SRGD	Gene ID 227	BLASTp at NCBI	n/a	n/a		Organisms Zm ,Sb ,At ,Os ,Vv ,Mt ,Pt ,Gm Gene count 19 Cintron count 13 Cintron classes U2 ,im ,em ,GC ,absent
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	------------------------------------------------------------ MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR--------- MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR--------- MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR--------- MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR--------- MSYYERRGGDR-----------------GSG----RIQGSGGRGGHVLRGR--------- MAYYARRGGDR---------VSGGGRVQGGG----GGGGGGGRGGYVLRGR--------- MTHFLTC----------------------------------------------------- MTHFLTC----------------------------------------------------- MTHFLTC----------------------------------------------------- MSDALNMTLDEIVKKSKSERSAAARSG-GKGVSRKSGRGRGGPNGVVGGGR--------- MSGALNMTLDEIVKRGKTARSGGRGISRGRG----RGRGGGGRGAG-------------- MATSLDMSLDDIIKRSNSERVRGRGRA-RRG--------RGPIGGSFNGGRM-------- MATTVDMSLDDIIKK-NRERGRGRGRA-SRG----RDR-GPG--RFFNNGRM-------- MAATVDMSLDDIIKK-NRERGRGRGRA-SRG----RGR-GRGPVRSFNNGRM-------- ------------------------------------------------------------ MASSLDMSLDDRI-K-NRSNNRGRGRG-GRG----RAHSGRGPSGTLNGRRMVGAVNSRR MASSLDMSLDDRI-K-NRSNNRGRGRG-GRG----RAHSGRGPSGTLNGRRMVGAVNSRR MASSLDMSLDDRI-K-NRS-NRGRGRG-GRG----RAHSGRGPSGALNGGRMAGAVSSRR	2: 0-0 AT1G66260.1 3 0 U2 .. AT5G37720.1 3 0 U2 ..
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	------------------------------MFGIFQS-------FSRTKDMTW--RPDLF ----------SG-LPPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF ----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF ----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF ----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF ----------SG-LAPRGP--LGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF ----------SG-MPPRGPLGLGVNSRP-SARTIAKS-------FSRTKDMTW--RPDLF -----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF -----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF -----------------------------WMFGHFQS-------FSRTKDMTW--RPDLF ----------GGGPVRRGP--LAVNTRPSSSFSINKL-------ARRKRSLPWQNQNDLY -------------PARRGP--LAVNARP-SSFTINKP-------VRRVRSLPW--QSGLF ----------SGIPPRRGP--LRVNARP-SSYAIAKA-----------SSKLW-----IF ----------SG-AVRRGP--LSVNARP-PKYSIAKASSKLWMPSRRIRSLPW--QHDLL ----------SG-AVRRGP--LSVNTWP-SKYSIAKASSKLWMPSRRVRSLPW--QHDLL ---------------------------------MQWS-------IRRPKTLAW--QSDLF MAGAGNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF MAGAGNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF MAGASNGGRTTG-AVRRGP--LMVNTRP-SSYAIAKS-------IRRARPFPW--QHDLF	4: 94-95 Sb07g020860 1 0 GC GCAAGACC..TCAG GRMZM2G171921_T06 1 0 GC GCAAGGCC..TCAG GRMZM2G171921_T01 2 0 GC GCAAGGCC..TCAG GRMZM2G171921_T02 1 0 GC GCAAGGCC..TCAG GRMZM2G171921_T05 1 0 GC GCAAGGCC..TCAG LOC_Os08g33120.1 1 0 GC GCAAGGCC..TCAG CT963094_22.2 0 0 U2 GTTGAATT..CCAG Glyma11g33670.1 0 0 GC GCAAGCTC..CCAG Glyma11g33670.2 0 0 GC GCAAGCTC..CCAG Glyma18g04530.1 0 2 U2 GGCAAGCT..GCCA 5: 102-102 gw1.IV.3602.1 0 0 U2 GTTTATGC..CCAG fgenesh4_pg.C_LG_II002243 0 0 U2 GTATATGC..TCAG
