SRGD Gene ID 401 BLASTp at NCBI n/a n/a  
OrganismsAt ,Lj ,Vv ,Sb ,Pt ,Os ,Gm ,Zm
Gene count15
Cintron count7
Cintron classesU2 ,em ,im ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
----MASSIAMSLRSLAATDAFLPKPSPS---SAPFLLLLSPSTPRLRLHLHLRSTRRLP
----MASSVAVSLRALAAAP--LPKSSPA--TSCPFFVLLA--PALPRRLLRLRSARRLP
----MASSLAVSLRALAAAS--LPKPSPAPAPSSPFLVLLA--PALPRRLLRLRSARRLP
---MASSIVTSSLKPLAMAD--SSSSTIF---SHPSISSTISSSRIRSSSVSLLT-GRIN
---MTSSVLTPSLKLLAMTN--SSSSTLF---CIPSIFNISS-SESHRFNFSLSS-RPVN
----MSITTMPAFKFLTVAE-----SCLL---SQPSLFS----SKTRYPILSNSL-KTLK
-MSMMSLTTVAAFKSLTMAE-----SCLL---SLPSLFY----AKNNTLSLSIPT-KPLN
MPMSLSLSTVPAFNSLTMAE-----SCLL---SLPSLFY----AKNKTLSLSIPT-NPLN
----------MSITSLTMAE-----SCLL---SSPSSLF----HTKTKPSLFTPPSKPLT
----MSITSSTSFKSLTMAE-----SCLL---SSPSSLF----NNKTKPSLFSPPSKPLT
----MSITSSTSFKSLTMAE-----SCLL---SSPSSLF----NNKTKPSLFSPPSKPLT
----MSAASAFTFKPLLMAE-----TCLC---SLPSTFA----SKPPLKSLPISQ-RPSK
-----------------MAE-----TCIC---SFPSIFT----SKPPLKPLPISH-RPIK
----MSSATHHLLKPFSIPN-----GSPI---SLPTIFS----TKTPHSYLPIPPHKPIK
-----------------MAE-----SCLT---SVPTTLFT---TKTPHPLLSLPP-KPVR
2: 3-3
AT4G24770.1 0 0 U2 ..
AT5G50250.1 0 0 U2 ..
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
LAPLAASDSFESASSSSAAALDFAEPGAAEESDVPEESDQEEEGYAP-------------
LAPLAASDSAFE-----------SSVGVNYAEPD--DSEKDKEVELF-------------
LAPLAASASDSV--------------GVDYAEPA--ESEQEEEEA---------------
LP-LSFSRVSLS---LKTKTHLKKSPFVSFVAQTSDWAEEGGEGSVAV-----EETE---
LT-LS----------LKSKTLRNSSPVVTFVSQTSNWAEEEEGE----------------
LQ-LPCSNSSPF--SPSLLSTTHRSPLLTFVAQTSDWAQQEEEGGAA-------------
LH-LPCSNSSLF---PLTTKTTRHSSLLTFVAQTSDWAKEEEEEETS-------------
LQ-FPCSNSSLF---PLTTKTTRHSSLLTFVAQTSGWAKEGEEEEAA-------------
LQ-FSCLNSSVS---LSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLA-------------
LQ-FSCINSSVS---LSLAARAHRSPLVTRVAQTSDWAQQEEDDTATF-----QDEEQ--
LQ-FSCINSSVS---LSLAARAHRSPLVTRVAQTSDWAQQEEDDTATF-----QDEEQ--
LQ-LSYSHSLSP---FSLKPKTHLSLTIPFVTQTSDWAQQGEEDNTTITLTESEQEEQGE
LQ-LSYSHSLST---LSVKPKTHLSLTIPFVAQTSDWAQQEEENNTTI------------
LL-LSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVII-----EEEQEEK
LFHLSCSCSSSW---VSLKTKTSPTTLVPFVAQTSDWAQQEEEEEKG-------------
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
----------------EAEEEA---------EADEEVEEEAVEASAEVAEEAEDVEEVGE
-------------GSGDDEGAG---------ELVD---DHSVEVSAAVEDEVEEEVGE--
-----------------FATEE---------DEGA--EDDAVEASAAVEDEEVGE-----
------NSLESQDVSEGDESEG---------DASEGDVSEGDESEGDVSEGAVSERAE--
--------------------DG---------SIGG----TSVTVDESFESEDGVG-----
-----------------WENEG---------EPTW---------ANEDSDETEGGEEVVA
-----------------WENQG---------DTAW----------GTEEGGHEEGG----
-----------------WENQG---------DTAW----GTEEGGDDIEDGGEGG-----
---------ETEAGLESWEPNG---------EDAG-----------------DES-----
------GLSETQAGLSSWEPNG---------EDAG-----------------EES-----
------GLSETQAGLSSWEPNG---------EDAG-----------------EES-----
