SRGD Gene ID 227 BLASTp at NCBI n/a n/a  
OrganismsZm ,Sb ,At ,Os ,Vv ,Mt ,Pt ,Gm
Gene count19
Cintron count13
Cintron classesU2 ,im ,em ,GC ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
------------------------------------------------------------
MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR---------
MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR---------
MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR---------
MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR---------
MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR---------
MAYYARRGGDR---------VSGGGRVQGGG----GGGGGGGRGGYVLRGR---------
MTHFLTC-----------------------------------------------------
MTHFLTC-----------------------------------------------------
MTHFLTC-----------------------------------------------------
MSDALNMTLDEIVKKSKSERSAAARSG-GKGVSRKSGRGRGGPNGVVGGGR---------
MSGALNMTLDEIVKRGKTARSGGRGISRGRG----RGRGGGGRGAG--------------
MATSLDMSLDDIIKRSNSERVRGRGRA-RRG--------RGPIGGSFNGGRM--------
MATTVDMSLDDIIKK-NRERGRGRGRA-SRG----RDR-GPG--RFFNNGRM--------
MAATVDMSLDDIIKK-NRERGRGRGRA-SRG----RGR-GRGPVRSFNNGRM--------
------------------------------------------------------------
MASSLDMSLDDRI-K-NRSNNRGRGRG-GRG----RAHSGRGPSGTLNGRRMVGAVNSRR
MASSLDMSLDDRI-K-NRSNNRGRGRG-GRG----RAHSGRGPSGTLNGRRMVGAVNSRR
MASSLDMSLDDRI-K-NRS-NRGRGRG-GRG----RAHSGRGPSGALNGGRMAGAVSSRR
2: 0-0
AT1G66260.1 3 0 U2 ..
AT5G37720.1 3 0 U2 ..
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
------------------------------MFGIFQS-------FSRTKDMTW--RPDLF
----------SG-LPPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
----------SG-MPPRGPLGLGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF
-----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF
-----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF
-----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF
----------GGGPVRRGP--LAVNTRPSSSFSINKL-------ARRKRSLPWQNQNDLY
-------------PARRGP--LAVNARP-SSFTINKP-------VRRVRSLPW--QSGLF
----------SGIPPRRGP--LRVNARP-SSYAIAKA-----------SSKLW-----IF
----------SG-AVRRGP--LSVNARP-PKYSIAKASSKLWMPSRRIRSLPW--QHDLL
----------SG-AVRRGP--LSVNTWP-SKYSIAKASSKLWMPSRRVRSLPW--QHDLL
---------------------------------MQWS-------IRRPKTLAW--QSDLF
MAGAGNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF
MAGAGNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF
MAGASNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF
4: 94-95
Sb07g020860 1 0 GC GCAAGACC..TCAG
GRMZM2G171921_T06 1 0 GC GCAAGGCC..TCAG
GRMZM2G171921_T01 2 0 GC GCAAGGCC..TCAG
GRMZM2G171921_T02 1 0 GC GCAAGGCC..TCAG
GRMZM2G171921_T05 1 0 GC GCAAGGCC..TCAG
LOC_Os08g33120.1 1 0 GC GCAAGGCC..TCAG
CT963094_22.2 0 0 U2 GTTGAATT..CCAG
Glyma11g33670.1 0 0 GC GCAAGCTC..CCAG
Glyma11g33670.2 0 0 GC GCAAGCTC..CCAG
Glyma18g04530.1 0 2 U2 GGCAAGCT..GCCA
5: 102-102
gw1.IV.3602.1 0 0 U2 GTTTATGC..CCAG
fgenesh4_pg.C_LG_II002243 0 0 U2 GTATATGC..TCAG
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA
SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA
EETLRAVGVS-GVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSA
