SRGD	Gene ID 226	BLASTp at NCBI	n/a	n/a		Organisms At ,Os ,Sb ,Vv ,Pt ,Gm ,Zm Gene count 19 Cintron count 11 Cintron classes U2 ,im ,em ,absent
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Zm~GRMZM2G064612_T01 Zm~GRMZM2G064612_T02 Zm~GRMZM2G064612_T03 Sb~e_gw1.1.19228.1 Os~LOC_Os04g02870.3 Os~LOC_Os04g02870.4 Os~LOC_Os04g02870.1 Os~LOC_Os04g02870.2 Zm~GRMZM2G021223_T02 Sb~estExt_fgenesh1_kg.C_chr_60010 Zm~GRMZM2G021223_T01 Gm~Glyma07g05900.2 Gm~Glyma16g02500.1 Gm~Glyma07g05900.1 Vv~GSVIVP00008658001 Pt~gw1.XIV.1813.1 Pt~eugene3.00021623 At~AT2G46610.1 At~AT3G61860.1	--MRPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNV --MRPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNV --MRPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNV --MRPVFCGNFDHDTRQYDLERLFSKYGSISRIDMKTGYAFIYFEDERDAEDAIRRLDNV MLSSDPSMESTNNHTSALHTIRYF------------AGFAFVYFEDERDGDEAIRALDGY MLSSDPSMESTNNHTSALHTIRYF------------AGFAFVYFEDERDGDEAIRALDGY --MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGY --MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGY --MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGY --MRPVFVGNLDYDTRHSELDQLFYRYGRVERIDMKSGFAFVYFEDERDGNDAIRALDGY --MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGY MCISP----------------HLY------------SGFAFVYYEDERDAEEAIRALDNV --MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNV --MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNV --MRPIFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDEHDADDAIRGLDNI ---RPIFVGNFEQETRQSELERLFRKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDNI -MARPVFVGNFEHETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNI --MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNT --MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNF	2: 2-2 AT2G46610.1 0 0 U2 .. AT3G61860.1 0 0 U2 .. 3: 36-36 e_gw1.1.19228.1 0 1 U2 GTACTCGA..GTAG LOC_Os04g02870.3 2 1 U2 GTGCAGTA..TTAG LOC_Os04g02870.4 2 1 U2 GTGCAGTA..TTAG LOC_Os04g02870.1 1 1 U2 GTCTGCCT..TTAG LOC_Os04g02870.2 0 1 U2 GTCTGCCT..TTAG estExt_fgenesh1_kg.C_chr_60010 1 1 U2 GTCTGCTC..GCAG Glyma07g05900.2 0 1 U2 GTGTTGTA..ACAG Glyma16g02500.1 0 1 U2 GTAAAACC..ACAG Glyma07g05900.1 0 1 U2 GTAAAACC..ACAG gw1.XIV.1813.1 0 1 U2 GTAAACTG..GCAG eugene3.00021623 0 1 U2 GTAAACTG..GCAG
