SRGD Gene ID 1102 BLASTp at NCBI n/a n/a  
OrganismsGm ,At ,Vv ,Os ,Zm ,Pp ,Sb ,Pt
Gene count8
Cintron count34
Cintron classesU2 ,im ,em ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
------------------------------------------------------------
MPSPPPPPQPSPPELPISEHEDEIMAAVEANPVVVVIGETGSGKSTQLSQILHRRGYTRR
------------------------------------------------------------
------------------------------------------------------------
-----------MANLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKS
------------------------------------------------------------
-----------MAKLPILQFEEKIIDIVEQNSVVVIIGETGSGKSTQLSQILYRRGYTNS
----------MASHLPIVQFEDKIMKTVEDNAVVVIIGETGSGKSTQLSQMLHRRGYTKS
2: 11-11
AT1G27900.1 0 0 U2 ..
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
------------------------------------------------------------
GAIAVTQPRRVAAVSVSRRVAQELSVPLGDEVGYAIRFEDRTSEKTCIKYLTDGVLLRES
------------------------------------------------------------
------------------------------------------------------------
GVIAITQPRRVAAVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRES
------------------------------------------------------------
GNVAVTQPRRVAAVSVARRVAQELGVQLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRES
GIIAVTQPRRVAAVSVARRVAQELGVTLGEEVGYAIRFEDRTSDLTRIKYLTDGVLLREC
3: 76-76
LOC_Os11g20554.1 0 2 U2 GTAACCCG..GCAG
fgenesh4_pm.C_LG_X000172 0 2 U2 GTCTCAAC..ACAG
4: 107-107
LOC_Os11g20554.1 1 2 U2 GTAAGCCT..GCAG
fgenesh4_pm.C_LG_X000172 1 2 U2 GTAATGGA..GCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
------------------------------------------------------------
LSDPELKQYSVIILDEAHERSLNTDILLGLMKRLIKDRASDLKVLITSATLDGLKVSKFF
------------------------------------------------------------
------------------------------------------------------------
LSNPMLDDYSVIILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFF
---------------------------MGLMRRLVNIRSSDLKVLITSATLDGEKVSKFF
LSNPDLSQYSVIILDEAHERSLNTDILLGLMKRLVKMRASNLKVLITSATLDGSKVSRFF
LSNPELNQYSVIILDEAHERSLNTDILMGLVKRLVKMRASKLKVLITSATLDGEKVSEFF
5: 142-142
LOC_Os11g20554.1 2 2 U2 GTATGCGT..ACAG
fgenesh4_pm.C_LG_X000172 2 2 U2 GTAAGGAA..TCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
------------------------------------------------------------
SGCPVLNIPGTLFPVEKFYSTEHPTNYIESSLRTAIDIHVKESPGDVLIFMTGKDDIDKM
------------------------------------------------------------
------------------------------------------------------------
SGCPVLNVPGKLYPVEILYSKERPVSYIESSLKVAIDIHVREPEGDILIFMTGQDDIEKL
ADCPVLNVPGKLYPVEVLYSRERPSSYLESSLKTALDIHIREPEGDILIFMTGQDDIEKL
SNCPILTVPGKLFPVEILYSAELPKSYIESSLKTAIDIHVREPEGDVLIFMTGQDDIEKL
SDCPVLNVPGKLYPVEILYSEERPKSYIESSFRTAMDIHVREPEGDVLIFMTGQDDIDKL
6: 215-215
LOC_Os11g20554.1 3 1 U2 GTAATTAT..ACAG
Glyma05g27850.1 2 1 U2 GTATGGCA..GCAG
fgenesh4_pm.C_LG_X000172 3 1 U2 GTATGAAA..TCAG
7: 233-233
LOC_Os11g20554.1 4 0 U2 GTTAGCAG..TCAG
Glyma05g27850.1 3 0 U2 GTGAACAT..GTAG
fgenesh4_pm.C_LG_X000172 4 0 U2 GTGATGTT..GCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
--MLEERVLMLEEGSCLDAIILPLHASLAPEVQ---------------------------
VSKLEERIQNLEEGSCMDALVLPLHGSLPPEQQ---------------------------
------------------------------------------------------------
