SRGD Gene ID 1096 BLASTp at NCBI n/a n/a  
OrganismsAt ,Lj ,Sb ,Os ,Pt ,Gm ,Zm
Gene count8
Cintron count7
Cintron classesU2 ,im ,em ,absent
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 ------------------------------------------------------------
------------------------------------------------------------
AATTTFTSSPPTTSSASTVVATTATTNLATTTTNLYHHCFSSQLVVVEATTVVVGVVVAA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 ------------------------------------------------------------
------------------------------------------------------------
MTMMVVVKLIGEATMTLVGTAKLAMMVVVDDIVMVMVAAVVVDDIVMVMVAATTVKVVAA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 ---------------MAFSFNRELRI-SVTIVTFFFLLVSFPGNTYSEEDDSEVGGEGG-
------------------MAQYAITF-RLWVLSAVLVGVSIFCCNLGKADEGEDVPQTG-
TMIVMVVVATIVMVVAMKAMAFQVSV-RRWILAFALLHVCLFWKNFGNGDDYMPETQEG-
------------------MALFRVNV-RRWILTYAILYVCVFGKNFGNADEDESEAQTG-
------------------MAFFQVSV-RRWILTFAILYVCVFGKNFGNADEDESEAQTG-
------------------MAWVSMTW--CWHRSFLLMMACV--CSW--------------
------------------MASVCSRP-PFSFLAAACIA-CFICCFLIRLPAACCSSAGPR
------------------MASLCSRPQQFWFLTAVA---CIFCCF---------------
2: 135-135
AT5G49350.1 0 0 U2 ..
3: 165-165
estExt_fgenesh4_pg.C_LG_VIII0955 0 1 U2 GTATGTGA..ACAG
Glyma09g04360.1 0 1 U2 GTATGTTA..ATAG
Glyma15g15390.1 0 1 U2 GTATGTTA..ATAG
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 ---GIGGGGTGFGGGGTGVGGGGTGFGGGGLGAGGSGGGGAGGLGSGGTGVGGGGGLGAG
----------------TGIIG---------------------------------------
---------TGFGGGGGGGAG---------------------------------------
------------GGGFGVVGG---------------------------------------
------------GGGYGGVGG---------------------------------------
------------------------------------------------------------
FFACSALKSSHIRHGSMLLIT---------------------------------------
------------------------------------------------------------
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 GSGGGGAGGLGGGGTGVGGGGTGGGTGFNGGGTGFGPFGGGGLGTGGGGAGGLGGGGGNG
--------------------------------------GVPQTGTG-TIGGVPQTGTGTG
--------------------------------------VGGGSGAG-IGGGGGGIGGGSG
--------------------------------------GFGGAGAGVGSGGGFGAGGGTG
--------------------------------------GFGGAGAG-VVGGGGGFGAGGG
-----------------------------------------------SITCCKSDEAAAG
--------------------------------------ALVRTYVRNSCICRIADGGAAA
------------------------------------------------------SLTAAA
4: 293-293
LOC_Os01g14990.1 0 1 U2 GTTTACAC..GCAG
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 GFGGGG--LGGGGLGGEDPPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEE
TIGGVPQTGTGTGIVDADPAEIVAKALLCFSDKYLYSSCEVAYRLTQTGKLNVPPEYADS
GVGVGG-SAGEGGAGIGDPSQIVTKALLCFNDKYIYQSCEESYRLNENGNLEVPTEKTDE
GFGAGG-----GGYGSGDPAQIVSKALLCFNDKNIYRSCEETCRLNENGNLNVPAEKTDT
GFGAGG-----GGVGSGDPAQIVSKALLCFNDKNIYRSCEETCRLNENGNLNVPVEKTDT
AFHGQK----------RSTEDIVARAIICFSDRYIFSGCQGQYRLGPEGALRVPAAAAEA
AFHGQK----------TDAASIVGRALSCFNDRYIYSGCQGALRLGPEGALDVPPGSVDA
AFHGQK--------GDIAVADIVGRALFCFNDRYIYSGCQGSFRLGPQGALDVPPGSADA
5: 333-333
estExt_fgenesh4_pg.C_LG_VIII0955 1 0 U2 GTAAGTTG..TCAG
Glyma09g04360.1 1 0 U2 GTGAGTGT..TCAG
Glyma15g15390.1 1 0 U2 GTGAGTGC..TCAG
LOC_Os01g14990.1 1 0 U2 GTAAGCAC..GCAG
GRMZM2G421742_T01 0 0 U2 GTGAGTGT..CAAG
fgenesh1_pg.C_chr_3001060 0 0 U2 GTAAGTGT..TCAG
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 FCEGPCFSETHLALNCI-EEIIHHYRFFNRATIHDIRETLKSG-CSYGPERGVF-NVLEH
YCGGPCLVETHLVLSCI-ENIMKHFVFYNKATIEDIRDTIKAG-CGYGPERGNF-DVSEH
FCEGPCLSETNLVLSCI-DNIFSHFIFYNRATIQDIKETVQAG-CGYGPQRGNF-DVSEH
FCEGPCLSETNLVLNCL-DNVFSNFIFYNRATIQDIRETIEAG-CGYGPQRGNF-NVAEH
FCQGPCLSETNLVLNCL-DNVFSNFIFYNRATIQDIRETIEAG-CGYGRQRGNF-NVAEH
FCGGPCLAETRLVLGCV-DGIMDSFRFYNGASVRDVRLALDRG-CG---LRGDF-DVLRR
FCGGPCLVETHLVLRCVDDGIVAGFRFYNGASAADVRLVLARGWCGRSGLRGDFDDVLQR
FCGGPCLAETELVLRCV-DGIMSSFRFYNGASAADVRFALDRG-CGYSALRGHF-DVLQR
6: 410-410
estExt_fgenesh4_pg.C_LG_VIII0955 2 1 U2 GTATTTTA..CAAG
Glyma09g04360.1 2 1 U2 GTATATCG..GCAG
Glyma15g15390.1 2 1 U2 GTATCGTT..GCAG
At~AT5G49350.1
Pt~estExt_fgenesh4_pg.C_LG_VIII0955
Lj~CM0385.260.nd
Gm~Glyma09g04360.1
Gm~Glyma15g15390.1
Os~LOC_Os01g14990.1
Zm~GRMZM2G421742_T01
Sb~fgenesh1_pg.C_chr_3001060
 IE-----------DEEENA-------SEKIKSRFGPLLFIIALLL----
LQ-----------FEENNAFKT----ANQILLGVGFMFGGHALLL----
LQ-----------AEESKALKATT-TTSHVVMGIALVITGRALLL----
IQ-----------REESKAPKA----TSHVAMGLAIIVMRRALMPLNFT
IQ-----------REESKAPKA----TSHVVMGLAIVMMGRALLPLNFT
LG--------GDGYDYGGGPRG-------LVTTPAPLLLGAVVAVLLWG
LG--------GDGHLYGRGSDA---RVSSLAQAMPLLLSAAAAVVLVWT
VGAGADGRNYGDGYFYGRGDAAARRSVNDLVAVAPLLLLSAAAAILVWA