAP-----G-YPGPPPTMQQPGAPPG--- --PTPGMPH-GFPQAP-GAPLMPGIRPPA------------------------------- --PTPVMPIGGN-----NAPLFPGMRPPV-LPRPMPGAPG-YMNPPMM-------PP--- --PPPRLPIPGNAQIPGSQPLMPGMRPPV-FPRP-PGAPG-YVSAPTM-------PP--- --PPPRLPIPGNAQIPGSQPLMPGMRPPV-FPRP-PGAPG-YVSAPTM-------PP--- --PPPRLPIPGNAQIPGGQPLMQGMRPPV-FPRP-PGAPG-YVSAHTM-------PP--- --PPPSGPSSGY-----GSGALPSYRPPV-VPPPGGSSNQYYNNNGPSQYSTSNGAPQYS --PPPSGPASGY-----GSGALPSYRPPV-VQPPGSGSTQYYNGPSQLQYSTSNGASQYS	8: 309-309 estExt_fgenesh1_pg.C_1550066 3 1 U2 GTATAATT..TCAG fgenesh1_pg.scaffold_267000046 1 1 U2 GTACAACT..TCAG 9: 325-325 GRMZM2G413193_T02 6 1 U2 CCCCGATT..GCAC 10: 333-333 GRMZM2G413193_T01 6 1 U2 GTAAACAG..TCAG 11: 338-338 AT4G03120.1 3 1 U2 GTAATTTC..GCAG LOC_Os02g16640.1 3 1 U2 GTAACAGA..TCAG estExt_fgenesh1_pg.C_chr_42362 3 1 U2 GTAAACAG..TCAG estExt_Genewise1_v1.C_LG_III1414 3 1 U2 GTAAACTG..CCAG Glyma02g17120.1 4 1 U2 GTGAATTT..ACAG Glyma02g17120.2 3 1 U2 GTGAATTT..ACAG Glyma10g02680.1 3 1 U2 GTGAATTT..ACAG 12: 357-357 estExt_fgenesh1_pg.C_1550066 4 0 U2 GTTAATGC..GCAG fgenesh1_pg.scaffold_267000046 2 0 U2 GTTAGTCC..GCAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	--------------------------------PDLYKLPSLLIEAFNLAWDVFMFSVSHL ---MMAPPGAP---LPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLP ---TMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPP-----TSGAPGAPIPNSGA ----------------------------------------------------------GI ---SMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPPP-----TSGVPGAPIPNSAA ------------------------------------------------------------ ---SMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPPP-----TSGVPGAPIPNSGA ------------------------------------------------------------ ---MMAPPGAP------------SLPGQMNGIPRPPTMIAQPNVPGSTAAPTPSGPPSMG ---MLPPPGAP------------QAPGQLNTIPRPPSLAPPPAVPGSTAAPASNGAPSMV ---MLPPPGAP------------QAPGQLNTIPRPPSLAPPPAVPGSTAAPASNGAPSMV ---MLPPPGAP------------QVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMV VNNSLVPQSYSSSSSGAQSQYMSSANGGQAQYQTSSGANGIPRSFFSDDEFKAFLAGRCG VNNSSVPQSYSSSSTGAQSQYVSSINGGQAQYQTSSGGSQQ--QQYSNGPTRAPIPSTYN	13: 396-396 estExt_fgenesh1_pg.C_1550066 5 1 U2 GTACCCAG..GCAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	ETSCFL---------------------SN--------------------LKKTIRSVMVY PPPPYH---------------------TN---P----------------AAPPSGNFNNP PPAMYQ---------------------TN---PPQPAGPTSGAPPPVSAPPPAAPPQAPF PEYWYT-------------------------------------------------RYLPY PPAIYQ---------------------AN---PPAPAGPTSGAP-----PAPPTAPQPAF ---LYH---------------------SL------------------------------- PPAIYQ---------------------AN---PQASAGPTSGAP-----PAPPTAPQPAF ---IYQ---------------------AN---PQASAGPTSGAP-----PAPPTAPQPAF PPVTYQ---------------------AN---Q----------------AATTSGGFDSF SSAMYQ---------------------AN---P----------------PAPSSGSYDNY SSAMYQ---------------------AN---P----------------PAPSSGSYDNY SSAMYQ---------------------AN---P----------------PAPSSGSYDNY ADSLVECLSNWKGVVEDNGNRFGTELVSNYFMVSESYTASSRRLVKIILYVEQEGSTGSV PGPAYQRCSLTRLAILLFLAFVMKCVQEN---PVAYMSSIKGTEVQY--HKGTGGFQQPF	14: 420-420 fgenesh1_pg.C_chr_4001097 3 1 U2 GTAAACAG..ATAG estExt_fgenesh1_pg.C_1550066 6 1 U2 GTAGTGTT..GTAG 15: 425-425 fgenesh1_pg.scaffold_267000046 3 2 U2 GTAGACTG..CCAG 16: 444-444 estExt_fgenesh1_pg.C_1550066 7 0 U2 GTATCTTC..CTAG 17: 465-465 estExt_fgenesh1_pg.C_1550066 8 0 U2 GTTTGTTC..AAAG
Lj~LjSGA_022586.1 At~AT4G03120.1 Os~LOC_Os02g16640.1 Sb~fgenesh1_pg.C_chr_4001097 Sb~estExt_fgenesh1_pg.C_chr_42362 Zm~GRMZM2G413193_T03 Zm~GRMZM2G413193_T01 Zm~GRMZM2G413193_T02 Pt~estExt_Genewise1_v1.C_LG_III1414 Gm~Glyma02g17120.1 Gm~Glyma02g17120.2 Gm~Glyma10g02680.1 Pp~estExt_fgenesh1_pg.C_1550066 Pp~fgenesh1_pg.scaffold_267000046	VY------GAKCLDVT-------------- NLNNPNPSAESPESNE-------------- SY------AQPPEGNH-------------- VS---------------------------- SY------ALPSEGNH-------------- ------------------------------ SY------APPSEGNH-------------- SY------APPSEGNH-------------- NVN-----AAAPEANH-------------- NAS-----AQAPEGNH-------------- NAS-----AQAPEGNH-------------- NTS-----AQAPEGNH-------------- SIKPWRFSAAVIPLNHTVSTPSTYNQGLAC SIESTV--CLRHQHTTKDWCVKDRMMRAKC
		3' UTR introns