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA SDSMAAS----GIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHFDGYGRPNGTA EETLRAVGVS-GVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSA EDGLRAAGAS-GVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTA HGSMICLKIAFELQAGTKLYISNLDYGVTNEDIRELFSEIGDIKRYAVHYEKNGRPSGSA EDSIRAAGIT-GLEVGTKLYVSNLDYGVTNEDIRELFAEIGDLKRFAVHYDKNGRSTGSA EDSIRAAGIT-GVEVGTKLYVSNLDYGVTNEDIRELFAEVGDLKRYAVHYDKDGRSSGSA EDSLRAAGIQ-GVEADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSA EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSA EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSA EDSLRAAGIQ-GVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPRGSA	6: 152-153 GRMZM2G171921_T04 1 0 U2 GTATGTTC..GTAG Sb07g020860 2 0 U2 GTATGTTC..GTAG GRMZM2G171921_T06 2 0 U2 GTATGTTC..GTAG GRMZM2G171921_T01 3 0 U2 GTATGTTC..GTAG GRMZM2G171921_T02 2 0 U2 GTATGTTC..GTAG GRMZM2G171921_T05 2 0 U2 GTATGTTC..GTAG LOC_Os08g33120.1 2 0 U2 GTTTGTTA..GTAG LOC_Os08g33120.3 0 0 U2 GTTTGTTA..GTAG LOC_Os08g33120.2 0 0 U2 GTTTGTTA..GTAG LOC_Os08g33120.5 0 0 U2 GTTTGTTA..GTAG gw1.IV.3602.1 1 0 U2 GTACTAGT..GCAG fgenesh4_pg.C_LG_II002243 1 0 U2 GTACAACT..TCAG CT963094_22.2 1 0 U2 GTATAGAT..TCAG Glyma11g33670.1 1 0 U2 GTATATAC..TCAG Glyma11g33670.2 1 0 U2 GTATATAC..TCAG Glyma18g04530.1 1 2 U2 GGTATATA..CTCA 7: 175-176 GRMZM2G171921_T04 2 0 U2 GTTCGTAC..AAAG Sb07g020860 3 0 U2 GTGCGTAC..AAAG GRMZM2G171921_T06 3 0 U2 GTTCGTAC..AAAG GRMZM2G171921_T01 4 0 U2 GTTCGTAC..AAAG GRMZM2G171921_T02 3 0 U2 GTTCGTAC..AAAG GRMZM2G171921_T05 3 0 U2 GTTCGTAC..AAAG LOC_Os08g33120.1 3 0 U2 GTTTGTAC..GCAG LOC_Os08g33120.3 1 0 U2 GTTTGTAC..GCAG LOC_Os08g33120.2 1 0 U2 GTTTGTAC..GCAG LOC_Os08g33120.5 1 0 U2 GTTTGTAC..GCAG gw1.IV.3602.1 2 0 U2 GTAAGTTC..ACAG fgenesh4_pg.C_LG_II002243 2 0 U2 GTAAGCTC..ACAG CT963094_22.2 2 0 U2 GTAAGTAT..ACAG Glyma11g33670.1 2 0 U2 GTAAGTGT..ACAG Glyma11g33670.2 2 0 U2 GTAAGTGT..ACAG Glyma18g04530.1 2 2 U2 TGTAAGTA..AACA
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGNDLG--LPMTPRINV----VGASNGRA EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP EVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLG--LPMTPRINV----VGASNGRP EVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTES-APVAARVN-----VTGLNGRM EVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNV---NVTGLNGRL EVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGN-----MPVSARVNV----IGGVNGKR EVMYTRRSDAFSALKKYNNVLLDGRPMKIEIVGANPE--VPISARVN-----VTGANGKK EVMYTRRSDAFAALKKYNNVLLDGKPMKIEIVGPNPV--VPISARMN-----VTGANGKK EVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSA--LPVTARVNVSSMNVSAMNGQR EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR EVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSE--LPISARVN-----VTGVNGRR
