SRGD	Gene ID 345	BLASTp at NCBI	n/a	n/a		Organisms At ,Pp ,Vv ,Os ,Gm ,Zm ,Lj ,Sb ,Pt Gene count 16 Cintron count 33 Cintron classes U2 ,im ,em ,absent
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	MAKSTGKPRAASPSVTTESSSYTGSSSASG---------SRSRSQSSSSS---------- MAKTVGKPRAASPSVTTGSSSYTGSSSASG---------SRSRSPSSSSS---------- MAKLGGKSKAASPSVTSGSSSYSGSSSASG---------SRSRSRSSSSS---------- MAKPRRGRSASRSSSGSSSRSPSRSASSGSGS---SRSRSRSRSFSSSSSPSRSRSPPAA MAKPRRGRSASRSSSGSSSRSPSRSASSGSGS---SRSRSRSRSFSSSSSPSRSRSPPAA MAKPRRGRSASRSSSGSSSRSPSHSVSSGSVS---SRSRSRSRSFSSSSSQSR------- MAKPRRGRSASRSTSGSSSRSPSHSVSSGSVS-------SRSRSFSSSSSQSRSRSPPPA MAKPRRGRSASRSSSGSSSRSLSHSVSSGSVS---SRSRSRSRSFSSSSSQSRSRSPPQA MAKPRRGRSASRSSSGSSSRSLSHSVSSGSVS---SRSRSRSRSFSSSSSQSRSRSPPQA MAKPSRGRRSP-SVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSR------- ------------------------------------------------------------ MAKPGRGRRSH---SGSVSGSSSRSSSPSD-----SRSSSRSRSVSRSRSPSRSRSSSPS MAKPGRGRRSP---SGSVSGSSSRSSSPSD-----SRSSSRSRSLSRSRSPSRSRSSSPS ------------------------------------------------------------ MAKPGRGRPSPPSGSASGSSSRSRSRSYSGSD---SRSSSRSRSPSRSRSFSSSSSQS-- MAKPTRGRPTSRSGSGSGSSSRSRSYSGSD-----SRSSSRSRSVSRSRSRSRSLSSSSS	2: 0-0 AT1G16610.1 0 0 U2 ..
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	-----GSETSRSRSPPAKT----------------------RKLRSSIPESTVLHVGFLT -----GSEVSGSRSPPAKTSGVSGAKKIRSSSPPPKRISPAKKLRTPTPESTVLHVGCLT -----GSETSRSRSPPAKSSD--VAKKTRASPPPPTKSSAPKKLRTPTPESTVLHVGCLT KASSPGARRGRSPSSPAKRGS--PSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLS KASSPGARRGRSPSSPAKRGS--PSKKGRSPSPPPPKKASPPRKASPAPESVVLHIDHLS ----------SRSPPPAKRGK------------------------ASPAESAVLCIDHLS KRSSPGARKGRSPSPPPKKGS--PSKKVRSPSPPPKK-ASPPRKASPPAESVVLCIDHLS KRSSPGARKGRSPSPPPKKGS--PSKKVRSPSPPLKK-ASPPRKVSPPAESAVLCIDHLS KRSSPGARKGRSPSPPPKKGS--PSKKVRSPSPPLKK-ASPPRKVSPPAESAVLCIDHLS -----SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLS -------------------------------------------KPSPTRESLVLHVEKLS SSSPSRSSRSRSPPPQRRRSPADAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLS SSSSSRSSRSRSPPPQRRRSPADATRRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLS ------------------------------------------------------------ -----RSVSSRSRSVSPKRKSPEVAKRGRSPPPQSKRTSPPPRKVSPIRESLVLHIGSLS SPSR-SASSGSRSPPPRKRSPAEGARRGRSPPPQSKKVSPPPRKASPIRESLVLHVDSLT	3: 61-61 LOC_Os01g72890.1 0 2 U2 GTGAGACC..GCAG LOC_Os01g72890.2 0 2 U2 GTGAGACC..GCAG GRMZM2G133926_T01 0 2 U2 GTGAGGCC..CCAG GRMZM2G060540_T01 0 2 U2 GTGAGGCT..CCAG GRMZM2G060540_T02 0 2 U2 GTGAGGCT..CCAG 4: 77-79 fgenesh1_pg.scaffold_157000058 0 2 U2 GTAGTTTT..ACAG estExt_fgenesh1_pm.C_350034 0 2 U2 GTAGTCTG..GCAG estExt_fgenesh1_pg.C_1180104 1 2 U2 GTAATCTA..GCAG fgenesh1_pg.C_chr_3004174 0 2 U2 GTGAGGCT..TCAG Glyma08g18310.1 0 2 U2 GTAACGCT..GTAG Glyma15g40710.1 0 2 U2 GTACTGCT..GTAG GSVIVP00025760001 0 2 U2 GTTCTTCT..ACAG estExt_fgenesh4_pg.C_LG_XI1221 0 2 U2 GTGAATTC..AAAG 5: 100-101 estExt_fgenesh1_pm.C_350034 1 2 U2 GTAAGGAA..GCAG estExt_fgenesh1_pg.C_1180104 2 2 U2 GTAAGTAC..ACAG LOC_Os01g72890.1 1 2 U2 GTTCAGTT..TCAG LOC_Os01g72890.2 1 2 U2 GTTCAGTT..TCAG GRMZM2G133926_T01 1 2 U2 GTATATAA..TCAG GRMZM2G060540_T01 1 2 U2 GTATATAC..TCAG GRMZM2G060540_T02 1 2 U2 GTATATAC..TCAG Glyma08g18310.1 1 2 U2 GTAGTGTG..TCAG Glyma15g40710.1 1 2 U2 GTAGTGTG..TCAG GSVIVP00025760001 1 2 U2 GTAACTCA..TCAG estExt_fgenesh4_pg.C_LG_XI1221 1 2 U2 GTAAATTT..TCAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	RNVSEAHVKEIFVVKSSSFLFEVFSQQFWTRVTFKVNLPKGYGYVEFKTRVDAEKALAHM RNVNETHLREIFGNYGEIVHVELAMDRT-------VNLPKGYGYVEFKTRVDAEKALAHM RNVNEAHLKEIFGLYGEIVHVELAMDRT-------VNLPKGYGYVEFKRRGDAEKALAHM RNVNEAHLKEIFGNFGEVVNVELSMDRM-------VNLPRGYGYIEFKKRTDAEKALLYM RNVNEAHLKEIFGNFGEVVNVELSMDRM-------VNLPRGYGYIEFKKRTDAEKALLYM RNVNEAHLKEIFGNFGEIVNVELSMDRM-------VNLPRGYGYIEFKKRADAEKALLYM RNVNEAHLKEIFGNFGEVVNVELSMDRM-------VNLPRGYGYIEFKKRADAEKALLYM RNVNEAHLKEIFGNFGEVVNVELSMDRM-------VNLPRGYGYIEFKKRADAEKALLHM RNVNEAHLKEIFGNFGEVVNVELSMDRM-------VNLPRGYGYIEFKKRADAEKALLHM RNVNEAHLKEIFGNFGEVIHVEIAMDRA-------VNLPRGHGYVEFKARADAEKAQLYM RNVNEGHLKEIFSNYGEVVSVELAMDRI-------VNLPKRIAYVPFRARGDAKKALLYM RNVNEGHLKEIFSNFGEVISVELAMDRT-------VNLPKGYGYVQFKTRGEAEKALLYM RNVNEGHLKEIFSNFGEVISVELAMDRT-------VNLPKGYGYVQFKTRGDAEKALLYM -------------NYGEVVSVELAMDRI-------VNLPKGYAYVQFKARGDAEKALLYM RNVNEGHLKEIFSNFGEVVHVELAMDRT-------VNLPKGYGYVEFKTRSDAEKAQLYM