SRGD	Gene ID 225	BLASTp at NCBI	n/a	n/a		Organisms Gm ,Mt ,Vv ,Os ,Zm ,Pp ,Lj ,Sb ,Pt ,At Gene count 19 Cintron count 12 Cintron classes U2 ,em ,im ,absent
Home (Search)						Bookmark for this page        Download data

		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Lj~chr1.LjT04O21.100.nd Pp~estExt_Genewise1.C_1090004 Pp~e_gw1.3.614.1 Pp~e_gw1.278.27.1 At~AT3G07860.1 Pt~fgenesh4_pm.C_LG_II000072 Vv~GSVIVP00015525001 Gm~Glyma12g03170.1 Gm~Glyma11g10920.1 Gm~Glyma11g10970.2 Gm~Glyma11g10970.3 Gm~Glyma11g10970.1 Lj~LjSGA_146705.1 Mt~AC122726_14.2 Mt~AC146776_33.2 Mt~AC125476_1.2 Os~LOC_Os04g56770.1 Zm~GRMZM2G047321_T01 Sb~fgenesh1_pg.C_chr_6002546	------------------------------------------------------------ -------------------------------------------------MMLGVRRGDMG ------------------------------------------------------MRGDLG --------------------------------------------------MSGVRRGDLG -----------------------------------------------------MESGDYD --------------------------------------------MESSSKGEDEVGGYNS -----------------------------------------MESSGGGKREEEDVGSYNS ------------------------------------------------------MEEYNK ------------------------------------------------------MEEYNK ------------------------------------------------------MEEYNK ------------------------------------------------------MEEYNK MLDDYHCPFCSCHEEEASHIFFGCQRIMPLWWESLAWTEADQKVGCFGKLGSINMEEYNK ------------------------------------------------------------ ----------------------------------------------------MGEGAEYK ----------------------------------------------------MGEGAEYK ----------------------------------------------------MGEGAEYK ------------------------------MDPGKSFSAAEEEATDSVSTKPEEVAAYQS --------------------------------------------MDPSSGKPEEVAAYQS --------------------------------------------MDSGSGKPEVVAAYQS	2: 0-0 Glyma11g10970.1 0 0 U2 GTAGAAAT..GCAG AC125476_1.2 1 0 U2 .. 3: 38-38 Glyma11g10970.1 1 0 U2 GTTGTAAC..GCAG 4: 52-52 AC125476_1.2 0 0 U2 ..
Lj~chr1.LjT04O21.100.nd Pp~estExt_Genewise1.C_1090004 Pp~e_gw1.3.614.1 Pp~e_gw1.278.27.1 At~AT3G07860.1 Pt~fgenesh4_pm.C_LG_II000072 Vv~GSVIVP00015525001 Gm~Glyma12g03170.1 Gm~Glyma11g10920.1 Gm~Glyma11g10970.2 Gm~Glyma11g10970.3 Gm~Glyma11g10970.1 Lj~LjSGA_146705.1 Mt~AC122726_14.2 Mt~AC146776_33.2 Mt~AC125476_1.2 Os~LOC_Os04g56770.1 Zm~GRMZM2G047321_T01 