Zm~GRMZM2G064612_T01 Zm~GRMZM2G064612_T02 Zm~GRMZM2G064612_T03 Sb~e_gw1.1.19228.1 Os~LOC_Os04g02870.3 Os~LOC_Os04g02870.4 Os~LOC_Os04g02870.1 Os~LOC_Os04g02870.2 Zm~GRMZM2G021223_T02 Sb~estExt_fgenesh1_kg.C_chr_60010 Zm~GRMZM2G021223_T01 Gm~Glyma07g05900.2 Gm~Glyma16g02500.1 Gm~Glyma07g05900.1 Vv~GSVIVP00008658001 Pt~gw1.XIV.1813.1 Pt~eugene3.00021623 At~AT2G46610.1 At~AT3G61860.1	SFGYNRRRLSVEWSR---QVEPVPKSR-DRPTGDVKPTRTLFVINFDPIRTKVQDIEKHF SFGYNRRRLSVEWSR---QVEPVPKSR-DRPTGDVKPTRTLFVINFDPIRTKVQDIEKHF SFGYNRRRLSVEWSR---QVEPVPKSR-DRPTGDVKPTRTLFVINFDPIRTKVQDIEKHF SFGYDRRKLSVEWSR---QVEPVPKSR-DRPTGDVKPTRTLFVINFDPMRTKVQDIERHF PFGPGRRRLSVEWSR---GDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHF PFGPGRRRLSVEWSR---GDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHF PFGPGRRRLSVEWSR---GDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHF PFGPGRRRLSVEWSR---GDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHF PFGPGRRRLSVEWSR---GEQAGRRDG-NKPEANTKPTRTLFVINFDPMNTRVSDIERHF PFGPGRRRLSVEWSR---GDRAARRDG-NKPEANTKPTRTLFVINFDPINTRVSDIERHF PFGPGRRRLSVEWSR---GEQAGRRDG-NKPEANTKPTRTLFVINFDPMNTRVSDIERHF PFGHEKRRLSVEWAR---GERGRHHDG-SK--ANQKPTKTLFVINFDPIRTRVRDIEKHF PFGHEKRRLSVEWAR---GERGRHRDG-SK--ANQKPTKTLFVINFDPIRTRVRDIEKHF PFGHEKRRLSVEWAR---GERGRHHDG-SK--ANQKPTKTLFVINFDPIRTRVRDIEKHF PFGYDRRRLSVEWAK---GERGRHREG-SRSMANQRPTKTLFVINFDPIRTRIRDIERHF PFGYDRRRLSVEWARVYAGERGRHRDG-PRSTVNQRPTKTLFVINFDPIHTRVEDIKRHF PFGYDRRRLSVEWAR---GERGRHRDG-PRSTANQRPTKTLFVINFDPIHTRVEDIKRHF TFGYGRRKLSVEWAKDFQGERGKPRDG--KAVSNQRPTKTLFVINFDPIRTRERDMERHF PFGYEKRRLSVEWAK---GERGRPRGD-AKAPSNLKPTKTLFVINFDPIRTKEHDIEKHF	4: 74-74 e_gw1.1.19228.1 1 0 U2 GTAATTTC..TCAG LOC_Os04g02870.3 3 0 U2 GTAATTTC..ACAG LOC_Os04g02870.4 3 0 U2 GTAATTTC..ACAG LOC_Os04g02870.1 2 0 U2 GTAATTTC..ACAG LOC_Os04g02870.2 1 0 U2 GTAATTTC..ACAG estExt_fgenesh1_kg.C_chr_60010 2 0 U2 GTAATTCC..GTAG Glyma07g05900.2 1 0 U2 GTATGATA..GCAG Glyma16g02500.1 1 0 U2 GTATGATA..GCAG Glyma07g05900.1 1 0 U2 GTATGATA..GCAG eugene3.00021623 1 0 U2 GTATATGG..CTAG 5: 77-77 gw1.XIV.1813.1 1 0 U2 GTTCTCAC..CTAG
Zm~GRMZM2G064612_T01 Zm~GRMZM2G064612_T02 Zm~GRMZM2G064612_T03 Sb~e_gw1.1.19228.1 Os~LOC_Os04g02870.3 Os~LOC_Os04g02870.4 Os~LOC_Os04g02870.1 Os~LOC_Os04g02870.2 Zm~GRMZM2G021223_T02 Sb~estExt_fgenesh1_kg.C_chr_60010 Zm~GRMZM2G021223_T01 Gm~Glyma07g05900.2 Gm~Glyma16g02500.1 Gm~Glyma07g05900.1 Vv~GSVIVP00008658001 Pt~gw1.XIV.1813.1 Pt~eugene3.00021623 At~AT2G46610.1 At~AT3G61860.1	EPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRY EPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRY EPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRY EPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDSERDDRY EPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFR-DDTERGDRY EPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFR-DDTERGDRY EPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFR-DDTERGDRY EPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFR-DDTERGDRY TPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFR-DDSEVSDRY APFGNLSSVRIRKNFAFVQFETLEEARKALDATHATTLLDRVISVEYAFR-DDSERSDRY TPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFR-DDSEVSDRY EPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALR-DDGERGDNY EPYGNVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALR-DDGERGDNY EPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALR-DDGERGDNY EPYGKVLHVRIRRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALR-DDS---DKY ERYGEVLHVRIRRNFAFVQFETQEDATKALQRTHMTKILDRVVSVEYALR-DDSERGDRY ERYGEVLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALR-DDSERGDRY EPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALR-EAGEREDRY EPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALK-DDDERDDRN	6: 154-154 e_gw1.1.19228.1 2 2 U2 GTATTATT..ACAG LOC_Os04g02870.3 4 2 U2 GTATGAAT..GCAG LOC_Os04g02870.4 4 2 U2 GTATGAAT..GCAG LOC_Os04g02870.1 3 2 U2 GTATGAAT..GCAG LOC_Os04g02870.2 2 2 U2 GTATGAAT..GCAG estExt_fgenesh1_kg.C_chr_60010 3 2 U2 GTAAGCCT..GCAG Glyma07g05900.2 2 2 U2 GTAAGCGG..GCAG Glyma16g02500.1 2 2 U2 GTAAGTGA..GCAG Glyma07g05900.1 2 2 U2 GTAAGCGG..GCAG gw1.XIV.1813.1 2 2 U2 GTTAGTCA..GCAG eugene3.00021623 2 2 U2 GTTAGTCA..GCAG
Zm~GRMZM2G064612_T01 Zm~GRMZM2G064612_T02 Zm~GRMZM2G064612_T03 Sb~e_gw1.1.19228.1 Os~LOC_Os04g02870.3 Os~LOC_Os04g02870.4 Os~LOC_Os04g02870.1 Os~LOC_Os04g02870.2 Zm~GRMZM2G021223_T02 Sb~estExt_fgenesh1_kg.C_chr_60010 Zm~GRMZM2G021223_T01 Gm~Glyma07g05900.2 Gm~Glyma16g02500.1 Gm~Glyma07g05900.1 Vv~GSVIVP00008658001 Pt~gw1.XIV.1813.1 Pt~eugene3.00021623 At~AT2G46610.1 At~AT3G61860.1	DI--PKQ---GAYDRR--GGSPYMRSPSPRYRRDYVPDYGRRGRYPGYGRRDGAMYE-RR DI--PKQ---GAYDRR--GGSPYMRSPSPRYRRDYVPDYGRRGRYPGYGRRDGAMYE-RR DI--PKQ---GAYDRR--GGSPYMRSPSPRYRRDYVPDYGRRGRYPGYGRRDGAMYE-RR GS--PKR---GAYDRR--RGNPYLRSPSPRYRR---------ERSPVYDR-----YNRGR DG--AR----GGYGRR--DDSPYRRSVSPVYRSRPSPDYGR-QRSPVYGS-----YD--R DG--AR----GGYGRR--DDSPYRRSVSPVYRSRPSPDYGR-QRSPVYGS-----YD--R DG--AR----GGYGRR--DDSPYRRSVSPVYRSRPSPDYGR-QRSPVYGS-----YD--R DG--AR----GGYGRR--DDSPYRRSVSPVYRSRPSPDYGR-QRSPVYGS-----YD--R GS--PRRG--GGYDLLLIDQGPHLRNEEHMTNREPS-------VMP-YMA---------- DS--PRRG--GGYGRR--GD-------SPVYRSRPSPDYGR-PASPVYGS-----YD--R