RNVNEGHLREIFSNFGEVVHVELAMDRT-------VNLPKGFGYVEFKTRADAEKALLYM	6: 131-131 fgenesh1_pg.scaffold_157000058 1 1 U2 GTAAGTAT..GAAG estExt_fgenesh1_pm.C_350034 2 1 U2 GTATGTTT..ACAG estExt_fgenesh1_pg.C_1180104 3 1 U2 GTACGTAT..GCAG LOC_Os01g72890.1 2 1 U2 GTGAGTTT..TCAG LOC_Os01g72890.2 2 1 U2 GTGAGTTT..TCAG fgenesh1_pg.C_chr_3004174 1 1 U2 GTGAGCTT..TCAG GRMZM2G133926_T01 2 1 U2 GTGAGTTT..TCAG GRMZM2G060540_T01 2 1 U2 GTGAGTTT..TCAG GRMZM2G060540_T02 2 1 U2 GTGAGTTT..TCAG Glyma08g18310.1 2 1 U2 GTATGCTT..TCAG Glyma15g40710.1 2 1 U2 GTATGTTT..TCAG GSVIVP00025760001 2 1 U2 GTATGTTT..CTAG estExt_fgenesh4_pg.C_LG_XI1221 2 1 U2 GTGAGTTC..TCAG 7: 147-147 estExt_fgenesh1_pm.C_350034 3 0 U2 GTAAGGCA..ACAG estExt_fgenesh1_pg.C_1180104 4 0 U2 GTAAGTAG..ACAG LOC_Os01g72890.1 3 0 U2 GTAAGTTA..TTAG LOC_Os01g72890.2 3 0 U2 GTAAGTTA..TTAG fgenesh1_pg.C_chr_3004174 2 0 U2 GTAAGTGA..TTAG GRMZM2G133926_T01 3 0 U2 GTATTGAA..TTAG GRMZM2G060540_T01 3 0 U2 GTAAGTGA..TTAG GRMZM2G060540_T02 3 0 U2 GTAAGTGA..TTAG Glyma08g18310.1 3 0 U2 GTAAGTTT..CCAG Glyma15g40710.1 3 0 U2 GTAAGTTT..CCAG GSVIVP00025760001 3 0 U2 GTAAGTTT..GTAG estExt_fgenesh4_pg.C_LG_XI1221 3 0 U2 GTAAGTCT..GCAG 8: 154-154 fgenesh1_pg.scaffold_157000058 2 0 U2 GTACAAAT..TCAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	DGGQIDGNIVSAQVLLVPRKKASALPLKRGVSPPPKRELSG-----------------RD DGGQIDGNIVSAQFILVPRKKASPPL-KRGVSPPPKREIMG-----------------RD DGGQIDGNVVSAQFILVPRRKPTPPPVKRQVSPAPKREIVG-----------------RE DGGQIDGNVVKLRFTLAPRQRASSPM--KAPPPPPKRDVPHNEKGAPSAEKD--VQQRRE DGGQIDGNVVKLRFTLAPRQRASSPM--KAPPPPPKRDVPHNEKGAPSAEKD--VQQRRE DGGQIDGNVVKLRFTLQPRQRAASPM--KAPPPPPKRDAPQIEKGVTSAEKD-AQQRPRE DGGQIDGNVVKLRFTLQPRQRAVSPM--KAPPPPPKRDVAQIEKGLSSAEKD-AQQRPRE DGGQIDGNIVKLRFTLQPRQRAASPV--KAPPPPPKRDALQIEKGVSSAEKD-AQQRPKE DGGQIDGNIVKLRFTLQPRQRAASPV--KAPPPPPKRDALQIEKGVSSAEKD-AQQRPKE DGAQIDGKVVKATFTLPPRQKVSSPP--KPVSAAPKRDAPKSDNAAADAEKDGGPRRPRE E----------------------------------------------------------- DGAQIDGNVIKARFTLPPRQKVSPPP--KTSAVAPKREIPRTDNASADVDKD-GPKRQRE DGAQIDGNVIKARFTLPPRQKVSPPP--KASAVAPKRDTPRADNASADVDKD-GPKRQRE DGAQIDGNVIKARFTLPPRQKVSPPP--KPSALAPKREAPRTDNAGADIEKD-GPKRQRE DGAQIDGNVVRAKFTLPQRQKISSPP--KAVATASKRDGPKTDNVGADVEKD-GPKRQRE