SRGD Gene ID 407 BLASTp at NCBI n/a n/a  
OrganismsMt ,Vv ,Os ,Gm ,Zm ,Pp ,Lj ,Sb ,Pt ,At
Gene count15
Cintron count8
Cintron classesU2 ,im ,em ,absent
Home (Search) Bookmark for this page        Download data


Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_fgenesh2_kg.C_780006
Os~LOC_Os01g16010.1
Os~LOC_Os01g16010.2
Zm~GRMZM2G419085_T01
Sb~estExt_Genewise1Plus.C_chr_32159
At~AT3G18165.1
Gm~Glyma08g05590.1
Gm~Glyma08g05590.2
Gm~Glyma08g05590.3
Gm~Glyma05g34090.1
Gm~Glyma05g34090.2
Mt~AC150743_42.2
Lj~chr4.CM0042.2070.nc
Vv~GSVIVP00017780001
Pt~eugene3.00150362
 MG-----------SPDVLMIEAAPGAKEIEQAKWRNGALDDTVDALPYIDHDYADPKVKA
MASSSG-------TREVLMLEAPPA--PSGA-PWRAPPDAEAVDALPYIDGDYGDPAVKR
MASSSG-------TREVLMLEAPPA--PSGA-PWRAPPDAEAVDALPYIDGDYGDPAVKR
MASSA--------TREVLMLEAPPPSDPAAG-PWRAVPDAEAIDALPYIDGDYGDAAVKR
MASSA--------TREVLMLEAPPPSDPSAG-QWRAAPDAEAIDALPYIDGDYGDPAVKR
MATN---------NGDVLMLEATP---EAAR-PWASAANAEVIDALPYIDDDYGNPLIKS
MADGS--------SGEILMLEAPA---SYGR-S--SDSDAEIIDALPYIDDDYADPRVKL
MADGS--------SGEILMLEAPA---SYGR-S--SDSDAEIIDALPYIDDDYADPRVKL
MADGS--------SGEILMLEAPA---SYGR-S--SDSDAEIIDALPYIDDDYADPRVKL
MADGS--------NGGVLMLEAPP---SYGR-P--TGSNAEIIDALPYIDDDYADPRVKL
MADGS--------NGGVLMLEAPP---SYGR-P--TGSNAEIIDALPYIDDDYADPRVKL
MGEGRSSSSNSNSNGDVLMLEAPP---SYGR-S--SHSDAEIIDALPYIDDDYSDPRVKI
-------------MGEVLMLEAPP---SYGGLP--RSSDAEIIDALPYIDDDYGDPRVKV
MAN----------DGDILMLEAPP---QASR-P------AEFIDALPYIDDDYGHPKVKE
MATSNSA------NGDMLMLEAAP---EASR-PWSTSSNAEIIDALPYIDDDYGNPSVKA
1: 0-0
AC150743_42.2 0 0 U2 ..