GS--PRRG--GGYGRR--GD-------SPVYRSRPSPDYGR-PASPVYGS-----YD-GP DS--PRRR--GGYERS----------PSP-YHRRPSPDYGR-PRSPVYDR-----YN-GG DS--PRR---GGYERS----------PSP-YHRRPSPDYGR-PRSPVYDR-----YN-GG DS--PRRR--GGYERS----------PSP-YHRRPSPDYGR-PRSPVYDR-----YN-GG DS--PRR---GVLMGD-------RLVQ--------------------------------- DS--PRR---GSYYGR---------SPSPAHHRRPNPDYGR-GHSPVYDK-----YN--- DS--PRR---GSYNGR---------SPSPVYRRRPSPDYVR-ARSPVYDK-----YN--- AG--SRR----------------RRSPSPVYRRRPSPDYTR-RRSPEYDR-----YK-GP GGRSPRRSLSPVYRRR--PSPDYGRRPSPGQGRRPSPDYGR-ARSPEYDR-----YK-GP	7: 212-212 e_gw1.1.19228.1 3 2 U2 GTACAGTC..AAAG
Zm~GRMZM2G064612_T01 Zm~GRMZM2G064612_T02 Zm~GRMZM2G064612_T03 Sb~e_gw1.1.19228.1 Os~LOC_Os04g02870.3 Os~LOC_Os04g02870.4 Os~LOC_Os04g02870.1 Os~LOC_Os04g02870.2 Zm~GRMZM2G021223_T02 Sb~estExt_fgenesh1_kg.C_chr_60010 Zm~GRMZM2G021223_T01 Gm~Glyma07g05900.2 Gm~Glyma16g02500.1 Gm~Glyma07g05900.1 Vv~GSVIVP00008658001 Pt~gw1.XIV.1813.1 Pt~eugene3.00021623 At~AT2G46610.1 At~AT3G61860.1	SPVYDR---YGGGRSPAYDR-----YDRRR--------SPGYDQY------------- SPVYDR---YGGGRSPAYDR-----YDRRR--------SPGYDQY------------- SPVYDR---YGGGRSPAYDR-----YDRRR--------SPGYDQY------------- SPVYDR---YNRGRSPVYDG-----YDRRG--------SPGYDQY------------- SPVNDR---Y-RSRSPVR-RSRSPLANRRA-----------YD--------------- SPVNDR---Y-RSRSPVR-RSRSPLANRRA-----------YD--------------- SPVNDR---Y-RSRSPVR-RSRSPLANRRA-----------YD--------------- SPVNDR---Y-RSRSPVR-RSRSPLANRRA-----------YD--------------- ---------------------------------------------------------- SPVRDR---Y-R-RSPAY-RSRSPRVNRRA-----------YD--------------- GPVRDR---Y-R-RSPAY-RSRSPPAKRRA-----------YD--------------- GPDMRRSPDYGRHRSPDYGRRRSPDYGKPR--------SPEYGRYRSCSRSPVRRSRT GPDRRRSPDYGRHRSPDYGRRRSPDYGRRKSPDYGKPRSPEYGRYR--SRSPVRRSRT GPDMRRSPDYGRHRSPDYGRRRSPDYGKPR--------SPEYGRYRSCSRSPVRRSRT ---------------------------------------------------------- GPVHDR------RRSPDYGRNRSPEYGRHR---------------------------- GPVYDR------RQSPDYGRNRSPEYGRNR-----R---------------------- AP-------YERRKSPDYGR-RSSDYGRAR------ARSPGYDRSR--SPIQRARG-- AAYERR-------RSPDYGR-RSSDYGRQR--------SPGYDRYR--SRSPVPRGRP	8: 251-251 LOC_Os04g02870.3 5 2 U2 GTATGTCC..GCAG LOC_Os04g02870.4 5 2 U2 GTATGTCC..GCAG LOC_Os04g02870.1 4 2 U2 GTATGTCC..GCAG LOC_Os04g02870.2 3 2 U2 GTATGTCC..GCAG estExt_fgenesh1_kg.C_chr_60010 4 2 U2 GTATGCCC..GCAG 9: 285-285 Glyma07g05900.2 3 2 U2 GTATTGTA..GCAG Glyma16g02500.1 3 2 U2 GTATTGTA..GCAG Glyma07g05900.1 3 2 U2 GTATTGTA..GCAG