SRGD Gene ID 109 BLASTp at NCBI n/a n/a  
OrganismsAt ,Zm ,Mt ,Vv ,Os ,Gm ,Pp ,Lj ,Sb ,Pt
Gene count26
Cintron count8
Cintron classesU2 ,im ,em ,absent ,GC
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5' UTR introns
Cluster Intron #: Alignment Start-Stop
Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~gw1.123.70.1
Pp~fgenesh1_pg.scaffold_42000167
Pp~gw1.136.87.1
Sb~estExt_fgenesh1_kg.C_chr_10212
Zm~GRMZM2G165901_T02
Zm~GRMZM2G165901_T01
Zm~GRMZM2G165901_T03
Sb~fgenesh1_pm.C_chr_8000625
Zm~GRMZM2G080603_T01
Zm~GRMZM2G080603_T02
Zm~GRMZM2G080603_T03
Os~LOC_Os03g46770.1
Os~LOC_Os12g43600.1
Lj~chr3.CM0091.670.nd
Gm~Glyma11g12480.1
Mt~AC134242_43.2
Lj~chr3.CM0091.630.nd
At~AT2G21660.1
Gm~Glyma11g12510.2
Gm~Glyma11g12490.1
Pt~gw1.IX.1795.1
Pt~estExt_Genewise1_v1.C_LG_IV0527
Lj~chr1.CM0178.490.nc
Mt~AC134242_17.2
Vv~GSVIVP00036381001
Gm~Glyma06g01470.1
---------EFRCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFA
---MAGGE-EFRCFVGGLAWATTDGRLEGAFRPFGEVVQSKVISDRETGRSRGFGFVTFA
---------EFRCFVGGLAWATTDDRLEQAFRPFGDVIQSKVISDRETGRSRGFGFITFA
---MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFS
---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS
---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS
---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS
---MAASDVEYRCFVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFS
---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS
---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS
---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS
---MAAPDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFS
---MAAPDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFS
-----MADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFT
---MASADVEYRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFA
-----MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFA
---MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA
---MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK
---MASADVEFRCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFA
MLSMASAYVEYRCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFA
-----SAEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFG
----MAAEVEYRCFVGGLAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFN
---MASAEIEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFA
---MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFA
---MASAEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFS
---MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFA
2: 3-5
AC134242_43.2 0 0 U2 ..
AC134242_17.2 0 0 U2 ..
3: 40-40
estExt_fgenesh1_kg.C_chr_10212 0 0 U2 GTCTGTTT..GCAG
GRMZM2G165901_T02 0 0 U2 GTCTGCTT..GCAG
GRMZM2G165901_T01 0 0 U2 GTCTGCTT..GCAG
GRMZM2G165901_T03 0 0 U2 GTCTGCTT..GCAG
fgenesh1_pm.C_chr_8000625 0 0 U2 GTCCGTCG..GCAG
GRMZM2G080603_T01 0 0 U2 GTCCGTTC..GCAG
GRMZM2G080603_T02 1 0 U2 GTCCGTTC..GCAG
GRMZM2G080603_T03 0 0 U2 GTCCGTTC..GCAG
LOC_Os03g46770.1 0 0 U2 GTTCGCCC..GCAG
LOC_Os12g43600.1 0 0 U2 GTCCGATG..GCAG
chr3.CM0091.670.nd 0 0 U2 GTCCGTTG..GCAG
Glyma11g12480.1 0 0 U2 GTCCGCAT..GTAG
chr3.CM0091.630.nd 0 0 U2 GTCCGTTT..GCAG
Glyma11g12510.2 0 0 U2 GTCCGTTT..GCAG