DGAQIDGNVVRAKFTLPPRQKLSPPP--KPIAAAPKRDAPKTDNASADAEKD-GPKRQRE	9: 181-181 fgenesh1_pg.scaffold_157000058 3 0 U2 GTTTGTGA..GCAG estExt_fgenesh1_pm.C_350034 4 0 U2 GTTTGTGT..GCAG estExt_fgenesh1_pg.C_1180104 5 0 U2 GTATGTGA..GCAG LOC_Os01g72890.1 4 0 U2 GTATGTTT..GCAG LOC_Os01g72890.2 4 0 U2 GTATGTTT..GCAG fgenesh1_pg.C_chr_3004174 3 0 U2 GTATGCAT..TCAG GRMZM2G133926_T01 4 0 U2 GTATGCAT..ACAG GRMZM2G060540_T01 4 0 U2 GTATGCAT..CCAG GRMZM2G060540_T02 4 0 U2 GTATGCAT..CCAG Glyma08g18310.1 4 0 U2 GTAGGTTT..GCAG Glyma15g40710.1 4 0 U2 GTAGGTTT..GCAG GSVIVP00025760001 4 0 U2 GTATGGTT..GCAG estExt_fgenesh4_pg.C_LG_XI1221 4 0 U2 GTAGGTCA..GCAG 10: 239-239 LOC_Os01g72890.1 5 1 U2 GTAAGCTT..ACAG LOC_Os01g72890.2 5 1 U2 GTAAGCTT..ACAG fgenesh1_pg.C_chr_3004174 4 1 U2 GTAAGCTT..GCAG GRMZM2G133926_T01 5 1 U2 GTAAGCTT..GTAG GRMZM2G060540_T01 5 1 U2 GTACGCTT..GCAG GRMZM2G060540_T02 5 1 U2 GTACGCTT..GCAG Glyma08g18310.1 5 1 U2 GTATATAT..CCAG Glyma15g40710.1 5 1 U2 GTATATAT..CCAG GSVIVP00025760001 5 1 U2 GTACTCTT..TCAG estExt_fgenesh4_pg.C_LG_XI1221 5 1 U2 GTATGGCT..TCAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	VPPRDGLKDGPRRLDFP---HVLTLQQIYNRISLYQVSSPENTRQ------------PCR GPPRDGLKDGSRRRDSPPPRRGRSP-------------SPPPRRRSVSPRRRMADSPPRR VPPRDGVKDGLRRRDSPPIRRGRSP-------------SPPPRRRSGSPRRRMPDSPPRR PSPRRKPASPPRKRTPP-NRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRR PSPRRKPASPPRKRTPP-NRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRR SSPRRKPASPPRKRSP--NRRAESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGDTPPRR SSPRRKPASPPRKRSP--NRRAESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGGTPPRR SSPRRKPASPLRKRSP--NRRAESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGDT-PRR SSPRRKPASPLRKRSP--NRRAESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGDT-PRR TSPQRKTGLSPRRRSPL-PRRGLSPRR-------RSPDSP-HRRRPGSPIRRRGDTPPRR ------------------------------------------------------------ SSPRRKPPPSPRRRSPV-PRRAGSPRRP--DSPRRRADSP-VRRRVDSPYRRGGDTPPRR SSPRRKPPPSPRRRSPV-PRRAGSPRRP--DSPRRRADSP-VRRRLDSPYRRGGDTPPRR SSPRRKPPPSPRRRSPV-PRRVGSPRRP--DSPRRRVDSP-VRRRLDSPYRRGGDTPPRR ASPRRKPPSPPRRRSPAPGRRGGSPRR--------QLDSP--QRRLESPY-RRGETPPRR PSPHRKPLASPRRRSPV-ARRGGSPRRQLDSPPRRRADSP-GRRRVESPY-RRGETPPRR	