Pp~estExt_fgenesh2_kg.C_780006
Os~LOC_Os01g16010.1
Os~LOC_Os01g16010.2
Zm~GRMZM2G419085_T01
Sb~estExt_Genewise1Plus.C_chr_32159
At~AT3G18165.1
Gm~Glyma08g05590.1
Gm~Glyma08g05590.2
Gm~Glyma08g05590.3
Gm~Glyma05g34090.1
Gm~Glyma05g34090.2
Mt~AC150743_42.2
Lj~chr4.CM0042.2070.nc
Vv~GSVIVP00017780001
Pt~eugene3.00150362
 EVDKMIAEEMRLSSKKPSDFLAELPPVPSINA-QDHPMLAKEFDRVRAGKAPVALDL-SR
EVDRMVEEEMRRGSRKPADFLRDLPPVPAIGF-ENHPMLAKEYERVRAGKPPATIEM-SR
EVDRMVEEEMRRGSRKPADFLRDLPPVPAIGF-ENHPMLAKEYERVRAGKPPATIEM-SR
EVDRLVEEEMRRGKRKPADFLRDLPPVPTAGF-ENHPMLSKEYERVRAGKPPFMLDM-SR
EVDRLVEEEMRRGKRKPADFLRDLPPVPTAGF-ENHPMLAKEYERVRAGKPPFMLDM-SR
EVDRLVEEEMRRSSKKPADFLKDLPPLPKFDF-KNCPVLGKEYERVRAGKPPVRIDFESR
EVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIF-QNYPMIAREYERVRAGRPPVALDR-SR
EVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIF-QNYPMIAREYERVRAGRPPVALDR-SR
EVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIF-QNYPMIAREYERVRAGRPPVALDR-SR
EVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNFQQNYPMIAREYERVRAGRPPVALDR-SR
EVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNF-QNYPMIAREYERVRAGRPPVALDR-SR
EVDRLVEEEMRRSSKKPADFLKDFPPLPSSNF-HDYPMIGREYERVRAGRPPVSLDR-SR
EVDRLVEDEMRRSSKKPADFLKDFPPLPTSNL-EGYPMIAREYERVRAGRPPVSIDR-SR
EVDRLVEDEMRRSSKKPSDFLKDLPPLPPFGF-HNHPMLAREYERVRAGKPPVALDM-SR
EVDRLVEEEMRRSSKKPSDFLKELPPVPKFTF-ENYPMLAKEYERVRAGRPPVTLDF-SR
2: 92-93
estExt_fgenesh2_kg.C_780006 0 0 U2 GTATGGTG..CCAG
LOC_Os01g16010.1 0 0 U2 GTAGATTC..CTAG
LOC_Os01g16010.2 0 0 U2 GTAGATTC..CTAG
GRMZM2G419085_T01 0 0 U2 GTACAGTT..TCAG
estExt_Genewise1Plus.C_chr_32159 0 0 U2 GTACAGTC..TCAG
AT3G18165.1 0 0 U2 GTGAATTT..GTAG
Glyma08g05590.1 0 0 U2 GTTCTTTT..GCAG
Glyma08g05590.2 0 0 U2 GTTCTTTT..GCAG
Glyma08g05590.3 0 0 U2 GTTCTTTT..GCAG
Glyma05g34090.1 0 0 U2 GTTCTACT..GCAG
Glyma05g34090.2 0 0 U2 GTTCTACT..GCAG
chr4.CM0042.2070.nc 0 0 U2 GTACTAGT..GTAG
GSVIVP00017780001 0 0 U2 GTAATTTT..TCAG
eugene3.00150362 0 0 U2 GTTAGGGT..ATAG
Pp~estExt_fgenesh2_kg.C_780006
Os~LOC_Os01g16010.1
Os~LOC_Os01g16010.2
Zm~GRMZM2G419085_T01
Sb~estExt_Genewise1Plus.C_chr_32159
At~AT3G18165.1
Gm~Glyma08g05590.1
Gm~Glyma08g05590.2
Gm~Glyma08g05590.3
Gm~Glyma05g34090.1
Gm~Glyma05g34090.2
Mt~AC150743_42.2
Lj~chr4.CM0042.2070.nc
Vv~GSVIVP00017780001
Pt~eugene3.00150362
 YG-LEPPPVNKRNDVGAWKSAVQNAKAQLQHQTLRLENLELMLNYGTTAWIVHNQHLEAF
YG-LEPPPANKRNDVAAWRQALRNAQSQLHHQIIRIENLELMLKYGVEVWKLQNRQMESV
YG-LEPPPANKRNDVAAWRQALRNAQSQLHHQIIRIENLELMLKYGVEVWKLQNRQMESV