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQARGRG TRTVVMTP--EFSQRG---RGSSSRPL---SN-RFNNR----GGFQAGRGRGQFQSWGRG TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG TRTVVMTP--EFSQRG---RGSSSRPLSNPSN-RFNNR----GGFQAGRGRGQFQSWGRG TRTVVMT----------------------------------------------------- TRTVVMTP--EIGQRG---SGSSSRPTGPTVN-RYN-R----GAFQAGRGRGRGRGRAPF TRTVVMT------------------------N-RYN-R----GAFQAGRGRGRGRGRAPF TRTVVMTP--EIGQRG---SGSSSRPTGPTVN-RYN-R----GAFQAGRGRGRGRGRAPF TRTVVMTP--EIGQRG---SGSSSRPTGPT------------------------------ KRSVFIGQGVRGGRVG---RGRGSGPSGRRLPLQQNQQ----GGVTAGRGGFRGRGRGNG KRTVVIQQ--GGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGN- RRTVVMTP--GVGHAR---GSTAINRSSSRRG-----R----GGLSNGRGRGRAGSRGR- KRTVVMIQ----SRRG---GGGP--------------R----NGMRNGRGRGRAQGQGR- KRTVVTTQ----SRRG---GGDL--------------R----NGTRNGRGQAPGRGRAPG KRTVVMTP--RGG-RG---GGPAMLNRGAGWG-R---R----GGSRGGSGSMRGRGRGR- KRTVVMTS--RGGQAG---GGPAMPTRGAGWG-RR-------GGPRSGSGRGGAGGRGRG KRTVVMTS--RGGQAG---GGPAMPTRGAGWGRR--------GGPRSGS-RGRGRGGA-- KRTVVMT-----------------------------------------------------	8: 245-246 GRMZM2G171921_T04 3 2 U2 GTAAGTGG..TCAG Sb07g020860 4 2 U2 GTAAGTGT..TCAG GRMZM2G171921_T06 4 2 U2 GTAAGTGG..TCAG GRMZM2G171921_T01 5 2 U2 GTAAGTGG..TCAG GRMZM2G171921_T02 4 2 U2 GTAAGTGG..TCAG LOC_Os08g33120.1 4 2 U2 GTGAGTAA..TCAG LOC_Os08g33120.3 2 2 U2 GTGAGTAA..CCAG LOC_Os08g33120.2 2 2 U2 GTGAGTAA..TCAG LOC_Os08g33120.5 2 2 U2 GTGAGTAA..TCAG gw1.IV.3602.1 3 2 U2 GTATGTGG..GCAG fgenesh4_pg.C_LG_II002243 3 2 U2 GTATGTGG..ACAG CT963094_22.2 3 2 U2 GTAAGTTG..CCAG Glyma11g33670.1 3 2 U2 GTAAGTTA..GCAG Glyma11g33670.2 3 2 U2 GTAAGTTA..GCAG Glyma18g04530.1 3 2 U2 AGTTATTT..TAGA 9: 266-269 GRMZM2G171921_T04 4 2 U2 GTAAGGCT..CAAG Sb07g020860 5 2 U2 GTAAGGAT..CCAG GRMZM2G171921_T06 5 2 U2 GTAAGGCT..CCAG GRMZM2G171921_T01 6 2 U2 GTAAGGCT..CAAG GRMZM2G171921_T02 5 2 U2 GTAAGGCT..CAAG LOC_Os08g33120.1 5 2 U2 GTAAGGCT..CCAG LOC_Os08g33120.2 3 2 U2 GTAAGGCT..CCAG LOC_Os08g33120.5 3 0 U2 GTGTAAGG..CCAG CT963094_22.2 4 2 U2 GTAAGTTT..ACAG Glyma11g33670.1 4 2 U2 GTAAGCCT..GCAG Glyma11g33670.2 4 2 U2 GTAAGCCT..GCAG 10: 287-287 Glyma11g33670.2 5 1 U2 GTGGACGT..CGAG
Zm~GRMZM2G171921_T04 Sb~Sb07g020860 Zm~GRMZM2G171921_T06 Zm~GRMZM2G171921_T01 Zm~GRMZM2G171921_T02 Zm~GRMZM2G171921_T05 Os~LOC_Os08g33120.1 Os~LOC_Os08g33120.3 Os~LOC_Os08g33120.2 Os~LOC_Os08g33120.5 At~AT1G66260.1 At~AT5G37720.1 Vv~GSVIVP00022454001 Pt~gw1.IV.3602.1 Pt~fgenesh4_pg.C_LG_II002243 Mt~CT963094_22.2 Gm~Glyma11g33670.1 Gm~Glyma11g33670.2 Gm~Glyma18g04530.1	RGQFQSRG----RGRAQFQGRGRGRK-PE-KTADELDKDLESYHAEAMKTD RGQFQSRG----RGRGQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD RGQFQSRG----RGRAQFQGRGRGRK--PEKTADELDKDLESYHAEAMKTD --------------------------------------------------- QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD QSQFQGRGTGSVRGRGQFQGRGRGRR-QAGKTADELDKDLETYHAEAMKTD --------------------------------------------------- ------------GGRGNKSG-GRGGKKPVEKSAADLDKDLESYHAEAMNIS ------------GGRGRGGGRGNGKK-PVEKSAADLDKDLESYHADAMNTS -------------------GRGRGRKQPVEKSAVELDKELDNYHAEAMHT- -------------------GRGRGKKQPAEKSVDDLDKELESYHAEAMQT- ------------RGQAPGRGRGRGKKQPVEKSVDELDKELESYHAEAMQT- ------------PGRG--GGRGRGRKDGVEKSAEQLDKELETYHAEAMQT- ------------RGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS ------------------GGRGRGRKDAVEKSAEELDKELETYHAEAMNIS ---------------------------------------------------
		3' UTR introns