Glyma11g12490.1 0 0 U2 GTCCGTTT..GCAG
estExt_Genewise1_v1.C_LG_IV0527 0 0 U2 GTCCGTTT..GCAG
chr1.CM0178.490.nc 0 0 U2 GTCCGTTG..GCAG
GSVIVP00036381001 0 0 U2 GTCTGTTT..ACAG
Glyma06g01470.1 0 0 U2 GTCCGTTA..TCAG
Pp~gw1.123.70.1
Pp~fgenesh1_pg.scaffold_42000167
Pp~gw1.136.87.1
Sb~estExt_fgenesh1_kg.C_chr_10212
Zm~GRMZM2G165901_T02
Zm~GRMZM2G165901_T01
Zm~GRMZM2G165901_T03
Sb~fgenesh1_pm.C_chr_8000625
Zm~GRMZM2G080603_T01
Zm~GRMZM2G080603_T02
Zm~GRMZM2G080603_T03
Os~LOC_Os03g46770.1
Os~LOC_Os12g43600.1
Lj~chr3.CM0091.670.nd
Gm~Glyma11g12480.1
Mt~AC134242_43.2
Lj~chr3.CM0091.630.nd
At~AT2G21660.1
Gm~Glyma11g12510.2
Gm~Glyma11g12490.1
Pt~gw1.IX.1795.1
Pt~estExt_Genewise1_v1.C_LG_IV0527
Lj~chr1.CM0178.490.nc
Mt~AC134242_17.2
Vv~GSVIVP00036381001
Gm~Glyma06g01470.1
DENSMNEAIKDMNGKELDGRNITVNQAQSRGG-GSGG-----------------------
DENSMNAAIKEMNGQELDGRNITVNQAQSRGG-GGGGG------GGGGGY----------
DENAMNEAIKEMNGKELDGRNITVNQAQSRGG-GGGG-----------------------
SEQSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGYG---GGGGGYGGRREGGGYG
SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGY----GGGRG-----------
SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGYGGGRGGGGGY----------
SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGG-----------------------
TEEAMRSAIEGMNGKELDGRNITVNEAQSRGGRGGGGGGGYGGGRGGG------------
TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGGGGGYGGGRGGGGY----------
TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGGGGGYGGGRGGGGY----------
TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGG-----------GY----------
SEQSMRDAIEGMNGKELDGRNITVNEAQSRRS-GGGGGGYG---GGGGGY----------
SEQAMRDAIEGMNGKELDGRNITVNEAQSRRS-GGGGGGGYGQRGGGGGY----------
SEEAMRSAIEGMNGNELDGRNITVNEAQARGG-CGGG-----------------------
SEDSMRDAIEGMNGQNLDGRNITVNEAQSRGS-RGGGGGGY---GSGGGYN--RSGGA--
NEKSMNDAIEAMNGQDLDGRNITVNQAQSRGS-GGGGGGG----RGGGGY----------
SEQSMKDAIEGMNGQDIDGRNVTVNEAQARGR-GGG--------GGGGGY-----GGGRR
DEKAMKDAIEGMNGQDLDGRSITVNEAQSRGS-GGGGGHRG---GGGGGY---RSGGG--
SEQSMKDAIAGMNGQDLDGRNITVNEAQTRAS-RGGG-----------------------
SENSMKDAIEGMNGQNLDGRNITVNEAQSRGS-RGG------------------------
NEKAMRDAIDGMNGQDLDGRNITVNEAQSRGS-GGGG-------GGGGGYN--RNSGG--
NEKAMRDAIDGMNGQDLDGRNITVNEAQSRGS-GGGGGGGGYSRGGGGGY----------
SEQAMKDAIEAMNGQNLDGRNITVNEAQSRGS-SGGGGR--YG-GGGGGYG----GGG--
DEKSMRDAIEGMNGQDMDGRNITVNEAQSRGS-GGGG-----G-RGGGGYG----GGG--
SEQSMRDAIEGMNGQNLDGRNITVNEAQSRGS-GGGGGGG----GGGGGY-----RGG--
TEQAMRDAIEGMNGQNLDGRNITVNEAQSRGK-GGGGGGGGYG-GGGGGY-----GGG--
4: 90-94
GRMZM2G165901_T03 1 1 U2 GTGGCGGT..GGCG
GRMZM2G080603_T03 1 1 GC GCGGCGGC..GGAG
Pp~gw1.123.70.1
Pp~fgenesh1_pg.scaffold_42000167
Pp~gw1.136.87.1
Sb~estExt_fgenesh1_kg.C_chr_10212
Zm~GRMZM2G165901_T02
Zm~GRMZM2G165901_T01
Zm~GRMZM2G165901_T03
Sb~fgenesh1_pm.C_chr_8000625
Zm~GRMZM2G080603_T01
Zm~GRMZM2G080603_T02
Zm~GRMZM2G080603_T03
Os~LOC_Os03g46770.1
Os~LOC_Os12g43600.1
Lj~chr3.CM0091.670.nd
Gm~Glyma11g12480.1
Mt~AC134242_43.2
Lj~chr3.CM0091.630.nd
At~AT2G21660.1
Gm~Glyma11g12510.2
Gm~Glyma11g12490.1
Pt~gw1.IX.1795.1
Pt~estExt_Genewise1_v1.C_LG_IV0527
Lj~chr1.CM0178.490.nc
Mt~AC134242_17.2
Vv~GSVIVP00036381001
Gm~Glyma06g01470.1
