SRGD	Gene ID 109	BLASTp at NCBI	n/a	n/a		Organisms At ,Zm ,Mt ,Vv ,Os ,Gm ,Pp ,Lj ,Sb ,Pt Gene count 26 Cintron count 8 Cintron classes U2 ,im ,em ,absent ,GC
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		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~gw1.123.70.1 Pp~fgenesh1_pg.scaffold_42000167 Pp~gw1.136.87.1 Sb~estExt_fgenesh1_kg.C_chr_10212 Zm~GRMZM2G165901_T02 Zm~GRMZM2G165901_T01 Zm~GRMZM2G165901_T03 Sb~fgenesh1_pm.C_chr_8000625 Zm~GRMZM2G080603_T01 Zm~GRMZM2G080603_T02 Zm~GRMZM2G080603_T03 Os~LOC_Os03g46770.1 Os~LOC_Os12g43600.1 Lj~chr3.CM0091.670.nd Gm~Glyma11g12480.1 Mt~AC134242_43.2 Lj~chr3.CM0091.630.nd At~AT2G21660.1 Gm~Glyma11g12510.2 Gm~Glyma11g12490.1 Pt~gw1.IX.1795.1 Pt~estExt_Genewise1_v1.C_LG_IV0527 Lj~chr1.CM0178.490.nc Mt~AC134242_17.2 Vv~GSVIVP00036381001 Gm~Glyma06g01470.1	---------EFRCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFA ---MAGGE-EFRCFVGGLAWATTDGRLEGAFRPFGEVVQSKVISDRETGRSRGFGFVTFA ---------EFRCFVGGLAWATTDDRLEQAFRPFGDVIQSKVISDRETGRSRGFGFITFA ---MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFS ---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS ---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS ---MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFS ---MAASDVEYRCFVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFS ---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS ---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS ---MAASDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFS ---MAAPDVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFS ---MAAPDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFS -----MADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFT ---MASADVEYRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFA -----MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFA ---MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA ---MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK ---MASADVEFRCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFA MLSMASAYVEYRCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFA -----SAEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFG ----MAAEVEYRCFVGGLAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFN ---MASAEIEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFA ---MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFA ---MASAEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFS ---MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFA	2: 3-5 AC134242_43.2 0 0 U2 .. AC134242_17.2 0 0 U2 .. 3: 40-40 estExt_fgenesh1_kg.C_chr_10212 0 0 U2 GTCTGTTT..GCAG GRMZM2G165901_T02 0 0 U2 GTCTGCTT..GCAG GRMZM2G165901_T01 0 0 U2 GTCTGCTT..GCAG GRMZM2G165901_T03 0 0 U2 GTCTGCTT..GCAG fgenesh1_pm.C_chr_8000625 0 0 U2 GTCCGTCG..GCAG GRMZM2G080603_T01 0 0 U2 GTCCGTTC..GCAG GRMZM2G080603_T02 1 0 U2 GTCCGTTC..GCAG GRMZM2G080603_T03 0 0 U2 GTCCGTTC..GCAG LOC_Os03g46770.1 0 0 U2 GTTCGCCC..GCAG LOC_Os12g43600.1 0 0 U2 GTCCGATG..GCAG chr3.CM0091.670.nd 0 0 U2 GTCCGTTG..GCAG Glyma11g12480.1 0 0 U2 GTCCGCAT..GTAG chr3.CM0091.630.nd 0 0 U2 GTCCGTTT..GCAG Glyma11g12510.2 0 0 U2 GTCCGTTT..GCAG Glyma11g12490.1 0 0 U2 GTCCGTTT..GCAG estExt_Genewise1_v1.C_LG_IV0527 0 0 U2 GTCCGTTT..GCAG chr1.CM0178.490.nc 0 0 U2 GTCCGTTG..GCAG GSVIVP00036381001 0 0 U2 GTCTGTTT..ACAG Glyma06g01470.1 0 0 U2 GTCCGTTA..TCAG