------------------------------------------------------------
VSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQ---------------------------
VSKLEDKVRALEEGSCMDAIILPLHGSLPPELQAI----FFLVLSIANLTNLHLKIVAGL
VVKLEERVRSLEEGSCMDAIILPLHGSLPPELQAS----FF-------------------
VSKLEDRVQSLEEGSCMDAIILPLHGSLPPELQAGLSFLLF-------------------
8: 272-273
LOC_Os11g20554.1 5 0 U2 GTAATTCA..ATAG
Glyma05g27850.1 4 1 U2 GTAGTTAC..TTAG
9: 280-280
fgenesh4_pm.C_LG_X000172 5 0 U2 GTCCACAA..TCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
-ARVFQPAPPNCRRIIVATNVAETSLTVDGVVYVIDPGFVKQRNYNPNTGMDSLSVVRIS
-VRVFAPAPPNCRRFIVATNVAETSLTVDGVVFVIDCGYVKQRQYNPSSGMYSLDVVQIS
------------------------------------------------------------
--------------------------------------------------MYSLDVVQIS
-VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQIS
GVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMYSLDVVQIS
-VRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPLTGMYSLDVVQIS
-VRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSTGMYSLDIVPIS
10: 300-300
Glyma05g27850.1 5 0 U2 GTGAAACT..TCAG
11: 330-330
LOC_Os11g20554.1 6 2 U2 GTAAGCAG..CTAG
Glyma05g27850.1 6 2 U2 GTAAGGAC..TTAG
fgenesh4_pm.C_LG_X000172 6 2 U2 GTAAGGAC..ACAG
12: 359-359
LOC_Os11g20554.1 7 2 U2 GTAAATAC..CAAG
Glyma05g27850.1 7 2 U2 GTAAGCAA..GCAG
fgenesh4_pm.C_LG_X000172 7 2 U2 GTAAGCAG..GCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
RVQATQRAGRAGRTRPGKCYRLYPMSAFEEEFLPATVPEIQRSSLTGAVLHLKFLDLPNV
RVQADQRAGRAGRTRPGKCYRLYPISIYQKEFLEATIPEIQRSSLAGSVLYLKSLDLPDI
------------------------------------------------------------
RVQADQRAGRAGRTRPGKCYRLYPISIYQNEFLEATVPEIQRSSLAGSVLYLKSLNLPDI
KVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDI
KVQANQRAGRAGRTRPGKCYRLYPSRIYNDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDI
KVQANQRAGRAGRTRPGKCYRLYPSMVYHDDFLDVTVPEIQRSSLAGSVLYLKSLDLPDI
KVQANQRAGRAGRTRPGKCYRLYSSEVYQEELLDVTVPEIQRSSLAGSVLYLKSLDLPDI
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
DILHFDFIDPPLRESLEDALRQLFAIDAIGPDGKITALGKRIAELPLEPALGRTLLAAED
NILKFDFLDPPSRESLEDALRQLYLIDAIDENGQITDVGRIMAELPLEPSLSRTLIEANE
------------------------------------------------------------
NILKFDFLDPPSRESLEDALRQLYLIDAIDENGQITDVGRVMAELPLEPSLSRTLIEANE
DILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANE
DILKFDFLDPPSSESLQDALKQLFLIDAIDENGAITSIGQKMAELPLEPSLAKTLMEANN
DILKFDFLDSPSSESLQDALRQLYLIDAIDENGSITSVGRTMAELPLESSLSRMLMEANE
DILKFDFLDPPSFESLEDALKQLYLIDAIDDTGLITSVGQTMAELPLEPSLSRTLMEANE
13: 431-431
LOC_Os11g20554.1 8 1 U2 GTAAGATA..GCAG
Glyma05g27850.1 8 1 U2 GTAACATA..GCAG
fgenesh4_pm.C_LG_X000172 8 1 U2 GTAAGCAA..TCAG
14: 462-462
LOC_Os11g20554.1 9 1 U2 GTATTCTC..GCAG
Glyma05g27850.1 9 1 U2 GTACTTGA..GCAG
fgenesh4_pm.C_LG_X000172 9 1 U2 GTAATGGA..TCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
LGCLSQALTVAAMLSAETIFMQGP-KKGEDRKRSRED-QQLPNGNNYGDHVQYLQIYELW
LGCLSQALTVAAVLSAEITFRSTR-SKDMEGKRKR---QELPDGSGWGDHIQLLQIFESW
--------------------------------------------MGW-------------
LGCLSQALTVASILSAEITLRSVS-KDVVDGKRKR---QELPDGSGWGDHIQLLQIFESW
TGCLSQALTVVAMLSAETTLLPAR-SKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESW
YGCLYEALTVAAMLSAETTLLPGQ--RKTEKKRKHTI-SNLPDGSGLGDHIQLLQIYECW