SNWVNEESNDFEGKVPEWEAEG---------EDAA----ATEAIRGEGESGDEEG-----
----------TLTEVSDWEAEG---------EDAA--ASETEAVRGEGERGDEEG-----
VTWENEEVEGPDAQASDWESEG---------EGAV---TEAISDDGVVDDGEDS------
--------------GLTWDSEGGEEIEASGSEEAW---EGEVGEDGEESEGSEDT-----
3: 132-132
estExt_fgenesh4_pm.C_LG_XV0240 0 2 U2 GTCAGAAC..GTAG
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
YV-EPPEEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTV
YV-EPPEEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTV
YV-EPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTV
FP-EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV
FP-EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV
SA-EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA
FA-EKAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTL
FAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTI
FV-EPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTV
FA-EPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTV
FA-EPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTV
FV-EPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTV
FV-EPPEEAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTV
YS-EPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTV
YS-EPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTV
4: 218-218
LOC_Os09g39180.1 0 0 U2 GTGTGACC..TCAG
GRMZM2G011129_T01 0 0 U2 GTGACGTC..GCAG
Sb02g011330 0 0 U2 GTGACGTC..GCAG
chr4.CM0173.30.nd 0 0 U2 GTTAGTTC..TCAG
Glyma05g02800.1 0 0 U2 GTGAGTGC..TCAG
Glyma17g13470.1 0 0 U2 GTGAGTCA..TCAG
Glyma06g18470.1 0 0 U2 GTCAGAAA..TTAG
Glyma04g36420.1 0 0 U2 GTCAGAGA..TTAG
Glyma04g36420.2 0 0 U2 GTCAGAGA..TTAG
eugene3.00120829 0 0 U2 GTAAATAA..GTAG
estExt_fgenesh4_pm.C_LG_XV0240 1 0 U2 GTAAATAA..GTAG
GSVIVP00015937001 0 0 U2 GTATGGAG..GCAG
GSVIVP00020623001 0 0 U2 GTAAAATT..GTAG
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
EEAEKAVEMFHRYDVDGRLLTVNKAAPRGARVERPP---RQFG-------PSFRIYVGNL
EEAEKAVEMFHRYDVNGRLLTVNKAAPRGSRVDRPP---RQSG-------PSLRIYVGNL
EEADKAVEMLHRYDVNGRLLTVNKAAPRGSRVDRPP---RQSG-------PSLRIYVGNL
DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAP---RVYE-------PAFRVYVGNL
EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQP---RVYD-------AAFRIYVGNL
EDLEKALNKFSGYELDGRVLTVNKATPKEARPERPP---RTFGSGSGSRDSGLSVYVGNL
EELKKAVEMFSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFS-------SGLRVYVGNL
EELEKAVKMFSGYELNGRVLTVNKAAPKGAQPERPP---RPPQ--------SFRVYVGNL
EEAESAVEKFNRYDIDGRLLTVNKASPRGTRPERPP-PRRSFE-------SSLSIYVGNL
EEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPP-PRHSFE-------PSLSIYVGNL
EEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPP-PRHSFE-------PSLSIYVGNL
EESEKAVEMLHRYDLDGRFLTVNKAAPRGSRPERPP---RVSE-------PGYRIYVGNL
EESDKAIEMFNRYNLDGRLLTVNKAAPRGSRPERPP---RVSE-------PSYRIYVGNL
EEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPP---RVFE-------PAFRMYVGNL
EEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPP---QAFE-------PSFRIYVGNL
5: 252-252
LOC_Os09g39180.1 1 0 U2 GTGAGTCT..ATAG
GRMZM2G011129_T01 1 0 U2 GTGAGTTT..ACAG
Sb02g011330 1 0 U2 GTGAGTGT..ACAG
chr4.CM0173.30.nd 1 0 U2 GTAAGTTG..ACAG
Glyma05g02800.1 1 0 U2 GTAAGTTG..ACAG
Glyma17g13470.1 1 0 U2 GTAAGTTG..ACAG
Glyma06g18470.1 1 0 U2 GTAAGTTG..ACAG
Glyma04g36420.1 1 0 U2 GTAAGTTT..ACAG
Glyma04g36420.2 1 0 U2 GTAAGTTT..ACAG
eugene3.00120829 1 0 U2 GTAAGTTT..ACAG
estExt_fgenesh4_pm.C_LG_XV0240 2 0 U2 GTAAGTTT..ACAG
GSVIVP00015937001 1 0 U2 GTGAGTTC..ACAG
GSVIVP00020623001 1 0 U2 GTAAGTTG..ACAG
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
PWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLD
PWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLD
PWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAALDGQSLD
PWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE
PWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLE
PWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLD
PWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLD
PWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLD
PWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLD
PWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQVLL
PWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLD
PWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLD
PWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELD
PWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLD
PWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLD
6: 356-356
LOC_Os09g39180.1 2 0 U2 GTAAGTGT..ACAG
GRMZM2G011129_T01 2 0 U2 GTCAGTCT..GCAG
Sb02g011330 2 0 U2 GTCAGTCT..ACAG
chr4.CM0173.30.nd 2 0 U2 GTATTACA..GCAG
Glyma05g02800.1 2 0 U2 GTAACACA..GCAG
Glyma17g13470.1 2 0 U2 GTAACACA..GCAG
Glyma06g18470.1 2 0 U2 GTATTACT..TCAG
Glyma04g36420.2 2 0 U2 GTATTACT..TCAG
eugene3.00120829 2 0 U2 GTATGAGA..GCAG
estExt_fgenesh4_pm.C_LG_XV0240 3 0 U2 GTATGACT..GCAG
GSVIVP00015937001 2 0 U2 GTACTTTT..GCAG
GSVIVP00020623001 2 0 U2 GTTATATG..GCAG
Os~LOC_Os09g39180.1
Zm~GRMZM2G011129_T01
Sb~Sb02g011330
At~AT4G24770.1
At~AT5G50250.1
Lj~chr4.CM0173.30.nd
Gm~Glyma05g02800.1
Gm~Glyma17g13470.1
Gm~Glyma06g18470.1
Gm~Glyma04g36420.1
Gm~Glyma04g36420.2
Pt~eugene3.00120829
Pt~estExt_fgenesh4_pm.C_LG_XV0240
Vv~GSVIVP00015937001
Vv~GSVIVP00020623001
GRALRVNV--------AEERP-PRRGF---------
GRALRVNV--------AEERP--RRGF---------
GRALRVNV--------AEERP--RRSF---------
GRAIRVNV--------AEERP-PRRGY---------
GRAIKVNV--------AEERT-RR------------
GRTIRVSV--------AEGRSGGRSSF---------
GRAIRVNV--------AQDRP-SRSSF---------
GRAIRVNV--------AAQRP-KPSSF---------
GRAIKVSV--------AEDRP-RRGSF---------
KFFVKLSMLPALIIKYAENWK-GTGLSWAMLMRKVV
GRPIRVSV--------AEDRP-RRGSF---------
GRPIRVNV--------AEERP--RRTF---------
GRAIRVNV--------AAERP-RRSSF---------
GRTIRVNV--------AEERP-RRSAF---------
GRAIRVNV--------AEERP-RRGSY---------