YG-LEPPPMNKRNDVGAWRQALRNAQSQLQHQIIRIENLELMLKYGVDVWKLQNRQMESV
YG-LEPPPMNRRNDVGAWRQALRNAQSQLQHQIIRIENLELMLKYGVDVWKLQNKQMESV
YK-LEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVF
YD-LEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVY
YD-LEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVY
YD-LEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVY
YE-LEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVY
YE-LEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVY
YE-LEAPPVNKRNDETAWKLAIQRAQRLLQYQTIRMENLDLLFKHGPDAWKQHNQRLEVY
YE-LEIPPLNKRNDETAWKHALQRAQRLLQYQMMRMENIELLLKYGPDAWKQHNHRLEVY
YG-LEMPPMNKRNDETAWKHALQKAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAY
YSHLDLPAANKMNDETAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETM
3: 153-153
estExt_fgenesh2_kg.C_780006 1 2 U2 GTTCATCT..GCAG
LOC_Os01g16010.1 1 2 U2 GTAAGAGT..GCAG
LOC_Os01g16010.2 1 2 U2 GTAAGAGT..GCAG
GRMZM2G419085_T01 1 2 U2 GTAAGTCA..GCAG
estExt_Genewise1Plus.C_chr_32159 1 2 U2 GTAAGTCA..GCAG
AT3G18165.1 1 2 U2 GTAAGCAA..ACAG
chr4.CM0042.2070.nc 1 2 U2 GTATGCGA..TCAG
GSVIVP00017780001 1 2 U2 GTAATATG..GCAG
eugene3.00150362 1 2 U2 GTTAATTG..TCAG
Pp~estExt_fgenesh2_kg.C_780006
Os~LOC_Os01g16010.1
Os~LOC_Os01g16010.2
Zm~GRMZM2G419085_T01
Sb~estExt_Genewise1Plus.C_chr_32159
At~AT3G18165.1
Gm~Glyma08g05590.1
Gm~Glyma08g05590.2
Gm~Glyma08g05590.3
Gm~Glyma05g34090.1
Gm~Glyma05g34090.2
Mt~AC150743_42.2
Lj~chr4.CM0042.2070.nc
Vv~GSVIVP00017780001
Pt~eugene3.00150362
 QARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAE
LSRMQKMAVEYNEKIETVNRERKFHQQNTGGQLHALTTEWQELCQKNIAIQAACVDLQNQ
LSRMQKMAVEYNEKIETVNRERKFHQQNTGGQLHALTTEWQELCQKNIAIQAACVDLQNQ
LSRMQKMAVEYNERIENVNRERKFHQQNTGGQLHALKMEWQELCQKNIAIQAACVDLQNH
LSRMQKMAVEYNERIENVNRERKFHQQNTGGQLHALTMEWQELCQKNIAIQAACVDLQNQ
LTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQ
LSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENR
LSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENR
LSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENR
LSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENR
LSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENR
LSRMQKLAQEQNDKIEKVNRERKYHQQNTAYELNALSMQWNELCQKNIDIKVVCASVETH
LLRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSTQWNELCQKNIDINAACASVETR
LSRMQALAMEQNEKIETVNRERKYHQQNTAFELNALSAQWKELCEKNIEIRTACAKIENN
LTRTQKLAREQNEKIEAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQ
4: 181-181
estExt_fgenesh2_kg.C_780006 2 2 U2 GTTGGGCT..CCAG