EDGLRAAGAS-GVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTA
HGSMICLKIAFELQAGTKLYISNLDYGVTNEDIRELFSEIGDIKRYAVHYEKNGRPSGSA
EDSIRAAGIT-GLEVGTKLYVSNLDYGVTNEDIRELFAEIGDLKRFAVHYDKNGRSTGSA
EDSIRAAGIT-GVEVGTKLYVSNLDYGVTNEDIRELFAEVGDLKRYAVHYDKDGRSSGSA
EDSLRAAGIQ-GVEADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSA
EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSA
EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSA
EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPRGSA
6: 152-153
GRMZM2G171921_T04 1 0 U2 GTATGTTC..GTAG
Sb07g020860 2 0 U2 GTATGTTC..GTAG
GRMZM2G171921_T06 2 0 U2 GTATGTTC..GTAG
GRMZM2G171921_T01 3 0 U2 GTATGTTC..GTAG
GRMZM2G171921_T02 2 0 U2 GTATGTTC..GTAG
GRMZM2G171921_T05 2 0 U2 GTATGTTC..GTAG
LOC_Os08g33120.1 2 0 U2 GTTTGTTA..GTAG
LOC_Os08g33120.3 0 0 U2 GTTTGTTA..GTAG
LOC_Os08g33120.2 0 0 U2 GTTTGTTA..GTAG
LOC_Os08g33120.5 0 0 U2 GTTTGTTA..GTAG
gw1.IV.3602.1 1 0 U2 GTACTAGT..GCAG
fgenesh4_pg.C_LG_II002243 1 0 U2 GTACAACT..TCAG
CT963094_22.2 1 0 U2 GTATAGAT..TCAG
Glyma11g33670.1 1 0 U2 GTATATAC..TCAG
Glyma11g33670.2 1 0 U2 GTATATAC..TCAG
Glyma18g04530.1 1 2 U2 GGTATATA..CTCA
7: 175-176
GRMZM2G171921_T04 2 0 U2 GTTCGTAC..AAAG
Sb07g020860 3 0 U2 GTGCGTAC..AAAG
GRMZM2G171921_T06 3 0 U2 GTTCGTAC..AAAG
GRMZM2G171921_T01 4 0 U2 GTTCGTAC..AAAG
GRMZM2G171921_T02 3 0 U2 GTTCGTAC..AAAG
GRMZM2G171921_T05 3 0 U2 GTTCGTAC..AAAG
LOC_Os08g33120.1 3 0 U2 GTTTGTAC..GCAG
LOC_Os08g33120.3 1 0 U2 GTTTGTAC..GCAG
LOC_Os08g33120.2 1 0 U2 GTTTGTAC..GCAG
LOC_Os08g33120.5 1 0 U2 GTTTGTAC..GCAG
gw1.IV.3602.1 2 0 U2 GTAAGTTC..ACAG
fgenesh4_pg.C_LG_II002243 2 0 U2 GTAAGCTC..ACAG
CT963094_22.2 2 0 U2 GTAAGTAT..ACAG
Glyma11g33670.1 2 0 U2 GTAAGTGT..ACAG
Glyma11g33670.2 2 0 U2 GTAAGTGT..ACAG
Glyma18g04530.1 2 2 U2 TGTAAGTA..AACA
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP
EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP
EVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTES-APVAARVN-----VTGLNGRM
EVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNV---NVTGLNGRL
EVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGN-----MPVSARVNV----IGGVNGKR
EVMYTRRSDAFSALKKYNNVLLDGRPMKIEIVGANPE--VPISARVN-----VTGANGKK
EVMYTRRSDAFAALKKYNNVLLDGKPMKIEIVGPNPV--VPISARMN-----VTGANGKK
EVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSA--LPVTARVNVSSMNVSAMNGQR
EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR
EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR
EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG
TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQARGRG
TRTVVMTP--EFSQRG---RGSSSRPL---SN-RFNNR----GGFQAGRGRGQFQSWGRG
TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG
TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG
TRTVVMT-----------------------------------------------------
TRTVVMTP--EIGQRG---SGSSSRPTGPTVN-RYN-R----GAFQAGRGRGRGRGRAPF
TRTVVMT------------------------N-RYN-R----GAFQAGRGRGRGRGRAPF
TRTVVMTP--EIGQRG---SGSSSRPTGPTVN-RYN-R----GAFQAGRGRGRGRGRAPF
TRTVVMTP--EIGQRG---SGSSSRPTGPT------------------------------