11: 254-254 fgenesh1_pg.scaffold_157000058 4 1 U2 GTAAGTGG..GCAG estExt_fgenesh1_pm.C_350034 5 1 U2 GTAAGTGT..GCAG estExt_fgenesh1_pg.C_1180104 6 1 U2 GTAAGTGT..TCAG 12: 284-284 GSVIVP00025760001 6 1 U2 GTGGAGAG..CGAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	TTALSASMQKAVC------WVENSVKAVQRVVRVIGLLKNQLYRSMIKSP--PSGRRVRS RPALASP-RRRSP-SPFRRRRRSPIRSPPRRIRGSPVGRQRSPPPPYRRRSPPPGRRLRS RAPAVSPRRRRSP--SPFRRRRSPIRSPPRRIRGSPVRRPRSPPPYRRRS-PPPGRRARS RPG--SPVRRRSP-SPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRS RPG--SPVRRRSP-SPPPRRRRSPMRPSPRRLRGSPSPRRRSPGPIRRRSPPPPPRRPRS RPL--SPVRRRSP-SPPPRRHRSPMRPSPRRGRGSPSPRRRSPGPLRRRGRGPPLRRGRS RPL--SPVRRRSP-S-PPRRHRSPMRPSPRRGRGSPSPRRRSPGPLRRRS--PPPRRLRS RPP--SPVRRRSP-SPPPRRHRSPMRLSPRRGRGSPSPRRRSPGPLRRRS--PPPRRLRS RPP--SPVRRRSP-SPPPRRHRSPMRLSPRRGRGSPSPRRRSPGPLRRRS--PPPRRLRS RPA--SPSRGRSPSSPPPRRYRSPPRGSPRRIRGSPV-RRRSPLPLRRRS--PPPRRLRS ------------------------------------------------------------ RPV--SPGRGRSP-S-PPRRLRSPARLSPRRMRGSPGRRRSPPPPPRRRS---PPRRPRS RPV--SPGRGRSP-S-PPRRLRSPARLSPRRIRGSPGRRRSPPPPPRRRS---PPRRPRS RPV--SPGRGRSP-S-PPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRS--PPPRRARS RPA--SPSRGRSP-LSPPRRHRSPARASPRRMRGSPV-RRRSPPPPRRRS---PPRRARS RPA--SPARGRSP-SSPPRRYRSPLRASPRRMRGSPV-RRRSPPP--RRR--TPPRRARS	13: 309-309 fgenesh1_pg.scaffold_157000058 5 0 U2 GTAAGTAA..CCAG 14: 324-324 estExt_fgenesh1_pm.C_350034 6 2 U2 GTGTGCAG..ACAG estExt_fgenesh1_pg.C_1180104 7 2 U2 GTATGGTG..TCAG LOC_Os01g72890.1 6 2 U2 GTGAGCAA..ACAG LOC_Os01g72890.2 6 2 U2 GTGAGCAA..ACAG fgenesh1_pg.C_chr_3004174 5 2 U2 GTAATCAA..CCAG GRMZM2G133926_T01 6 2 U2 GTAATCAA..CCAG GRMZM2G060540_T01 6 2 U2 GTAATCAA..CCAG GRMZM2G060540_T02 6 2 U2 GTAATCAA..CCAG Glyma08g18310.1 6 2 U2 GTTGGCTT..GTAG Glyma15g40710.1 6 2 U2 GTAGGCTT..GTAG GSVIVP00025760001 7 2 U2 GTCAGTGA..GAAG estExt_fgenesh4_pg.C_LG_XI1221 6 2 U2 GTAGGTAG..CTAG 15: 346-348 fgenesh1_pg.scaffold_157000058 6 2 U2 GTGTCTTA..GCAG estExt_fgenesh1_pm.C_350034 7 2 U2 GTAAGTGA..TCAG estExt_fgenesh1_pg.C_1180104 8 2 U2 GTAATTGA..ACAG LOC_Os01g72890.1 7 2 U2 GTGAGTCA..CCAG LOC_Os01g72890.2 7 2 U2 GTGAGTCA..CCAG fgenesh1_pg.C_chr_3004174 6 2 U2 GTGAGTTT..GCAG GRMZM2G133926_T01 