LOC_Os01g16010.1 2 2 U2 GTAGGCTA..ATAG
LOC_Os01g16010.2 2 2 U2 GTAGGCTA..ATAG
GRMZM2G419085_T01 2 2 U2 GTAAGTTA..GCAG
estExt_Genewise1Plus.C_chr_32159 2 2 U2 GTAAGTTA..GCAG
AT3G18165.1 2 2 U2 GTTTGTTC..GCAG
Glyma08g05590.1 1 2 U2 GTTTCTTC..TTAG
Glyma08g05590.2 1 2 U2 GTTTCTTC..TTAG
Glyma08g05590.3 1 2 U2 GTTTCTTC..TTAG
Glyma05g34090.1 1 2 U2 GTTTCTTC..TTAG
Glyma05g34090.2 1 2 U2 GTTTCTTC..TTAG
chr4.CM0042.2070.nc 2 2 U2 GTTTGTTC..TCAG
GSVIVP00017780001 2 2 U2 GTTTGTTT..TCAG
eugene3.00150362 2 2 U2 GTCCGTCT..TCAG
5: 205-205
estExt_fgenesh2_kg.C_780006 3 0 U2 GTCACCAC..ACAG
LOC_Os01g16010.1 3 0 U2 GTAATTAT..TCAG
LOC_Os01g16010.2 3 0 U2 GTAATTAT..TCAG
GRMZM2G419085_T01 3 0 U2 GTTATAAG..TCAG
estExt_Genewise1Plus.C_chr_32159 3 0 U2 GTTATAAG..TCAG
AT3G18165.1 3 0 U2 GTGACAAC..TCAG
Glyma08g05590.1 2 0 U2 GTGATTAT..TCAG
Glyma08g05590.2 2 0 U2 GTGATTAT..TCAG
Glyma08g05590.3 2 0 U2 GTGATTAT..TCAG
Glyma05g34090.1 2 0 U2 GTGATTAT..TCAG
Glyma05g34090.2 2 0 U2 GTGATTAT..TCAG
chr4.CM0042.2070.nc 3 0 U2 GTGAATAT..TCAG
GSVIVP00017780001 3 0 U2 GTTATTTA..CCAG
eugene3.00150362 3 0 U2 GTGATTTT..TCAG
Pp~estExt_fgenesh2_kg.C_780006
Os~LOC_Os01g16010.1
Os~LOC_Os01g16010.2
Zm~GRMZM2G419085_T01
Sb~estExt_Genewise1Plus.C_chr_32159
At~AT3G18165.1
Gm~Glyma08g05590.1
Gm~Glyma08g05590.2
Gm~Glyma08g05590.3
Gm~Glyma05g34090.1
Gm~Glyma05g34090.2
Mt~AC150743_42.2
Lj~chr4.CM0042.2070.nc
Vv~GSVIVP00017780001
Pt~eugene3.00150362
 VLKLREEAEKKGIDLTQPPQ---------
IDQLKLGAKELGMPIDDSTGTNQQASSAI
IDQLKLGAKELGMPIDDSTGTNQQASSAI
IDQLKLEAKELGMPMDDNSGTDPQAS---
IDQLKLEAKELGMPMDDNNGTNSQAS---
IDSFKKEAAERGWNLEEKLENVEPLQMQ-
INELKREAAERGWNLGAVTENDQLANSEL
INELKREAAER-LELGSCNRK--------
INELKREAAER------------------
INELKRGAAERGWNLEAVTENGQLAKSEL
INELKRGAAERGWNLEAVTENGQLAKSEL
LNELRREAAERGWNLDAITENGQLANSES
INELKREAAERGWNLDAISENGQLANSES
IEELRREAAERGWNLDANIDNGSLSHSEQ
IEELKRESSERGWNVEANIENGSLLHS--
6: 249-249
estExt_fgenesh2_kg.C_780006 4 2 U2 GTGAGCAG..GCAG
LOC_Os01g16010.1 4 2 U2 GTACTCCC..ACAG
LOC_Os01g16010.2 4 2 U2 GTACTCCC..ACAG
GRMZM2G419085_T01 4 2 U2 GTACGTGT..ACAG
estExt_Genewise1Plus.C_chr_32159 4 2 U2 GTACGTGC..ACAG
AT3G18165.1 4 2 U2 GTGAGGAA..TCAG
Glyma08g05590.1 3 2 U2 GTGACTAC..TCAG
Glyma08g05590.2 3 2 U2 GTGACTAC..AGAG
Glyma05g34090.1 3 2 U2 GTGACTAC..TCAG
Glyma05g34090.2 3 2 U2 GTGACTAC..TCAG
chr4.CM0042.2070.nc 4 2 U2 GTGAGACT..TCAG
GSVIVP00017780001 4 2 U2 GTACTTTT..TCAG
eugene3.00150362 4 2 U2 GTGATATA..TCAG


3' UTR introns