Pp~gw1.123.70.1 Pp~fgenesh1_pg.scaffold_42000167 Pp~gw1.136.87.1 Sb~estExt_fgenesh1_kg.C_chr_10212 Zm~GRMZM2G165901_T02 Zm~GRMZM2G165901_T01 Zm~GRMZM2G165901_T03 Sb~fgenesh1_pm.C_chr_8000625 Zm~GRMZM2G080603_T01 Zm~GRMZM2G080603_T02 Zm~GRMZM2G080603_T03 Os~LOC_Os03g46770.1 Os~LOC_Os12g43600.1 Lj~chr3.CM0091.670.nd Gm~Glyma11g12480.1 Mt~AC134242_43.2 Lj~chr3.CM0091.630.nd At~AT2G21660.1 Gm~Glyma11g12510.2 Gm~Glyma11g12490.1 Pt~gw1.IX.1795.1 Pt~estExt_Genewise1_v1.C_LG_IV0527 Lj~chr1.CM0178.490.nc Mt~AC134242_17.2 Vv~GSVIVP00036381001 Gm~Glyma06g01470.1	DENSMNEAIKDMNGKELDGRNITVNQAQSRGG-GSGG----------------------- DENSMNAAIKEMNGQELDGRNITVNQAQSRGG-GGGGG------GGGGGY---------- DENAMNEAIKEMNGKELDGRNITVNQAQSRGG-GGGG----------------------- SEQSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGYG---GGGGGYGGRREGGGYG SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGY----GGGRG----------- SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGGGGYGGGRGGGGGY---------- SENSMLDAIENMNGKELDGRNITVNQAQSRGG-GGGG----------------------- TEEAMRSAIEGMNGKELDGRNITVNEAQSRGGRGGGGGGGYGGGRGGG------------ TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGGGGGYGGGRGGGGY---------- TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGGGGGYGGGRGGGGY---------- TEEAMRNAIEGMNGKELDGRNITVNEAQSRGG-RGGG-----------GY---------- SEQSMRDAIEGMNGKELDGRNITVNEAQSRRS-GGGGGGYG---GGGGGY---------- SEQAMRDAIEGMNGKELDGRNITVNEAQSRRS-GGGGGGGYGQRGGGGGY---------- SEEAMRSAIEGMNGNELDGRNITVNEAQARGG-CGGG----------------------- SEDSMRDAIEGMNGQNLDGRNITVNEAQSRGS-RGGGGGGY---GSGGGYN--RSGGA-- NEKSMNDAIEAMNGQDLDGRNITVNQAQSRGS-GGGGGGG----RGGGGY---------- SEQSMKDAIEGMNGQDIDGRNVTVNEAQARGR-GGG--------GGGGGY-----GGGRR DEKAMKDAIEGMNGQDLDGRSITVNEAQSRGS-GGGGGHRG---GGGGGY---RSGGG-- SEQSMKDAIAGMNGQDLDGRNITVNEAQTRAS-RGGG----------------------- SENSMKDAIEGMNGQNLDGRNITVNEAQSRGS-RGG------------------------ NEKAMRDAIDGMNGQDLDGRNITVNEAQSRGS-GGGG-------GGGGGYN--RNSGG-- NEKAMRDAIDGMNGQDLDGRNITVNEAQSRGS-GGGGGGGGYSRGGGGGY---------- SEQAMKDAIEAMNGQNLDGRNITVNEAQSRGS-SGGGGR--YG-GGGGGYG----GGG-- DEKSMRDAIEGMNGQDMDGRNITVNEAQSRGS-GGGG-----G-RGGGGYG----GGG-- SEQSMRDAIEGMNGQNLDGRNITVNEAQSRGS-GGGGGGG----GGGGGY-----RGG-- TEQAMRDAIEGMNGQNLDGRNITVNEAQSRGK-GGGGGGGGYG-GGGGGY-----GGG--	4: 90-94 GRMZM2G165901_T03 1 1 U2 GTGGCGGT..GGCG GRMZM2G080603_T03 1 1 GC GCGGCGGC..GGAG
Pp~gw1.123.70.1 Pp~fgenesh1_pg.scaffold_42000167 Pp~gw1.136.87.1 Sb~estExt_fgenesh1_kg.C_chr_10212 Zm~GRMZM2G165901_T02 Zm~GRMZM2G165901_T01 Zm~GRMZM2G165901_T03 Sb~fgenesh1_pm.C_chr_8000625 Zm~GRMZM2G080603_T01 Zm~GRMZM2G080603_T02 Zm~GRMZM2G080603_T03 Os~LOC_Os03g46770.1 Os~LOC_Os12g43600.1 Lj~chr3.CM0091.670.nd Gm~Glyma11g12480.1 Mt~AC134242_43.2 Lj~chr3.CM0091.630.nd At~AT2G21660.1 Gm~Glyma11g12510.2 Gm~Glyma11g12490.1 Pt~gw1.IX.1795.1 Pt~estExt_Genewise1_v1.C_LG_IV0527 Lj~chr1.CM0178.490.nc Mt~AC134242_17.2 Vv~GSVIVP00036381001 Gm~Glyma06g01470.1	