7 2 U2 GTGAGTTT..CTAG GRMZM2G060540_T01 7 2 U2 GTGAGTTT..GTAG GRMZM2G060540_T02 7 2 U2 GTGAGTTT..GTAG Glyma08g18310.1 7 2 U2 GTAATTTT..CCAG Glyma15g40710.1 7 2 U2 GTAATTTT..GCAG GSVIVP00025760001 8 2 U2 GTAATTGA..TCAG estExt_fgenesh4_pg.C_LG_XI1221 7 2 U2 GTAATTAT..ACAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	P--PPRRSPPRHRTSRSPPPRRPFRSRSRSHSAPS------------------RAIANS- P--PPRRSPPRRRTSRSPPPRRPLRSRSRSRSPPRR-----------ARSPVGKRRKS-- P--PPRRSPPRRRASRSPPPRRPLRSRSRSRSAPRRYINFHSNSFSWARSPINKRKRS-- P--PGRRLPPPRRHSRSPPPRRPPHSRSRSISPRT------------RRGPPLRRGRSD- P--PGRRLPPPRRHSRSPPPRRPPHSRSRSISPRT-------------RGPPLRRGRSD- D--------SSYSRSPTPPPRKVSVATDMVFVASN------------TKGQEGYQGAAAL P--P-RRPPPPRRYSRS-PPRRPLRSR--SISPRR------------GRGPLLRRGRSG- P--P-RRPPPPRRFSRS-PPRRPLRSRSRSISPRR------------GRGPPLRRGRSD- P--P-RRPPPPRRFSRS-PPRRPLRSRSRSISPRR------------GRGPPLRRGRSD- P--P-RRSPI-RRRSRS-PIRRPGRSRSSSISPRK------------GRGPAGRRGRS-- ------------------------------------------------------------ P--P-RRSPIGRRRTRS-PIRRSARSRSRSFSPRR------------GR-PPVRRGRS-- P--P-RRSPIGRRRTRS-PIRRSARSRSRSFSPRR------------GR-PPVRRGRS-- P--P-RRSPIGRRRSRS-PIRRPARSNSRSFSPRR------------GR-PPVRRGRS-- PPMP-RRSPVNRRRSRSPPVRRPVRSRSRSISPRR------------GRALAARHRRS-- P--P-RRSPL-RRRSRS-PICRPARSRSRSLSPRR------------GRAPGARRGRS--	16: 393-394 fgenesh1_pg.scaffold_157000058 7 2 U2 GTATTAAC..ACAG estExt_fgenesh1_pm.C_350034 8 2 U2 GTATTATA..GCAG LOC_Os01g72890.1 8 2 U2 GTAATAAA..GCAG LOC_Os01g72890.2 8 2 U2 GTAATAAA..GCAG GRMZM2G133926_T01 8 2 U2 GTAGTGGA..GCAG GRMZM2G060540_T01 8 2 U2 GTAGTGGG..GCAG GRMZM2G060540_T02 8 2 U2 GTAGTGGG..GCAG Glyma08g18310.1 8 2 U2 GTAATTTT..ACAG Glyma15g40710.1 8 2 U2 GTAATTTT..ACAG GSVIVP00025760001 9 2 U2 GTAACACC..ACAG estExt_fgenesh4_pg.C_LG_XI1221 8 2 U2 GTAAACAT..GCAG 17: 405-407 estExt_fgenesh1_pg.C_1180104 9 2 U2 GTGTTCTA..GCAG fgenesh1_pg.C_chr_3004174 7 2 U2 GTAATACT..ATAG
