SRGD	Gene ID 108	BLASTp at NCBI	n/a	n/a		Organisms Gm ,Zm ,Sb ,Pt ,At ,Mt ,Vv ,Os ,Pp ,Lj Gene count 26 Cintron count 8 Cintron classes U2 ,im ,em ,absent
Home (Search)						Bookmark for this page        Download data

		5' UTR introns
		Cluster Intron #: Alignment Start-Stop Gene ID, Intron #, Phase,Intron Type,Intron Seq
Pp~e_gw1.46.90.1 Pp~fgenesh1_pg.scaffold_181000018 Pp~e_gw1.288.28.1 Vv~GSVIVP00028009001 At~AT2G47640.1 At~AT3G62840.1 Pt~estExt_Genewise1_v1.C_LG_II0233 Pt~estExt_fgenesh4_kg.C_LG_XIV0024 Lj~chr4.CM0042.1540.nc Gm~Glyma10g33010.1 Gm~Glyma20g34630.1 Gm~Glyma05g34410.1 Mt~AC153350_26.2 Vv~GSVIVP00030614001 Zm~GRMZM2G171372_T03 Sb~estExt_fgenesh1_kg.C_chr_60138 Zm~GRMZM2G166985_T02 Zm~GRMZM2G166985_T01 Zm~GRMZM2G166985_T03 Zm~GRMZM2G171372_T01 Zm~GRMZM2G171372_T02 Zm~GRMZM2G076399_T01 Zm~GRMZM2G076399_T03 Zm~GRMZM2G076399_T04 Os~LOC_Os05g24970.1 Os~LOC_Os05g24970.2	------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ MSPAKHALQQTRPDPARHDITNTSLSHCPKRSYLRIFPFSTEKKSNPSALCSISLAREND ---------MSKP----------------------------------------------- ---------MSKP----------------------------------------------- ---------MSRP----------------------------------------------- ---------MSRP----------------------------------------------- ------------------------------------------------------------ ---------MSRP----------------------------------------------- ---------MSRP----------------------------------------------- ---------MSRP----------------------------------------------- ---------MSRP----------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------	2: 9-9 AT2G47640.1 1 2 U2 GTATATCT..GCAG AT3G62840.1 0 0 U2 .. estExt_Genewise1_v1.C_LG_II0233 1 2 U2 GTAACTTC..GCAG estExt_fgenesh4_kg.C_LG_XIV0024 1 2 U2 GTAACTTC..GCAG Glyma10g33010.1 1 2 U2 GTATTGAT..CAAG Glyma20g34630.1 1 2 U2 GTATTGAT..CAAG Glyma05g34410.1 1 2 U2 GTATTGGT..CAAG AC153350_26.2 0 0 U2 ..
Pp~e_gw1.46.90.1 Pp~fgenesh1_pg.scaffold_181000018 Pp~e_gw1.288.28.1 Vv~GSVIVP00028009001 At~AT2G47640.1 At~AT3G62840.1 Pt~estExt_Genewise1_v1.C_LG_II0233 Pt~estExt_fgenesh4_kg.C_LG_XIV0024 Lj~chr4.CM0042.1540.nc Gm~Glyma10g33010.1 Gm~Glyma20g34630.1 Gm~Glyma05g34410.1 Mt~AC153350_26.2 Vv~GSVIVP00030614001 Zm~GRMZM2G171372_T03 Sb~estExt_fgenesh1_kg.C_chr_60138 Zm~GRMZM2G166985_T02 Zm~GRMZM2G166985_T01 Zm~GRMZM2G166985_T03 Zm~GRMZM2G171372_T01 Zm~GRMZM2G171372_T02 Zm~GRMZM2G076399_T01 Zm~GRMZM2G076399_T03 Zm~GRMZM2G076399_T04 Os~LOC_Os05g24970.1 Os~LOC_Os05g24970.2	------------QEKTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHC ------MEEDTE--KTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHC ------QE------KTEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHC PKLRLQMEDDA-TAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC ------MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHC ------MEEDAPS-KNEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDAPS-KNEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDTT--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDT-AGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDA-AGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDT-VGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MEEDA-VGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MFLFQSA-KNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MQE---AGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADEN-AGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MAEETNI-KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MAEETNI-KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MAEETNI-KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC -----MAEEATQQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC ------MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC	3: 62-62 GSVIVP00028009001 0 2 U2 GTAAGTAT..TCAG 4: 69-72 fgenesh1_pg.scaffold_181000018 0 0 U2 GTAAGTTT..GTAG GSVIVP00028009001 1 0 U2 GTGAGTTC..ACAG AT2G47640.1 2 0 U2 GTAAGCTT..TTAG estExt_Genewise1_v1.C_LG_II0233 2 0 U2 GTATGTTA..ATAG estExt_fgenesh4_kg.C_LG_XIV0024 2 0 U2 GTATGTTA..ACAG chr4.CM0042.1540.nc 0 0 U2 GTAAGTTC..ACAG Glyma10g33010.1 2 0 U2 GTAAGTTC..ACAG Glyma20g34630.1 2 0 U2 GTAAGTTC..ACAG Glyma05g34410.1 2 0 U2 GTAAGTTC..ACAG estExt_fgenesh1_kg.C_chr_60138 1 0 U2 GTAAGTTC..ACAG GRMZM2G076399_T01 1 0 U2 GTGAGCCG..ACAG GRMZM2G076399_T03 0 0 U2 GTGAGCCG..ACAG GRMZM2G076399_T04 1 0 U2 GTGAGCCG..ACAG LOC_Os05g24970.1 0 0 U2 GTAAGCGG..CTAG LOC_Os05g24970.2 0 0 U2 GTAAGCGG..GCAG 5: 97-97 e_gw1.46.90.1 0 0 U2 GTACGTGG..GCAG fgenesh1_pg.scaffold_181000018 1 0 U2 GTTTGTGG..CTAG GSVIVP00028009001 2 0 U2 GTAATTGA..TCAG AT2G47640.1 3 0 U2 GTATAGAG..TCAG estExt_Genewise1_v1.C_LG_II0233 3 0 U2 GTAATGTT..TCAG estExt_fgenesh4_kg.C_LG_XIV0024 3 0 U2 GTAATGTT..TCAG chr4.CM0042.1540.nc 1 0 U2 GTATGTTT..GTAG Glyma10g33010.1 3 0 U2 GTGTGTTC..GCAG Glyma20g34630.1 3 0 U2 GTATGTTC..GCAG Glyma05g34410.1 3 0 U2 GTATGTTG..TCAG GSVIVP00030614001 0 0 U2 GTAATTGT..ACAG estExt_fgenesh1_kg.C_chr_60138 2 0 U2 GTATGCAA..TCAG GRMZM2G076399_T01 2 0 U2 GTTGGCAG..TTAG GRMZM2G076399_T03 1 0 U2 GTTGGCAG..TTAG GRMZM2G076399_T04 2 0 U2 GTTGGCAG..TTAG LOC_Os05g24970.1 1 0 U2 GTTGGTTG..CTAG LOC_Os05g24970.2 1 0 U2 GTTGGTTG..CTAG
Pp~e_gw1.46.90.1 Pp~fgenesh1_pg.scaffold_181000018 Pp~e_gw1.288.28.1 Vv~GSVIVP00028009001 At~AT2G47640.1 At~AT3G62840.1 Pt~estExt_Genewise1_v1.C_LG_II0233 Pt~estExt_fgenesh4_kg.C_LG_XIV0024 Lj~chr4.CM0042.1540.nc Gm~Glyma10g33010.1 Gm~Glyma20g34630.1 Gm~Glyma05g34410.1 Mt~AC153350_26.2 Vv~GSVIVP00030614001 Zm~GRMZM2G171372_T03 Sb~estExt_fgenesh1_kg.C_chr_60138 Zm~GRMZM2G166985_T02 Zm~GRMZM2G166985_T01 Zm~GRMZM2G166985_T03 Zm~GRMZM2G171372_T01 Zm~GRMZM2G171372_T02 Zm~GRMZM2G076399_T01 Zm~GRMZM2G076399_T03 Zm~GRMZM2G076399_T04 Os~LOC_Os05g24970.1 Os~LOC_Os05g24970.2	NMVLENVKEMWTEVPKAGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGESVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKSQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK	6: 132-132 e_gw1.46.90.1 1 0 U2 GTAACGGT..TCAG fgenesh1_pg.scaffold_181000018 2 0 U2 GTGCTCCA..TTAG GSVIVP00028009001 3 0 U2 GTTAGTTT..TCAG AT2G47640.1 4 0 U2 GTAGCCAA..TTAG estExt_Genewise1_v1.C_LG_II0233 4 0 U2 GTTGGTTA..TCAG estExt_fgenesh4_kg.C_LG_XIV0024 4 0 U2 GTTGGTTA..TCAG chr4.CM0042.1540.nc 2 0 U2 GTATTCTT..CCAG Glyma10g33010.1 4 0 U2 GTATGGTT..TCAG Glyma20g34630.1 4 0 U2 GTATGGTT..TCAG Glyma05g34410.1 4 0 U2 GTATGGTT..TCAG GSVIVP00030614001 1 0 U2 GTTGGGCT..GCAG estExt_fgenesh1_kg.C_chr_60138 3 0 U2 GTAATGAA..CTAG GRMZM2G076399_T01 3 0 U2 GTAGGCCG..ACAG GRMZM2G076399_T03 2 0 U2 GTAGGCCG..ACAG GRMZM2G076399_T04 3 0 U2 GTAGGCCG..ACAG LOC_Os05g24970.1 2 0 U2 GTACATGG..GCAG LOC_Os05g24970.2 2 0 U2 GTACATGG..GCAG
		3' UTR introns