--------------------------GGGGGYN----NRQGGGGGYGGG-----------
--------------GRREQGGGGY----GGGYGGSRGGGDREGSGYGGS-RGGGYGG---
------------------------------------------------------------
GGGG--------GYGGRREGGGGY---GGGGYG-------GGGGGYGGR-REGGGGY---
-------------GGGRREG-------GGGGY--------GGGGGYGGR-RE--------
-------------GGGRRDGGY----GGGGGYG---GRREGGGGGYGGG---GGYGGRRE
------------------------------------------------------------
------------GGYGRRDGGGGGYGGGGGGYGGGRGGYGGGGGGYGGG--GGGY-----
------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY-----
------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY-----
------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY-----
-------------GGGRGGGGYGG--GGGGGYG-RREGGYGGGGGYGGG-RGGGGGG---
------------GGGGGYGGG------GGGGYGQRREGGYGGGGGYGGG-RGGGGG----
------------------------------------------------------------
-GGY----------GGRREGAYNR-----------------NGGGYGGD-RDHRYGPYG-
------------GGGGGGYGGERRGYGGGGGYG-G-----GGGGGYGE--RRGGGGGYSR
EGGY--------GGGG---GGSRYSGGGGGGYG----G--SGGGGYGGR-REGGGGGYGG
-GGYSGGGGSYGGGGGRREGGGGY-SGGGGGYS-SRG---GGGGSYGGG-RREGGGGY--
---------------------------GGGGF--------GSGGGYGGG-RDRGYGG---
-------------YGGRREGGYNR---GGGGY---------GGGGYGGD-RDCGYG----
-GGY--------GGGGRR--------EGGGGYS-------RGGGGYGGG-----------
--------------GGRREGGGGGYSRGGGGYGGGGGGYGGGGGGYGGG-RDRGYG----
-GGY----GGREGGGG---GGYNR-NGGGGGYG-GGGYG-GGGGGYGGG-RDRGYGGGE-
-GGY--------GGGGRREGGYNRSSGGGGGYG-G-----GGGGGYGGG-RDRGYGD---
-GGY--------GGGGRREGGYSR--GGGGGYG-------GGGGGYGGGSRDRGYG----
-GGYSRGGGGYGGGGGRREGGYNR-NGGGGGYG-GGGGGYGGGGGYGGGGRDRGYGG---
5: 128-128
chr1.CM0178.490.nc 1 1 U2 GTGGCGGT..GGCC
6: 134-134
GRMZM2G165901_T02 1 1 GC GCGGTTAT..GGCG
7: 161-161
Glyma11g12510.2 1 1 U2 GTGGTGGA..GGAG
Pp~gw1.123.70.1
Pp~fgenesh1_pg.scaffold_42000167
Pp~gw1.136.87.1
Sb~estExt_fgenesh1_kg.C_chr_10212
Zm~GRMZM2G165901_T02
Zm~GRMZM2G165901_T01
Zm~GRMZM2G165901_T03
Sb~fgenesh1_pm.C_chr_8000625
Zm~GRMZM2G080603_T01
Zm~GRMZM2G080603_T02
Zm~GRMZM2G080603_T03
Os~LOC_Os03g46770.1
Os~LOC_Os12g43600.1
Lj~chr3.CM0091.670.nd
Gm~Glyma11g12480.1
Mt~AC134242_43.2
Lj~chr3.CM0091.630.nd
At~AT2G21660.1
Gm~Glyma11g12510.2
Gm~Glyma11g12490.1
Pt~gw1.IX.1795.1
Pt~estExt_Genewise1_v1.C_LG_IV0527
Lj~chr1.CM0178.490.nc
Mt~AC134242_17.2
Vv~GSVIVP00036381001
Gm~Glyma06g01470.1
-------------------------------
----GGGGGYGGRG--GPSSGNWRNDRQPEY
-------------------------------
----GGGGGYGGNR--GDSGGNWRN------
----GGGGGYGGGG-----GGGWRD------
----GGGGGYGGGG-----GGGWRD------
----------------------WRD------
----GGGSRGGGGY--GNSDGNWRN------
----GGGNRGGGYG---NSDGNWRN------
----GGGNRGGGYG---NSDGNWRN------
----GGGNRGGGYG---NSDGNWRN------
----YGGSRGGGYG--GDSGGNWRN------
----YGGGYGSRGG--GNSDGNWRN------
-------------------------------
----DGGSRYSRGG----GDGSWRN------
GG--GGGGYGGGGYSRGGGDGGY--------
SREGGGGSRYSSGG-------SWRD------
----GGGEGGGYGG--SGGGGGW--------
----DGGSRYSRGGEGGGSDGNWRN------
----DGGSRYSRGG---DVNGSRRN------
-------------------------------
----DGGSRYSSRG--GSDGGSWRD------
----GGGSRYSRGG-GDSD-GNWRS------
----DGGSRYSRGG-GG-DGGSWRS------
----DGGSRYSRSG--GASDGNWRN------
----DGGSRYSRGG-GGSDGGSWRN------


3' UTR introns