Sb~fgenesh1_pg.C_chr_6002546	-------------------MINQIPSSPMMIVNDSFLYHRLPSQTLKLSILKLDASSF-- TYFKRSQFKPLVSSFREDP----VGTAGTVAKVDSLIGVELGT-SMKLSILKLDGSHF-- TYFRRSQFEPLVSTLLDDPILADVPKNATVADIDTLIGVELGS-AMKLSILKLDGSHL-- TYFRRSQFEPLVSTLPYEHSLDHVPKNETVVGTDTLIGVKLGS-AIRLSILKLDGIHF-- VETKREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGS-AMRLSVVKLDGSSL-- SNVKKAKLQSTLAALLDDPILSDVPKKPTLSDVDTLISLEMGS-AMRISVQKLDGTSF-- NNVKKARLHSTLTALLDDPILADVPKEPTLSDVDTLINLELGS-AMRISVIKLDSTSF-- SRVKKARLNSLLTTLLDDPILSDFPKNPTFADVDTLINLEMGS-AMRISVLKLDGTTF-- SSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGS-AMRISVLKLDGTTL-- SSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGS-AMRISVLKLDGTTL-- SSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGS-AMRISVLKLDGTTL-- SSVKKARLNSLLTTLLDDPILSDVPKNPTFADVDTLINLELGS-AMRISVLKLDGTTL-- ------------------------------------------------------------ SGLKKAK---VLKALLEDPILADVPKNPTLEDVETLIGLELGS-AMRITVLKLDTTSF-- SGLKKAK---VLKALLEDPILADVPKNPTLEDVETLIGLELGS-AMRITVLKLDTTSF-- SGLKKAK---VLKALLEDPILADVPKNPTLEDVETLIGLELGS-AMRITVLKLDTTSF-- SEAKQAKLQSMLAALLDDPILADVPRKPSLADVDTLINLELGS-AMRLTVVKLDGTSFGT KEAKQARLQSMLAALLDDPILADVTRKPSLADVDTLINLELGS-AMRLTVVKLDNTSF-- KEAKQARLQSMLAALLDDPILADVPRKPSLADVDTLINLELGS-AMRLSVVKLDNTSF--	5: 117-119 chr1.LjT04O21.100.nd 0 1 U2 GTAATTCT..GAAG estExt_Genewise1.C_1090004 0 1 U2 GTATGTGG..CCAG e_gw1.3.614.1 0 1 U2 GTATCCCC..CCAG e_gw1.278.27.1 0 1 U2 GTACATAC..TCAG AT3G07860.1 0 1 U2 GTACATAT..GCAG fgenesh4_pm.C_LG_II000072 0 1 U2 GTATTCAA..GAAG GSVIVP00015525001 0 1 U2 GTACCAAA..GAAG Glyma12g03170.1 0 1 U2 GTAATACT..CAAG Glyma11g10920.1 0 1 U2 GTAATACT..TAAG Glyma11g10970.2 1 1 U2 GTAATACT..TAAG Glyma11g10970.3 2 1 U2 GTAATACT..TAAG Glyma11g10970.1 2 1 U2 GTAATACT..TAAG LOC_Os04g56770.1 0 1 U2 GTCCCTTC..AAAG GRMZM2G047321_T01 0 1 U2 GTACGCAT..AAAG fgenesh1_pg.C_chr_6002546 0 1 U2 GTACTCAT..AAAG
Lj~chr1.LjT04O21.100.nd Pp~estExt_Genewise1.C_1090004 Pp~e_gw1.3.614.1 Pp~e_gw1.278.27.1 At~AT3G07860.1 Pt~fgenesh4_pm.C_LG_II000072 Vv~GSVIVP00015525001 Gm~Glyma12g03170.1 Gm~Glyma11g10920.1 Gm~Glyma11g10970.2 Gm~Glyma11g10970.3 Gm~Glyma11g10970.1 Lj~LjSGA_146705.1 Mt~AC122726_14.2 Mt~AC146776_33.2 Mt~AC125476_1.2 Os~LOC_Os04g56770.1 Zm~GRMZM2G047321_T01 Sb~fgenesh1_pg.C_chr_6002546	YVEVAKTANVAELKKAVEATFGYMPQK--GPGKISW---------PHVWGQFCLSYEGHK DVVVLTNSRVRDLKQAVVKYVDHLEQSELGHKRISW---------QHVWGHFCLCHGTEK