KRSVFIGQGVRGGRVG---RGRGSGPSGRRLPLQQNQQ----GGVTAGRGGFRGRGRGNG
KRTVVIQQ--GGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGN-
RRTVVMTP--GVGHAR---GSTAINRSSSRRG-----R----GGLSNGRGRGRAGSRGR-
KRTVVMIQ----SRRG---GGGP--------------R----NGMRNGRGRGRAQGQGR-
KRTVVTTQ----SRRG---GGDL--------------R----NGTRNGRGQAPGRGRAPG
KRTVVMTP--RGG-RG---GGPAMLNRGAGWG-R---R----GGSRGGSGSMRGRGRGR-
KRTVVMTS--RGGQAG---GGPAMPTRGAGWG-RR-------GGPRSGSGRGGAGGRGRG
KRTVVMTS--RGGQAG---GGPAMPTRGAGWGRR--------GGPRSGS-RGRGRGGA--
KRTVVMT-----------------------------------------------------
8: 245-246
GRMZM2G171921_T04 3 2 U2 GTAAGTGG..TCAG
Sb07g020860 4 2 U2 GTAAGTGT..TCAG
GRMZM2G171921_T06 4 2 U2 GTAAGTGG..TCAG
GRMZM2G171921_T01 5 2 U2 GTAAGTGG..TCAG
GRMZM2G171921_T02 4 2 U2 GTAAGTGG..TCAG
LOC_Os08g33120.1 4 2 U2 GTGAGTAA..TCAG
LOC_Os08g33120.3 2 2 U2 GTGAGTAA..CCAG
LOC_Os08g33120.2 2 2 U2 GTGAGTAA..TCAG
LOC_Os08g33120.5 2 2 U2 GTGAGTAA..TCAG
gw1.IV.3602.1 3 2 U2 GTATGTGG..GCAG
fgenesh4_pg.C_LG_II002243 3 2 U2 GTATGTGG..ACAG
CT963094_22.2 3 2 U2 GTAAGTTG..CCAG
Glyma11g33670.1 3 2 U2 GTAAGTTA..GCAG
Glyma11g33670.2 3 2 U2 GTAAGTTA..GCAG
Glyma18g04530.1 3 2 U2 AGTTATTT..TAGA
9: 266-269
GRMZM2G171921_T04 4 2 U2 GTAAGGCT..CAAG
Sb07g020860 5 2 U2 GTAAGGAT..CCAG
GRMZM2G171921_T06 5 2 U2 GTAAGGCT..CCAG
GRMZM2G171921_T01 6 2 U2 GTAAGGCT..CAAG
GRMZM2G171921_T02 5 2 U2 GTAAGGCT..CAAG
LOC_Os08g33120.1 5 2 U2 GTAAGGCT..CCAG
LOC_Os08g33120.2 3 2 U2 GTAAGGCT..CCAG
LOC_Os08g33120.5 3 0 U2 GTGTAAGG..CCAG
CT963094_22.2 4 2 U2 GTAAGTTT..ACAG
Glyma11g33670.1 4 2 U2 GTAAGCCT..GCAG
Glyma11g33670.2 4 2 U2 GTAAGCCT..GCAG
10: 287-287
Glyma11g33670.2 5 1 U2 GTGGACGT..CGAG
Zm~GRMZM2G171921_T04
Sb~Sb07g020860
Zm~GRMZM2G171921_T06
Zm~GRMZM2G171921_T01
Zm~GRMZM2G171921_T02
Zm~GRMZM2G171921_T05
Os~LOC_Os08g33120.1
Os~LOC_Os08g33120.3
Os~LOC_Os08g33120.2
Os~LOC_Os08g33120.5
At~AT1G66260.1
At~AT5G37720.1
Vv~GSVIVP00022454001
Pt~gw1.IV.3602.1
Pt~fgenesh4_pg.C_LG_II002243
Mt~CT963094_22.2
Gm~Glyma11g33670.1
Gm~Glyma11g33670.2
Gm~Glyma18g04530.1
RGQFQSRG----RGRAQFQGRGRGRK-PE-KTADELDKDLESYHAEAMKTD
RGQFQSRG----RGRGQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD
RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD
RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD
RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD
---------------------------------------------------
QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD
QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD
QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD
---------------------------------------------------
------------GGRGNKSG-GRGGKKPVEKSAADLDKDLESYHAEAMNIS
------------GGRGRGGGRGNGKK-PVEKSAADLDKDLESYHADAMNTS
-------------------GRGRGRKQPVEKSAVELDKELDNYHAEAMHT-
-------------------GRGRGKKQPAEKSVDDLDKELESYHAEAMQT-
------------RGQAPGRGRGRGKKQPVEKSVDELDKELESYHAEAMQT-
------------PGRG--GGRGRGRKDGVEKSAEQLDKELETYHAEAMQT-
------------RGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS
------------------GGRGRGRKDAVEKSAEELDKELETYHAEAMNIS
---------------------------------------------------


3' UTR introns