--------------------------GGGGGYN----NRQGGGGGYGGG----------- --------------GRREQGGGGY----GGGYGGSRGGGDREGSGYGGS-RGGGYGG--- ------------------------------------------------------------ GGGG--------GYGGRREGGGGY---GGGGYG-------GGGGGYGGR-REGGGGY--- -------------GGGRREG-------GGGGY--------GGGGGYGGR-RE-------- -------------GGGRRDGGY----GGGGGYG---GRREGGGGGYGGG---GGYGGRRE ------------------------------------------------------------ ------------GGYGRRDGGGGGYGGGGGGYGGGRGGYGGGGGGYGGG--GGGY----- ------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY----- ------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY----- ------------GGGGRRDGGGGY--GGGGGY--------GGGGGYGGG--GGGY----- -------------GGGRGGGGYGG--GGGGGYG-RREGGYGGGGGYGGG-RGGGGGG--- ------------GGGGGYGGG------GGGGYGQRREGGYGGGGGYGGG-RGGGGG---- ------------------------------------------------------------ -GGY----------GGRREGAYNR-----------------NGGGYGGD-RDHRYGPYG- ------------GGGGGGYGGERRGYGGGGGYG-G-----GGGGGYGE--RRGGGGGYSR EGGY--------GGGG---GGSRYSGGGGGGYG----G--SGGGGYGGR-REGGGGGYGG -GGYSGGGGSYGGGGGRREGGGGY-SGGGGGYS-SRG---GGGGSYGGG-RREGGGGY-- ---------------------------GGGGF--------GSGGGYGGG-RDRGYGG--- -------------YGGRREGGYNR---GGGGY---------GGGGYGGD-RDCGYG---- -GGY--------GGGGRR--------EGGGGYS-------RGGGGYGGG----------- --------------GGRREGGGGGYSRGGGGYGGGGGGYGGGGGGYGGG-RDRGYG---- -GGY----GGREGGGG---GGYNR-NGGGGGYG-GGGYG-GGGGGYGGG-RDRGYGGGE- -GGY--------GGGGRREGGYNRSSGGGGGYG-G-----GGGGGYGGG-RDRGYGD--- -GGY--------GGGGRREGGYSR--GGGGGYG-------GGGGGYGGGSRDRGYG---- -GGYSRGGGGYGGGGGRREGGYNR-NGGGGGYG-GGGGGYGGGGGYGGGGRDRGYGG---	5: 128-128 chr1.CM0178.490.nc 1 1 U2 GTGGCGGT..GGCC 6: 134-134 GRMZM2G165901_T02 1 1 GC GCGGTTAT..GGCG 7: 161-161 Glyma11g12510.2 1 1 U2 GTGGTGGA..GGAG
Pp~gw1.123.70.1 Pp~fgenesh1_pg.scaffold_42000167 Pp~gw1.136.87.1 Sb~estExt_fgenesh1_kg.C_chr_10212 Zm~GRMZM2G165901_T02 Zm~GRMZM2G165901_T01 Zm~GRMZM2G165901_T03 Sb~fgenesh1_pm.C_chr_8000625 Zm~GRMZM2G080603_T01 Zm~GRMZM2G080603_T02 Zm~GRMZM2G080603_T03 Os~LOC_Os03g46770.1 Os~LOC_Os12g43600.1 Lj~chr3.CM0091.670.nd Gm~Glyma11g12480.1 Mt~AC134242_43.2 Lj~chr3.CM0091.630.nd At~AT2G21660.1 Gm~Glyma11g12510.2 Gm~Glyma11g12490.1 Pt~gw1.IX.1795.1 Pt~estExt_Genewise1_v1.C_LG_IV0527 Lj~chr1.CM0178.490.nc Mt~AC134242_17.2 Vv~GSVIVP00036381001 Gm~Glyma06g01470.1	------------------------------- ----GGGGGYGGRG--GPSSGNWRNDRQPEY ------------------------------- ----GGGGGYGGNR--GDSGGNWRN------ ----GGGGGYGGGG-----GGGWRD------ ----GGGGGYGGGG-----GGGWRD------ ----------------------WRD------ ----GGGSRGGGGY--GNSDGNWRN------ ----GGGNRGGGYG---NSDGNWRN------ ----GGGNRGGGYG---NSDGNWRN------ ----GGGNRGGGYG---NSDGNWRN------ ----YGGSRGGGYG--GDSGGNWRN------ ----YGGGYGSRGG--GNSDGNWRN------ ------------------------------- ----DGGSRYSRGG----GDGSWRN------ GG--GGGGYGGGGYSRGGGDGGY-------- SREGGGGSRYSSGG-------SWRD------ ----GGGEGGGYGG--SGGGGGW-------- ----DGGSRYSRGGEGGGSDGNWRN------ ----DGGSRYSRGG---DVNGSRRN------ ------------------------------- ----DGGSRYSSRG--GSDGGSWRD------ ----GGGSRYSRGG-GDSD-GNWRS------ ----DGGSRYSRGG-GG-DGGSWRS------ ----DGGSRYSRSG--GASDGNWRN------ ----DGGSRYSRGG-GGSDGGSWRN------
		3' UTR introns