EVAVLNNAKVRDLKQAVMKYVDFQEQSHLGQRHISW---------SHVWDHFCLSYGKEK EVTVPNNGKVRDLKQSIMMYVDSDEQSQLGHRHISW---------KHVWNNFCLSFGKEK DVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISW---------KHVWSNFCLSCNNEK DVALMNSATVKDLKLAIKRKLIEMEQSKMGHRHISW---------KKVWANFALSYHNQK DVAVLNSATVKDLKLAIKKKINDMEQSKMGHRHISW---------KHVWANFCLSYYNDK -----------GLKLAIKKKVNDMEQSSMGHRHISW---------KHICENYCLSCHNNK DVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISW---------KHVWANYCLSCHNNK DVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISW---------KHVWANYCLSCHNNK DVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISW---------KHVWANYCLSCHNNK DVIVMNSATVKDLKLAIKKKVNDMEQSSMGHRHISW---------KHVWANYCLSCHNNK -------------KLAIKKKVNDMEQSNMGHRQISW---------RGVWAKCCLSYNNHK DVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISW---------RSVWANYCLSFDNNK DVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISW---------RSVWANYCLSFDNNK DVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISW---------RSVWANYCLSFDNNK DVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRHISWFLFFFMAFFQELSDPFTASSDHWK DVAVLNSATVKDLKLAIRKKINEIEQEKMGHRHISW---------KHVWDNYCLTHHNEK EVAVLNSATVKDLKLAIRKKINEIEQEQMGHRHISW---------KHVWDNYCLTHHNEK	6: 154-154 chr1.LjT04O21.100.nd 1 2 U2 GTGCGTGT..ATAG estExt_Genewise1.C_1090004 1 2 U2 GTGGGTAC..GCAG e_gw1.278.27.1 1 2 U2 GTTAATAC..GCAG AT3G07860.1 1 2 U2 GTAAATAG..GCAG fgenesh4_pm.C_LG_II000072 1 2 U2 GTAAGCTA..GCAG GSVIVP00015525001 1 2 U2 GTATGATA..GCAG Glyma12g03170.1 1 2 U2 GTGAGTTG..GCAG Glyma11g10920.1 1 2 U2 GTGAGTTA..GTAG Glyma11g10970.2 2 2 U2 GTGAGTTA..GTAG Glyma11g10970.3 3 2 U2 GTGAGTTA..GTAG Glyma11g10970.1 3 2 U2 GTGAGTTA..GTAG AC122726_14.2 0 2 U2 GTCAGTTT..GCAG LOC_Os04g56770.1 1 2 U2 GTAAAGCC..CTAG GRMZM2G047321_T01 1 2 U2 GTAAGGAA..CCAG fgenesh1_pg.C_chr_6002546 1 2 U2 GTAAGGAA..CCAG 7: 165-165 e_gw1.3.614.1 1 0 U2 GTAATAAA..GAAG 8: 172-172 LOC_Os04g56770.1 2 1 U2 GTATAATC..CTAG
Lj~chr1.LjT04O21.100.nd Pp~estExt_Genewise1.C_1090004 Pp~e_gw1.3.614.1 Pp~e_gw1.278.27.1 At~AT3G07860.1 Pt~fgenesh4_pm.C_LG_II000072 Vv~GSVIVP00015525001 Gm~Glyma12g03170.1 Gm~Glyma11g10920.1 Gm~Glyma11g10970.2 Gm~Glyma11g10970.3 Gm~Glyma11g10970.1 Lj~LjSGA_146705.1 Mt~AC122726_14.2 Mt~AC146776_33.2 Mt~AC125476_1.2 Os~LOC_Os04g56770.1 Zm~GRMZM2G047321_T01 Sb~fgenesh1_pg.C_chr_6002546	