CGCLSQALTVAAMLSAETTLLPGR-SKSTEKKRKHTP-TDLPDGSGWGDHIQLLQIFEQW
NGCLSQALTVAAMLSAETTLLAGQSSKSNEKKRKHPP-PDLPDGSGYGDHVQLLQIFEQW
15: 503-503
LOC_Os11g20554.1 10 2 U2 GTGGGCAT..ACAG
Glyma05g27850.1 10 2 U2 GTGGACTA..GCAG
fgenesh4_pm.C_LG_X000172 10 2 U2 GTTAGTTT..GCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
KKNNFDIKWCRSNNLNIRSMLFAKDVRRQLALITSR--KKFEDDEAMQKIKSA----RSL
DRTGYDPRWCSDHELQVRGMKFSKDVRNQLSQIIQKIAKGSTDVQAKKERKSD-PDYRKL
--------------------------------------RSSTDVHARKSRKSD-PDYRKL
DQTGYDTKWCSHHDLQVRGMKLSKDVRNQLCQIIQKIAKGSTDVDARKSRKND-PDYRKL
DRTNYDPVWCKENGMQVRGMVFVKDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKL
DQTDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPLDVRANGKREEFRQDYRNL
DQTDYDPNWCKDHGLQVRGMMFVKDVRKQLSQIMQKMARGSLDVRAKERWKESRQDYKNL
DQNEFDIGWCKDKGLQVRGMMFVKDVRRQLSQLMQKIAKERQ------------RDYKNL
16: 555-555
LOC_Os11g20554.1 11 0 U2 GTGAATGA..GCAG
Glyma05g27850.1 11 0 U2 GTACCTAT..GAAG
fgenesh4_pm.C_LG_X000172 11 0 U2 GTAATTTT..GTAG
17: 578-578
LOC_Os11g20554.1 12 1 U2 GTCGGTGA..TTAG
estExt_fgenesh1_pg.C_chr_100539 0 1 U2 GTCCCGTT..TTAG
Glyma05g27850.1 12 1 U2 GTTAGTAT..ATAG
fgenesh4_pm.C_LG_X000172 12 1 U2 GTTAGTAA..AAAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
RKALCQGYACRLAQRMPKHNGYHTVGNKSQLVQLHPATSPLQVDEDGLYPEWILYHELMA
RRALCVGYGNQLAERMLHHNGYHTVGYRAQLVQVHP-FSVLEGDEYGKLPVYVVYHELIN
RRALCVGYGNQLAERMLHHNGYHTVGYRSQLVQVHP-SSVLEGDEYGKFPMYVIYHELIC
RRALCVGYGNQLAERMLHHNGYHTVGYRTQLVQVHP-SSVLEGDEYGKFPMYVIYHELIS
RKALCVGNANQIAERMLRHNGYRTLSFQSQLVQVHP-SSVLSADNDGMMPNYVVYHELIS
RKALCMGYANQLAERKMHHNGYRTLGFQAQVVQVHP-SSVLSLDDLGKFPDYVVYHELIA
RKALCAGYAGQLAERMIHHNGYRTLGLKSQLVQVHP-SSVLRADEDGMLPNYVLYHELVV
RKALCVGYANKLAERMVQHNGYRTIGFKPQLVQVHP-SSTLKTDEDGMFPNYVVYHELIA
18: 632-632
LOC_Os11g20554.1 13 0 U2 GTATTGAC..GCAG
estExt_fgenesh1_pg.C_chr_100539 1 0 U2 GTATGTAA..GCAG
Glyma05g27850.1 13 0 U2 GTAATATA..CTAG
fgenesh4_pm.C_LG_X000172 13 0 U2 GTATTGAA..TCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
SSRAFLRHVCVVEKEWVVPILEKLQNINIRSLSGLSGHESQKEKISEGEKKAIASNPIDQ
TTRPFMRNVSAVDQSWVKPILKKLERLDMNKLSGGSSGSKDPEPL-EDKQVSSPKKAMDV
TTRPYMRNICAVEQAWVEPILKKLEKLDVNKLSGGSSAPKDSELLVENKQVNSLKKDMDV
TTRPYMRNVCAVEQAWVQPILKKLDKLDINRLSGGSSAPGDSELLGDNKQVNSSKNDVGV
TTRPFMRNVCAVDMAWVAPIKRKIEKLNVRKLSGGPAPSFKVP----EEKTELSKNNAET
TPRPYMRNVCAVEMRWVIPIINKLKSLDVYKLSGGVHHVEEEP---EKKLPDFPKKDVEV
TTRPYMRNVCAVEMSWVMPILKKLENLNINKLSGGSNQVEDRT---EEKSSDSPKKSVDV
TSRPFMRNVCAVEMPWVNPILKKLEKLNIDKLSGGSGHSIREES--ETKVSSLPKKEEAV
19: 691-691
LOC_Os11g20554.1 14 2 U2 GTATGAAA..ACAG
estExt_fgenesh1_pg.C_chr_100539 2 2 U2 GTAAAGTG..GCAG
Glyma05g27850.1 14 2 U2 GTAGGTAA..GCAG
fgenesh4_pm.C_LG_X000172 14 2 U2 GTAAATTT..GCAG
Pp~estExt_gwp_gw1.C_1240010
Os~LOC_Os11g20554.1
Sb~estExt_fgenesh1_pg.C_chr_100539
Zm~GRMZM2G000371_T01
At~AT1G27900.1
Gm~Glyma05g27850.1
Vv~GSVIVP00035061001
Pt~fgenesh4_pm.C_LG_X000172
----EARSVDVNAARARFLARKQSK-----SIKSSK
KQ--SDVDSKIQAARERYLARKGKK-----------
KQ--SEVDSKIQAARERYLARKDKRKFLIWTGRKRA
KQ--SEVDSKIQAARERYLARKGKK-----------
PAVSENVESRIEAARERFLARKGQK-----------
ASTADDRESRIQAARERFLARKGKK-----------
ARPPNDAESRIQAARDRFMARKAKR-----------
TGVPDDRESRIQAARDRFLARKGKK-----------
20: 741-741
estExt_fgenesh1_pg.C_chr_100539 3 1 U2 GTAAGAAA..ACAG


3' UTR introns