Pp~fgenesh1_pg.scaffold_157000058 Pp~estExt_fgenesh1_pm.C_350034 Pp~estExt_fgenesh1_pg.C_1180104 Os~LOC_Os01g72890.1 Os~LOC_Os01g72890.2 Sb~fgenesh1_pg.C_chr_3004174 Zm~GRMZM2G133926_T01 Zm~GRMZM2G060540_T01 Zm~GRMZM2G060540_T02 At~AT1G16610.1 Lj~LjSGA_083953.1 Gm~Glyma08g18310.1 Gm~Glyma15g40710.1 Lj~LjSGA_010297.2 Vv~GSVIVP00025760001 Pt~estExt_fgenesh4_pg.C_LG_XI1221	NPSGRAYSP--------PSPSKSSQALAKPIPVIN----------------------- TSYPSSPSPAKKRTSPPRGAKDFSKSRSPKKTIAN---SSPSGRSSSSPSPSKSSQ-- TSYSTSPSPVKRVS--PPGAKKFLKSRSPKKAFAN---SSPSGRSSSPSPSKSSQ--- SSYSRSPSPPR------KGPRRVSRSRTPPRHRRG-RSISSDSRSSSSPSPRRR---- SSYSRSPSPPR------KGPRRVSRSRTPPRHRRG-RSISSDSRSSSSPSPRRR---- EGLLEEEASLVTAEAAVHLPLDAAGRRNPWHCVSGRCPKVFIYFVGKSSSTLPL---- SSYSRSPTPPPR-----KGPRRVSRSRSPRRPPRG-RSISSDSRSSSSPSPRRGR--- SSYSRSPTPPPR-----KGPRRVSRSRSPRK--------------------------- SSYSRSPTPPPR-----KGPRRVSRSRSPRKPPRAGRSVSSDSRSSSSPSPRRGR--- SSYSSSPSP--R-----RIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPPPPRKT- ---------------------------------------------------------- SSYSDSPSP--R-----KVSRR-SKSRSPRRPLRGRGSSNSSSSSSPPPPPPPPPRKP SSYSDSPSP--R-----KVSRR-SKSRSPRRPLRGRGSSNSSSSSSPPPPPPPPTRKP SSFSDSPSP--R-----KVSRR-SRSRSPRRPLRGGRASSNSSSSSSPPPPPPPARK- SSYSGSPSP--R-----KAVRKMSRSGSPRRPLRG---KSSSNSSSSGTPPRKP---- SSYSGSPSP--R-----KATRKISRSRSPRRPLRG---RSSSNSSSSSSPPRKP----	18: 420-420 fgenesh1_pg.C_chr_3004174 8 1 U2 GTAACATA..GCAG 19: 430-431 estExt_fgenesh1_pm.C_350034 9 0 U2 GTGACTAA..GTAG estExt_fgenesh1_pg.C_1180104 10 0 U2 GTTAATAA..CCAG 20: 437-437 LOC_Os01g72890.1 9 0 U2 GTAAATGC..ATAG LOC_Os01g72890.2 9 0 U2 GTAAATGC..ATAG GRMZM2G133926_T01 9 0 U2 GTGAGTGC..ATAG GRMZM2G060540_T01 9 0 U2 GTGAGTGC..ATAG GRMZM2G060540_T02 9 0 U2 GTGAGTGC..ATAG Glyma08g18310.1 9 0 U2 GTATGTGT..ACAG Glyma15g40710.1 9 0 U2 GTATGCGT..ACAG GSVIVP00025760001 10 0 U2 GTTTGTTT..ACAG estExt_fgenesh4_pg.C_LG_XI1221 9 0 U2 GTTGGTGC..ACAG 21: 443-443 fgenesh1_pg.scaffold_157000058 8 2 U2 GTAAGATG..GCAG 22: 449-449 estExt_fgenesh1_pm.C_350034 10 2 U2 GTAAGAAT..TCAG estExt_fgenesh1_pg.C_1180104 11 2 U2 GTAAGCTG..ACAG LOC_Os01g72890.1 10 2 U2 GTAACATG..TCAG LOC_Os01g72890.2 10 2 U2 GTAACATG..TCAG GRMZM2G133926_T01 10 2 U2 GTAACATA..GCAG GRMZM2G060540_T02 10 2 U2 GTAACATA..GCAG Glyma08g18310.1 10 2 U2 GTAATGCA..GTAG Glyma15g40710.1 10 2 U2 GTAATGTA..GTAG GSVIVP00025760001 11 2 U2 GTAGTATT..GCAG estExt_fgenesh4_pg.C_LG_XI1221 10 2 U2 GTAATTCA..GTAG 23: 454-454 fgenesh1_pg.C_chr_3004174 9 2 U2 GTAAAGCC..TAAG
		3' UTR introns