LVTDTDYLRDY-------GIKDGN------------------------------------ LVDDDARLAGF-------GIRNNDQ----LRFEHHVSLRDEGQYLRAKKRRFFHGLIKTD LLDDDARLHDF-------GIRKNDE----LRFEHHVATREEGRHSRAKKRRFFHGLRKT- LVDDDARLHDF-------GIRNNDE----LRFEHHVAAREEFRHPRVMKPRFFYGPHKN- LLDDNAVLQDV-------GIRNNSQ----VTFMPYVMKKGRGRHSKRKKHRLFRSLHKTS LLDDNSALQDS-------GIRNNSQ----VHFASYVMSKDSQRHSKRRKHRFFHGLNKRA LINDGSALQDF-------GIHNNSQ----VHFVPFIMSKGSQRHSRRRKHRFFHGLNKRI LLDDNDALQHF-------GVRNNSQ----VQFVSYVMTKESRRHSKRRKHHFFHGLNRRS LLDDNEALQNF-------GVRNNSQ----VQFVSYVMTKESRRHSKRRKHRFFHGLNKRS LLDDNEALQNF-------GVRNNSQ----VQFVSYVMTKESRRHSKRRKHRFFHGLNKRS LLDDNEALQNF-------GVRNNSQ----VQFVSYVMTKESRRHSKRRKHRFFHGLNKRS LLDDNEALQNF-------GVRNNSQ----VQFVSYVMTKESRRHSKRRKHRFFHGLNKRS LLNDDDALQNF-------GVRNNSQ----VCSL--------------------------- LLNDDDVLQNL-------GVRNNSQ----VS-STYLC------------HCWNCEIE--- LLNDDDVLQNL-------GVRNNSQ----VS-STYLC------------HCWNCEIE--- LLNDDDVLQNL-------GVRNNSQ----IHFVPYVMTKESRRHSKRRKHRFFHGLSKLS EIPTLLPLNLHIWCLTCWGFEPQPTEYVICLFLAARYVQGISKALKKKKTPLFPWSS--- LIEDNSTLSSY-------GVRNNSK----VCFSPHVMSRVHRKHSRRRKHRFFHGLSRKA LINDNSALSAY-------GVRNNSK----------------------KIYMFISGRPT--	9: 197-197 LOC_Os04g56770.1 3 2 U2 GTAAGTTC..TCAG 10: 204-204 estExt_Genewise1.C_1090004 2 0 U2 GTGAGTTA..ACAG e_gw1.3.614.1 2 0 U2 GTATGGAT..GCAG e_gw1.278.27.1 2 0 U2 GTATGTTA..ACAG AT3G07860.1 2 0 U2 GTTAAACA..ACAG fgenesh4_pm.C_LG_II000072 2 0 U2 GTTTCAGT..GCAG GSVIVP00015525001 2 0 U2 GTTCTAGC..GCAG Glyma12g03170.1 2 0 U2 GTTAGCCT..GCAG Glyma11g10920.1 2 0 U2 GTTTGCCT..GCAG Glyma11g10970.2 3 0 U2 GTTTGCCT..GCAG Glyma11g10970.3 4 0 U2 GTTTGCCT..GCAG Glyma11g10970.1 4 0 U2 GTTTGCCT..GCAG GRMZM2G047321_T01 2 0 U2 GTAGGTCT..CTAG fgenesh1_pg.C_chr_6002546 2 0 U2 GTATTTCT..ACAG 11: 208-208 LOC_Os04g56770.1 4 1 U2 GTGAGCTA..CTAG
Lj~chr1.LjT04O21.100.nd Pp~estExt_Genewise1.C_1090004 Pp~e_gw1.3.614.1 Pp~e_gw1.278.27.1 At~AT3G07860.1 Pt~fgenesh4_pm.C_LG_II000072 Vv~GSVIVP00015525001 Gm~Glyma12g03170.1 Gm~Glyma11g10920.1 Gm~Glyma11g10970.2 Gm~Glyma11g10970.3 Gm~Glyma11g10970.1 Lj~LjSGA_146705.1 Mt~AC122726_14.2 Mt~AC146776_33.2 Mt~AC125476_1.2 Os~LOC_Os04g56770.1 Zm~GRMZM2G047321_T01 Sb~fgenesh1_pg.C_chr_6002546	----------- RKTPASTASFS ----------- ----------- S---------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- ----------- NPAL------- -----------
		3' UTR introns